Wall clock time and date at job start Sat Apr 11 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.56399 * 2 1 4 4 C 1.53004 * 117.49387 * 214.31181 * 2 1 3 5 5 C 1.53001 * 60.00226 * 252.50912 * 4 2 1 6 6 H 1.08996 * 117.49366 * 107.48931 * 5 4 2 7 7 C 1.50689 * 117.50187 * 252.51412 * 5 4 2 8 8 O 1.21283 * 120.00477 * 68.60351 * 7 5 4 9 9 N 1.34775 * 120.00081 * 248.61059 * 7 5 4 10 10 C 1.46930 * 120.62723 * 359.71272 * 9 7 5 11 11 C 1.53630 * 108.54180 * 126.37416 * 10 9 7 12 12 C 1.53035 * 109.24223 * 54.85481 * 11 10 9 13 13 C 1.53040 * 109.54221 * 298.51167 * 12 11 10 14 14 C 1.52990 * 109.50126 * 181.31469 * 13 12 11 15 15 O 1.42904 * 109.47027 * 65.25236 * 14 13 12 16 16 N 1.46895 * 109.52383 * 301.40251 * 13 12 11 17 17 C 1.46897 * 111.00039 * 184.75345 * 16 13 12 18 18 C 1.50701 * 109.47013 * 185.66254 * 17 16 13 19 19 O 1.21286 * 120.00164 * 0.02562 * 18 17 16 20 20 N 1.34789 * 119.99911 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99750 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00602 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99762 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00294 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00166 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47242 * 89.99991 * 25 23 21 27 27 H 1.48502 * 109.47281 * 209.99999 * 25 23 21 28 28 H 1.48498 * 109.47335 * 329.99870 * 25 23 21 29 29 C 1.46924 * 120.63657 * 179.97438 * 9 7 5 30 30 H 1.09005 * 109.46611 * 274.30890 * 1 2 3 31 31 H 1.09000 * 109.46632 * 34.30795 * 1 2 3 32 32 H 1.08998 * 109.47241 * 154.30890 * 1 2 3 33 33 H 1.08996 * 117.49795 * 145.02057 * 4 2 1 34 34 H 1.08999 * 117.50332 * 0.02562 * 4 2 1 35 35 H 1.09001 * 109.58712 * 246.20370 * 10 9 7 36 36 H 1.08997 * 109.58814 * 6.63568 * 10 9 7 37 37 H 1.08996 * 109.63076 * 294.86354 * 11 10 9 38 38 H 1.09002 * 109.45492 * 174.74071 * 11 10 9 39 39 H 1.08996 * 109.45979 * 178.49261 * 12 11 10 40 40 H 1.09004 * 109.45121 * 58.52791 * 12 11 10 41 41 H 1.08996 * 109.47537 * 185.25473 * 14 13 12 42 42 H 1.08998 * 109.47559 * 305.25336 * 14 13 12 43 43 H 0.96699 * 114.00138 * 180.02562 * 15 14 13 44 44 H 1.00900 * 110.99794 * 308.70482 * 16 13 12 45 45 H 1.09005 * 109.46982 * 305.66194 * 17 16 13 46 46 H 1.08997 * 109.47377 * 65.66648 * 17 16 13 47 47 H 0.96995 * 119.99650 * 0.02562 * 20 18 17 48 48 H 0.97001 * 120.00447 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.58245 * 353.36676 * 29 9 7 50 50 H 1.08998 * 109.58960 * 113.79261 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7651 5 6 2.2365 -1.1211 0.7649 6 1 1.6113 -1.8586 1.2682 7 6 3.5293 -0.7813 1.4607 8 8 3.9720 0.3462 1.4009 9 7 4.1936 -1.7304 2.1494 10 6 3.6668 -3.0992 2.2360 11 6 4.7620 -4.0742 1.7776 12 6 6.0281 -3.8349 2.6033 13 6 6.5276 -2.4068 2.3724 14 6 7.8114 -2.1792 3.1727 15 8 8.8462 -3.0228 2.6633 16 7 6.7990 -2.2068 0.9427 17 6 7.3870 -0.8830 0.6986 18 6 7.5223 -0.6593 -0.7855 19 8 7.1637 -1.5180 -1.5634 20 7 8.0409 0.4955 -1.2485 21 6 8.1635 0.6991 -2.5987 22 1 7.8442 -0.0654 -3.2914 23 6 8.6986 1.8893 -3.0759 24 7 9.0867 2.8200 -2.2331 25 14 8.8663 2.1666 -4.9156 26 1 7.6294 2.8034 -5.4350 27 1 10.0278 3.0539 -5.1786 28 1 9.0752 0.8632 -5.5957 29 6 5.4555 -1.4146 2.8325 30 1 -0.3633 0.0772 1.0248 31 1 -0.3632 0.8489 -0.5793 32 1 -0.3633 -0.9260 -0.4455 33 1 3.1714 -0.8753 -1.2684 34 1 1.6112 -1.8583 -1.2687 35 1 3.3866 -3.3184 3.2664 36 1 2.7948 -3.1968 1.5893 37 1 4.9797 -3.9105 0.7222 38 1 4.4204 -5.0989 1.9240 39 1 6.7991 -4.5428 2.2993 40 1 5.8036 -3.9745 3.6608 41 1 8.1156 -1.1364 3.0828 42 1 7.6328 -2.4163 4.2215 43 1 9.6911 -2.9315 3.1248 44 1 7.3928 -2.9383 0.5816 45 1 6.7416 -0.1147 1.1246 46 1 8.3708 -0.8307 1.1651 47 1 8.3273 1.1823 -0.6264 48 1 9.4599 3.6510 -2.5663 49 1 5.7640 -0.4003 2.5795 50 1 5.3185 -1.4989 3.9105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724909605.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:20 Heat of formation + Delta-G solvation = -88.674671 kcal Electronic energy + Delta-G solvation = -31726.330405 eV Core-core repulsion = 27561.408492 eV Total energy + Delta-G solvation = -4164.921913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54888 -39.01373 -37.78575 -36.79547 -36.14657 -34.50234 -33.69752 -32.25323 -31.09773 -30.45025 -28.82737 -26.55852 -26.19015 -25.67766 -23.92239 -23.15859 -22.07825 -20.78391 -19.41128 -19.12031 -18.47710 -17.77202 -17.49053 -17.28732 -16.23351 -15.92502 -15.43579 -14.98047 -14.84904 -14.76373 -14.39862 -14.28267 -14.16413 -13.89870 -13.65881 -13.38380 -13.22798 -13.03253 -12.81408 -12.75625 -12.42880 -12.25232 -11.95141 -11.87733 -11.78729 -11.51630 -11.37258 -11.36097 -11.00126 -10.89895 -10.80511 -10.39996 -10.32284 -10.27481 -10.12345 -10.04540 -9.97272 -9.53308 -9.39177 -8.48914 -8.32622 -7.86598 -7.81196 -6.30419 -3.70508 2.71234 3.00297 3.25001 3.32334 3.38424 3.91882 3.99690 4.07358 4.23318 4.37368 4.53805 4.68522 4.72696 4.84299 4.84997 4.98509 5.05841 5.11233 5.16410 5.23784 5.28061 5.31284 5.34122 5.36879 5.47425 5.57113 5.58760 5.61299 5.67404 5.74211 5.76661 5.80908 5.92892 5.97760 6.05582 6.15470 6.16494 6.18169 6.37095 6.41397 6.45523 6.59980 7.35582 7.48587 7.55248 7.65234 7.83463 8.18395 8.42093 8.74513 9.29777 9.67955 10.20316 10.87758 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008563 B = 0.004345 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.198166 B = 6442.486871 C = 8794.498567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.127 4.127 3 H 0.117 0.883 4 C -0.142 4.142 5 C -0.189 4.189 6 H 0.119 0.881 7 C 0.552 3.448 8 O -0.536 6.536 9 N -0.592 5.592 10 C 0.112 3.888 11 C -0.131 4.131 12 C -0.101 4.101 13 C 0.103 3.897 14 C 0.045 3.955 15 O -0.565 6.565 16 N -0.637 5.637 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.583 6.583 20 N -0.566 5.566 21 C -0.295 4.295 22 H 0.101 0.899 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.928 3.072 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.270 1.270 29 C 0.126 3.874 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.379 0.621 44 H 0.354 0.646 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.096 0.904 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 -11.322 15.015 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 H 0.135 0.865 4 C -0.179 4.179 5 C -0.210 4.210 6 H 0.137 0.863 7 C 0.340 3.660 8 O -0.413 6.413 9 N -0.324 5.324 10 C -0.011 4.011 11 C -0.169 4.169 12 C -0.139 4.139 13 C 0.010 3.990 14 C -0.035 4.035 15 O -0.370 6.370 16 N -0.269 5.269 17 C -0.086 4.086 18 C 0.235 3.765 19 O -0.467 6.467 20 N -0.203 5.203 21 C -0.424 4.424 22 H 0.119 0.881 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.195 1.195 29 C 0.002 3.998 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.226 0.774 44 H 0.174 0.826 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.114 0.886 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.280 -11.089 13.843 21.573 hybrid contribution 1.831 0.624 0.399 1.975 sum -10.449 -10.465 14.241 20.531 Atomic orbital electron populations 1.21379 0.92534 1.02081 1.01773 1.22382 0.94834 0.95383 1.01972 0.86530 1.23113 1.03469 1.00838 0.90483 1.22240 0.97649 1.04904 0.96252 0.86341 1.19555 0.84609 0.84339 0.77488 1.90702 1.68541 1.21209 1.60822 1.47558 1.22545 1.10115 1.52214 1.21806 0.97119 0.81366 1.00814 1.21925 0.94546 0.97842 1.02604 1.21471 0.97950 0.95041 0.99420 1.21353 0.91989 0.96302 0.89372 1.22880 0.89632 0.94067 0.96943 1.86445 1.22870 1.65258 1.62407 1.60153 1.52056 1.03688 1.11040 1.21740 0.97777 0.92624 0.96441 1.19756 0.83611 0.83981 0.89135 1.90495 1.53674 1.44621 1.57880 1.41835 1.55169 1.15280 1.08015 1.19665 1.38257 1.01931 0.82584 0.88100 1.25231 0.97258 0.95459 1.00085 1.69621 1.42838 1.07357 1.34713 0.85884 0.77695 0.78323 0.82519 1.20463 1.21021 1.19510 1.21472 0.83211 1.00038 0.95048 0.92273 0.91770 0.92514 0.87534 0.88058 0.92051 0.89710 0.89293 0.91480 0.90861 0.91977 0.93057 0.93556 0.77389 0.82561 0.89544 0.94010 0.77629 0.92035 0.88578 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.19 37.16 0.38 -0.75 16 2 C -0.13 -1.62 5.92 -90.61 -0.54 -2.15 16 3 H 0.12 1.77 7.67 -51.93 -0.40 1.38 16 4 C -0.14 -1.88 9.88 -26.73 -0.26 -2.15 16 5 C -0.19 -2.40 4.69 -91.77 -0.43 -2.83 16 6 H 0.12 1.15 6.80 -51.93 -0.35 0.80 16 7 C 0.55 8.78 7.48 -10.99 -0.08 8.69 16 8 O -0.54 -10.78 15.67 5.56 0.09 -10.70 16 9 N -0.59 -7.84 2.89 -172.53 -0.50 -8.34 16 10 C 0.11 1.10 6.33 -3.48 -0.02 1.08 16 11 C -0.13 -1.36 5.95 -26.39 -0.16 -1.52 16 12 C -0.10 -1.07 4.69 -26.69 -0.13 -1.20 16 13 C 0.10 1.30 0.39 -131.51 -0.05 1.25 16 14 C 0.05 0.50 5.22 37.15 0.19 0.69 16 15 O -0.56 -6.49 12.60 -35.23 -0.44 -6.94 16 16 N -0.64 -10.78 4.63 -101.13 -0.47 -11.25 16 17 C 0.05 0.91 5.28 -4.98 -0.03 0.88 16 18 C 0.45 11.41 7.83 -10.98 -0.09 11.33 16 19 O -0.58 -16.60 15.90 5.55 0.09 -16.51 16 20 N -0.57 -15.37 5.29 -10.96 -0.06 -15.43 16 21 C -0.29 -8.65 9.68 -14.94 -0.14 -8.79 16 22 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.78 13.05 55.50 0.72 -25.06 16 25 Si 0.93 21.98 29.55 -169.99 -5.02 16.96 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 29 C 0.13 1.63 5.05 -3.73 -0.02 1.61 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 33 H 0.11 1.81 8.14 -51.93 -0.42 1.38 16 34 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.75 5.66 -51.93 -0.29 0.45 16 37 H 0.09 1.22 7.53 -51.93 -0.39 0.83 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.84 7.80 -51.93 -0.40 0.44 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.59 6.78 -51.93 -0.35 0.24 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.38 2.78 9.12 45.56 0.42 3.19 16 44 H 0.35 6.49 8.13 -39.29 -0.32 6.17 16 45 H 0.09 1.72 6.09 -51.93 -0.32 1.41 16 46 H 0.04 0.76 6.68 -51.93 -0.35 0.41 16 47 H 0.39 10.31 7.90 -40.82 -0.32 9.99 16 48 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.10 1.50 5.04 -51.93 -0.26 1.24 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -35.70 396.74 -8.15 -43.84 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -7.07 Total: 20.81 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.47 Total: 6.63 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.30 Total: -60.08 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.27 Total: -34.15 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.70 -8.15 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724909605.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.830 kcal (2) G-P(sol) polarization free energy of solvation -35.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds