Wall clock time and date at job start Sat Apr 11 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99774 * 2 1 4 4 C 1.52997 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.54341 * 54.88725 * 4 3 2 6 6 C 1.53100 * 109.50587 * 174.99922 * 4 3 2 7 7 N 1.47009 * 109.25445 * 176.78144 * 6 4 3 8 8 C 1.46903 * 110.99970 * 177.60595 * 7 6 4 9 9 C 1.50701 * 109.47107 * 293.64374 * 8 7 6 10 10 O 1.21283 * 119.99898 * 353.89330 * 9 8 7 11 11 N 1.34772 * 119.99808 * 173.90488 * 9 8 7 12 12 C 1.46508 * 120.00035 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47017 * 89.99545 * 12 11 9 14 14 H 1.07997 * 120.00333 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99814 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00143 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99950 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47130 * 90.00165 * 17 15 13 19 19 H 1.48506 * 109.46684 * 210.00282 * 17 15 13 20 20 H 1.48500 * 109.47008 * 329.99885 * 17 15 13 21 21 C 1.46499 * 120.00479 * 359.97438 * 11 9 8 22 22 C 1.53002 * 109.47054 * 90.00365 * 21 11 9 23 23 C 1.47201 * 109.46938 * 180.02562 * 22 21 11 24 24 N 9.03685 * 151.87969 * 189.26119 * 4 1 2 25 25 C 1.47009 * 110.75711 * 301.38380 * 7 6 4 26 26 C 1.53094 * 109.26101 * 58.61635 * 25 7 6 27 27 H 1.08993 * 109.51189 * 183.17500 * 26 25 7 28 28 C 1.53001 * 109.50440 * 63.08490 * 26 25 7 29 29 O 1.43016 * 109.50397 * 294.78367 * 4 3 2 30 30 H 1.09000 * 109.47481 * 60.00222 * 1 2 3 31 31 H 1.09007 * 109.47239 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47325 * 300.00132 * 1 2 3 33 33 H 1.09001 * 109.46657 * 59.99640 * 3 2 1 34 34 H 1.08999 * 109.46929 * 299.99667 * 3 2 1 35 35 H 1.08999 * 109.50515 * 296.71891 * 6 4 3 36 36 H 1.09000 * 109.50638 * 56.85135 * 6 4 3 37 37 H 1.09002 * 109.46854 * 53.63398 * 8 7 6 38 38 H 1.08998 * 109.47783 * 173.63488 * 8 7 6 39 39 H 1.08997 * 109.47173 * 210.00256 * 12 11 9 40 40 H 1.08997 * 109.46704 * 329.99751 * 12 11 9 41 41 H 0.97000 * 120.00587 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.47208 * 210.00391 * 21 11 9 43 43 H 1.08996 * 109.47092 * 330.00425 * 21 11 9 44 44 H 1.09003 * 109.47134 * 300.00071 * 22 21 11 45 45 H 1.08996 * 109.47122 * 60.00079 * 22 21 11 46 46 H 1.09000 * 109.51009 * 178.55831 * 25 7 6 47 47 H 1.09002 * 109.50831 * 298.68069 * 25 7 6 48 48 H 1.09007 * 109.46739 * 60.00663 * 28 26 25 49 49 H 1.09000 * 109.47367 * 180.02562 * 28 26 25 50 50 H 1.08997 * 109.47672 * 300.00678 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8519 0.5672 -0.8411 6 6 4.1584 2.5776 -0.1264 7 7 5.6220 2.4628 -0.0489 8 6 6.2627 3.7733 -0.2226 9 6 6.0223 4.2681 -1.6256 10 8 5.4773 3.5498 -2.4368 11 7 6.4132 5.5085 -1.9789 12 6 6.1800 5.9894 -3.3430 13 6 4.8351 6.6656 -3.4142 14 1 4.2158 6.7304 -2.5318 15 6 4.3948 7.2007 -4.6062 16 7 3.2210 7.7904 -4.6685 17 14 5.4651 7.0869 -6.1330 18 1 5.1507 5.8341 -6.8656 19 1 5.1995 8.2542 -7.0117 20 1 6.8958 7.0820 -5.7353 21 6 7.0712 6.3762 -0.9989 22 6 8.5845 6.1591 -1.0604 23 6 9.2456 7.0305 -0.0753 24 7 9.7567 7.7036 0.6813 25 6 6.0294 1.8411 1.2194 26 6 5.3876 0.4557 1.3318 27 1 5.6412 0.0141 2.2955 28 6 5.9074 -0.4409 0.2063 29 8 3.9673 0.5835 1.2230 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6884 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8779 3.0167 -1.0838 36 1 3.7996 3.2114 0.6845 37 1 5.8399 4.4817 0.4898 38 1 7.3347 3.6795 -0.0490 39 1 6.9594 6.7009 -3.6157 40 1 6.1998 5.1464 -4.0337 41 1 2.9113 8.1672 -5.5070 42 1 6.8441 7.4180 -1.2256 43 1 6.7099 6.1348 0.0007 44 1 8.8116 5.1173 -0.8337 45 1 8.9459 6.4005 -2.0600 46 1 7.1146 1.7427 1.2445 47 1 5.7005 2.4632 2.0519 48 1 6.9904 -0.5349 0.2874 49 1 5.4499 -1.4270 0.2865 50 1 5.6522 0.0004 -0.7572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189475827.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:53 Heat of formation + Delta-G solvation = -103.688524 kcal Electronic energy + Delta-G solvation = -30819.999251 eV Core-core repulsion = 26654.426288 eV Total energy + Delta-G solvation = -4165.572963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38783 -40.37722 -38.65111 -38.00188 -36.85753 -36.30021 -34.77815 -33.81741 -32.33506 -31.40715 -30.15518 -28.45142 -28.06516 -26.49751 -25.20595 -24.97674 -23.75670 -23.16563 -20.47396 -19.87947 -19.14713 -18.46163 -18.12607 -17.71006 -17.56874 -17.43514 -16.93531 -16.40186 -16.28507 -16.02120 -15.97199 -15.68290 -15.50420 -15.33019 -15.00691 -14.73840 -14.49624 -14.42024 -14.19292 -13.74385 -13.66102 -13.53390 -13.33641 -13.29520 -13.10040 -12.95992 -12.74218 -12.65311 -12.55772 -12.43858 -12.37214 -12.11020 -12.06753 -11.95228 -11.80908 -11.67424 -11.28485 -10.78316 -10.75587 -10.68009 -10.36184 -9.40763 -9.29502 -8.27014 -6.31076 1.39189 1.43386 1.50184 1.72136 1.88572 1.88840 2.19895 2.37166 2.56244 2.71294 3.01241 3.09636 3.22052 3.75418 3.87633 3.92278 3.99871 4.01028 4.07771 4.13007 4.21215 4.24104 4.36569 4.39667 4.44733 4.47296 4.52420 4.55037 4.58911 4.64252 4.73661 4.81694 4.83240 4.85920 4.90507 4.91836 5.03093 5.04413 5.12994 5.15107 5.47749 5.54529 5.65777 5.80963 5.99720 6.13414 6.27704 6.31251 6.64135 6.71930 6.75582 7.30216 7.53179 8.89774 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008430 B = 0.003748 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.680461 B = 7469.679621 C = 9931.953363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.070 3.930 4 C 0.106 3.894 5 H 0.061 0.939 6 C 0.032 3.968 7 N -0.527 5.527 8 C 0.043 3.957 9 C 0.503 3.497 10 O -0.566 6.566 11 N -0.596 5.596 12 C 0.224 3.776 13 C -0.530 4.530 14 H 0.029 0.971 15 C 0.010 3.990 16 N -0.950 5.950 17 Si 0.941 3.059 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.227 1.227 21 C 0.112 3.888 22 C -0.037 4.037 23 C 0.246 3.754 24 N -0.493 5.493 25 C 0.025 3.975 26 C 0.083 3.917 27 H 0.129 0.871 28 C -0.170 4.170 29 O -0.385 6.385 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.145 0.855 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.265 0.735 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.117 0.883 47 H 0.050 0.950 48 H 0.083 0.917 49 H 0.053 0.947 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.464 -13.556 12.753 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.007 4.007 4 C 0.048 3.952 5 H 0.079 0.921 6 C -0.096 4.096 7 N -0.252 5.252 8 C -0.088 4.088 9 C 0.292 3.708 10 O -0.444 6.444 11 N -0.328 5.328 12 C 0.102 3.898 13 C -0.569 4.569 14 H 0.048 0.952 15 C -0.188 4.188 16 N -0.590 5.590 17 Si 0.765 3.235 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.149 1.149 21 C -0.013 4.013 22 C -0.078 4.078 23 C -0.072 4.072 24 N -0.171 5.171 25 C -0.102 4.102 26 C 0.026 3.974 27 H 0.147 0.853 28 C -0.227 4.227 29 O -0.304 6.304 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.163 0.837 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.159 0.841 45 H 0.146 0.854 46 H 0.135 0.865 47 H 0.069 0.931 48 H 0.102 0.898 49 H 0.072 0.928 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.976 -13.367 13.106 20.349 hybrid contribution -1.031 1.083 -0.990 1.794 sum 6.945 -12.284 12.116 18.599 Atomic orbital electron populations 1.22950 0.79441 1.04007 1.00746 1.87871 1.21462 1.27585 1.95561 1.22490 0.91604 0.85300 1.01336 1.21859 0.92477 0.92686 0.88210 0.92094 1.22580 0.88761 0.96581 1.01699 1.61733 1.06291 1.21997 1.35149 1.22180 1.03548 0.90557 0.92485 1.21078 0.77957 0.81015 0.90769 1.90665 1.42908 1.56641 1.54178 1.47858 1.58317 1.13800 1.12820 1.19368 0.95074 0.94464 0.80922 1.21616 1.03218 1.35899 0.96138 0.95248 1.25819 0.96242 0.94338 1.02358 1.70057 1.21296 1.39925 1.27763 0.85807 0.81362 0.77470 0.78880 1.20554 1.21105 1.14935 1.21529 0.90262 0.96210 0.93305 1.19869 0.93206 0.98721 0.96007 1.29143 0.92363 0.92717 0.92954 1.81203 1.11264 1.11746 1.12839 1.22954 1.02760 0.95459 0.89046 1.22537 0.79613 0.94478 1.00805 0.85307 1.22222 1.02401 0.99046 0.99063 1.88044 1.23145 1.81431 1.37791 0.93604 0.88035 0.93075 0.91821 0.91769 0.91033 0.93964 0.90478 0.83697 0.92387 0.95778 0.92615 0.90005 0.88110 0.84084 0.85447 0.86494 0.93148 0.89765 0.92826 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.15 10.67 -144.68 -1.54 -12.70 16 3 C 0.07 1.87 5.60 71.98 0.40 2.28 16 4 C 0.11 2.98 2.69 30.63 0.08 3.06 16 5 H 0.06 1.94 6.49 -2.39 -0.02 1.92 16 6 C 0.03 0.93 4.58 86.32 0.40 1.33 16 7 N -0.53 -12.67 3.79 -899.80 -3.41 -16.08 16 8 C 0.04 0.91 4.18 85.56 0.36 1.26 16 9 C 0.50 16.49 7.25 87.66 0.64 17.13 16 10 O -0.57 -24.66 14.25 -3.04 -0.04 -24.70 16 11 N -0.60 -19.00 2.46 -826.15 -2.03 -21.03 16 12 C 0.22 9.30 4.23 85.63 0.36 9.66 16 13 C -0.53 -28.55 9.94 25.60 0.25 -28.29 16 14 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 15 C 0.01 0.56 5.47 84.66 0.46 1.02 16 16 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 17 Si 0.94 41.72 27.47 68.60 1.88 43.60 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.23 -8.57 6.54 99.48 0.65 -7.91 16 21 C 0.11 2.37 5.19 86.38 0.45 2.82 16 22 C -0.04 -0.50 6.03 28.79 0.17 -0.33 16 23 C 0.25 4.54 15.43 89.46 1.38 5.92 16 24 N -0.49 -12.48 18.53 19.99 0.37 -12.11 16 25 C 0.03 0.42 5.06 86.31 0.44 0.86 16 26 C 0.08 1.58 3.92 30.63 0.12 1.70 16 27 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 28 C -0.17 -3.34 8.89 71.98 0.64 -2.70 16 29 O -0.38 -10.06 10.25 -144.68 -1.48 -11.54 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 2.63 6.10 -2.39 -0.01 2.61 16 36 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.45 7.05 -2.39 -0.02 1.43 16 38 H 0.15 1.82 7.30 -2.39 -0.02 1.80 16 39 H 0.06 2.12 7.13 -2.39 -0.02 2.10 16 40 H 0.02 1.09 6.85 -2.39 -0.02 1.08 16 41 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 43 H 0.10 1.68 6.27 -2.39 -0.01 1.66 16 44 H 0.14 1.07 7.41 -2.39 -0.02 1.05 16 45 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.12 1.30 8.09 -2.39 -0.02 1.28 16 47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.05 1.25 6.12 -2.39 -0.01 1.23 16 Total: -1.00 -80.46 404.39 2.32 -78.14 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.87 Total: 16.78 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 7.40 Total: 17.44 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -4.77 Total: -107.02 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -3.07 Total: -48.94 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.60 kcal Total: -80.46 2.32 -78.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189475827.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.551 kcal (2) G-P(sol) polarization free energy of solvation -80.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds