Wall clock time and date at job start Sat Apr 11 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99774 * 2 1 4 4 C 1.52997 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.54341 * 54.88725 * 4 3 2 6 6 C 1.53100 * 109.50587 * 174.99922 * 4 3 2 7 7 N 1.47009 * 109.25445 * 176.78144 * 6 4 3 8 8 C 1.46903 * 110.99970 * 177.60595 * 7 6 4 9 9 C 1.50701 * 109.47107 * 293.64374 * 8 7 6 10 10 O 1.21283 * 119.99898 * 353.89330 * 9 8 7 11 11 N 1.34772 * 119.99808 * 173.90488 * 9 8 7 12 12 C 1.46508 * 120.00035 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47017 * 89.99545 * 12 11 9 14 14 H 1.07997 * 120.00333 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99814 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00143 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99950 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47130 * 90.00165 * 17 15 13 19 19 H 1.48506 * 109.46684 * 210.00282 * 17 15 13 20 20 H 1.48500 * 109.47008 * 329.99885 * 17 15 13 21 21 C 1.46499 * 120.00479 * 359.97438 * 11 9 8 22 22 C 1.53002 * 109.47054 * 90.00365 * 21 11 9 23 23 C 1.47201 * 109.46938 * 180.02562 * 22 21 11 24 24 N 9.03685 * 151.87969 * 189.26119 * 4 1 2 25 25 C 1.47009 * 110.75711 * 301.38380 * 7 6 4 26 26 C 1.53094 * 109.26101 * 58.61635 * 25 7 6 27 27 H 1.08993 * 109.51189 * 183.17500 * 26 25 7 28 28 C 1.53001 * 109.50440 * 63.08490 * 26 25 7 29 29 O 1.43016 * 109.50397 * 294.78367 * 4 3 2 30 30 H 1.09000 * 109.47481 * 60.00222 * 1 2 3 31 31 H 1.09007 * 109.47239 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47325 * 300.00132 * 1 2 3 33 33 H 1.09001 * 109.46657 * 59.99640 * 3 2 1 34 34 H 1.08999 * 109.46929 * 299.99667 * 3 2 1 35 35 H 1.08999 * 109.50515 * 296.71891 * 6 4 3 36 36 H 1.09000 * 109.50638 * 56.85135 * 6 4 3 37 37 H 1.09002 * 109.46854 * 53.63398 * 8 7 6 38 38 H 1.08998 * 109.47783 * 173.63488 * 8 7 6 39 39 H 1.08997 * 109.47173 * 210.00256 * 12 11 9 40 40 H 1.08997 * 109.46704 * 329.99751 * 12 11 9 41 41 H 0.97000 * 120.00587 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.47208 * 210.00391 * 21 11 9 43 43 H 1.08996 * 109.47092 * 330.00425 * 21 11 9 44 44 H 1.09003 * 109.47134 * 300.00071 * 22 21 11 45 45 H 1.08996 * 109.47122 * 60.00079 * 22 21 11 46 46 H 1.09000 * 109.51009 * 178.55831 * 25 7 6 47 47 H 1.09002 * 109.50831 * 298.68069 * 25 7 6 48 48 H 1.09007 * 109.46739 * 60.00663 * 28 26 25 49 49 H 1.09000 * 109.47367 * 180.02562 * 28 26 25 50 50 H 1.08997 * 109.47672 * 300.00678 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8519 0.5672 -0.8411 6 6 4.1584 2.5776 -0.1264 7 7 5.6220 2.4628 -0.0489 8 6 6.2627 3.7733 -0.2226 9 6 6.0223 4.2681 -1.6256 10 8 5.4773 3.5498 -2.4368 11 7 6.4132 5.5085 -1.9789 12 6 6.1800 5.9894 -3.3430 13 6 4.8351 6.6656 -3.4142 14 1 4.2158 6.7304 -2.5318 15 6 4.3948 7.2007 -4.6062 16 7 3.2210 7.7904 -4.6685 17 14 5.4651 7.0869 -6.1330 18 1 5.1507 5.8341 -6.8656 19 1 5.1995 8.2542 -7.0117 20 1 6.8958 7.0820 -5.7353 21 6 7.0712 6.3762 -0.9989 22 6 8.5845 6.1591 -1.0604 23 6 9.2456 7.0305 -0.0753 24 7 9.7567 7.7036 0.6813 25 6 6.0294 1.8411 1.2194 26 6 5.3876 0.4557 1.3318 27 1 5.6412 0.0141 2.2955 28 6 5.9074 -0.4409 0.2063 29 8 3.9673 0.5835 1.2230 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6884 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8779 3.0167 -1.0838 36 1 3.7996 3.2114 0.6845 37 1 5.8399 4.4817 0.4898 38 1 7.3347 3.6795 -0.0490 39 1 6.9594 6.7009 -3.6157 40 1 6.1998 5.1464 -4.0337 41 1 2.9113 8.1672 -5.5070 42 1 6.8441 7.4180 -1.2256 43 1 6.7099 6.1348 0.0007 44 1 8.8116 5.1173 -0.8337 45 1 8.9459 6.4005 -2.0600 46 1 7.1146 1.7427 1.2445 47 1 5.7005 2.4632 2.0519 48 1 6.9904 -0.5349 0.2874 49 1 5.4499 -1.4270 0.2865 50 1 5.6522 0.0004 -0.7572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189475827.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:54 Heat of formation + Delta-G solvation = -78.609478 kcal Electronic energy + Delta-G solvation = -30818.911742 eV Core-core repulsion = 26654.426288 eV Total energy + Delta-G solvation = -4164.485454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32306 -39.17706 -37.67653 -37.00335 -35.70794 -35.12568 -32.89219 -32.84082 -31.07414 -30.38141 -28.79729 -27.32922 -27.03176 -25.55983 -24.14278 -23.69984 -22.60428 -21.83134 -19.51628 -18.60417 -17.79250 -17.06475 -16.87229 -16.68855 -16.56188 -16.40223 -15.66004 -15.35205 -15.24810 -15.04809 -14.75906 -14.54986 -14.34610 -14.19790 -13.96355 -13.57475 -13.42045 -13.14336 -12.75792 -12.61301 -12.55502 -12.38837 -12.32506 -12.13940 -11.95239 -11.87775 -11.65443 -11.63073 -11.48913 -11.21328 -11.13620 -11.09773 -10.86692 -10.60374 -10.34583 -10.23388 -9.75670 -9.67350 -9.62414 -9.09047 -8.66582 -8.32565 -7.95055 -6.16413 -4.16258 2.63631 2.72468 3.15211 3.22834 3.26690 3.29935 3.33740 3.56294 3.66304 3.91746 4.18215 4.32446 4.72207 4.79651 4.87339 4.90679 4.92778 4.99820 5.09504 5.11832 5.16769 5.18395 5.23144 5.26063 5.30215 5.34652 5.38284 5.42095 5.46499 5.50459 5.54843 5.57947 5.68790 5.75481 5.92744 5.95426 6.00713 6.02193 6.35318 6.51711 6.76258 6.85774 6.91594 7.06947 7.15684 7.23296 7.47680 7.51444 8.03859 8.37129 8.80642 8.87386 9.43321 10.96740 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008430 B = 0.003748 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.680461 B = 7469.679621 C = 9931.953363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.070 3.930 4 C 0.098 3.902 5 H 0.081 0.919 6 C 0.024 3.976 7 N -0.512 5.512 8 C 0.034 3.966 9 C 0.510 3.490 10 O -0.512 6.512 11 N -0.594 5.594 12 C 0.216 3.784 13 C -0.532 4.532 14 H 0.074 0.926 15 C 0.074 3.926 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.265 1.265 21 C 0.117 3.883 22 C -0.051 4.051 23 C 0.216 3.784 24 N -0.442 5.442 25 C 0.022 3.978 26 C 0.092 3.908 27 H 0.103 0.897 28 C -0.176 4.176 29 O -0.372 6.372 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.032 0.968 40 H 0.040 0.960 41 H 0.265 0.735 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 -12.620 11.394 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.007 4.007 4 C 0.040 3.960 5 H 0.099 0.901 6 C -0.104 4.104 7 N -0.237 5.237 8 C -0.097 4.097 9 C 0.296 3.704 10 O -0.387 6.387 11 N -0.326 5.326 12 C 0.096 3.904 13 C -0.570 4.570 14 H 0.092 0.908 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.010 4.010 22 C -0.092 4.092 23 C -0.103 4.103 24 N -0.119 5.119 25 C -0.106 4.106 26 C 0.034 3.966 27 H 0.121 0.879 28 C -0.234 4.234 29 O -0.291 6.291 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.923 -12.441 11.689 17.766 hybrid contribution 0.008 0.843 -0.642 1.060 sum 4.932 -11.597 11.046 16.758 Atomic orbital electron populations 1.22737 0.81179 1.02594 1.00034 1.87911 1.19455 1.27398 1.95429 1.22503 0.91745 0.85240 1.01261 1.22058 0.92128 0.93306 0.88514 0.90066 1.22818 0.87210 0.96616 1.03804 1.61777 1.07451 1.21381 1.33071 1.22134 1.00958 0.90633 0.95987 1.20171 0.79406 0.81591 0.89224 1.90680 1.40706 1.55078 1.52208 1.47905 1.58003 1.13124 1.13610 1.19712 0.97385 0.95149 0.78184 1.21287 1.01459 1.36454 0.97818 0.90764 1.24848 0.94879 0.94565 0.98574 1.69885 1.18825 1.37848 1.26830 0.86877 0.81240 0.78122 0.83585 1.19870 1.21137 1.18977 1.21338 0.88301 0.97840 0.93503 1.19897 0.96159 0.97262 0.95915 1.28994 0.93534 0.93825 0.93907 1.81154 1.09589 1.10113 1.11070 1.22853 1.01072 0.96278 0.90422 1.22209 0.81022 0.93736 0.99632 0.87946 1.22289 1.01053 0.99530 1.00502 1.88064 1.21123 1.81497 1.38385 0.93938 0.89742 0.94181 0.92628 0.91168 0.87201 0.94281 0.92092 0.88087 0.95044 0.94202 0.92493 0.88507 0.90471 0.87503 0.86605 0.89566 0.94003 0.91950 0.92428 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.18 10.67 -39.73 -0.42 -5.60 16 3 C 0.07 0.90 5.60 37.16 0.21 1.11 16 4 C 0.10 1.34 2.69 -26.68 -0.07 1.27 16 5 H 0.08 1.21 6.49 -51.93 -0.34 0.87 16 6 C 0.02 0.33 4.58 -3.71 -0.02 0.32 16 7 N -0.51 -6.63 3.79 -235.76 -0.89 -7.52 16 8 C 0.03 0.41 4.18 -4.97 -0.02 0.39 16 9 C 0.51 8.62 7.25 -10.99 -0.08 8.54 16 10 O -0.51 -10.91 14.25 5.55 0.08 -10.83 16 11 N -0.59 -9.92 2.46 -175.06 -0.43 -10.35 16 12 C 0.22 4.58 4.23 -5.19 -0.02 4.56 16 13 C -0.53 -13.94 9.94 -34.44 -0.34 -14.28 16 14 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 17 Si 0.87 20.24 27.47 -169.99 -4.67 15.57 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -5.64 6.54 56.52 0.37 -5.27 16 21 C 0.12 1.40 5.19 -4.04 -0.02 1.38 16 22 C -0.05 -0.46 6.03 -29.52 -0.18 -0.63 16 23 C 0.22 2.37 15.43 -20.81 -0.32 2.04 16 24 N -0.44 -6.11 18.53 42.09 0.78 -5.33 16 25 C 0.02 0.23 5.06 -3.72 -0.02 0.21 16 26 C 0.09 0.99 3.92 -26.68 -0.10 0.88 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 28 C -0.18 -1.87 8.89 37.16 0.33 -1.54 16 29 O -0.37 -5.02 10.25 -39.73 -0.41 -5.43 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.88 6.10 -51.93 -0.32 1.57 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.68 7.05 -51.93 -0.37 0.32 16 38 H 0.10 0.93 7.30 -51.93 -0.38 0.55 16 39 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 40 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 43 H 0.08 0.78 6.27 -51.93 -0.33 0.45 16 44 H 0.11 0.73 7.41 -51.93 -0.38 0.35 16 45 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 47 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.99 6.12 -51.93 -0.32 0.67 16 LS Contribution 404.39 15.07 6.09 6.09 Total: -1.00 -34.06 404.39 -6.97 -41.03 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.23 Total: 0.32 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 0.36 Total: 7.59 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.23 Total: -48.74 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.75 Total: -21.86 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.06 -6.97 -41.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189475827.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.577 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds