Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00021 * 2 1 4 4 C 1.52995 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.51224 * 304.91312 * 4 3 2 6 6 C 1.53096 * 109.50817 * 184.78068 * 4 3 2 7 7 N 1.47014 * 109.25975 * 183.21862 * 6 4 3 8 8 C 1.46903 * 110.99896 * 182.39754 * 7 6 4 9 9 C 1.50702 * 109.47075 * 170.00334 * 8 7 6 10 10 O 1.21284 * 120.00148 * 353.90467 * 9 8 7 11 11 N 1.34771 * 120.00362 * 173.90226 * 9 8 7 12 12 C 1.46502 * 120.00557 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47172 * 89.99827 * 12 11 9 14 14 H 1.08008 * 119.99838 * 0.02562 * 13 12 11 15 15 C 1.37867 * 120.00161 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00087 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00391 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46795 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46967 * 119.99851 * 17 15 13 20 20 H 1.48494 * 109.47560 * 240.00210 * 17 15 13 21 21 C 1.46505 * 119.99594 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47357 * 89.99799 * 21 11 9 23 23 C 1.47197 * 109.47084 * 179.97438 * 22 21 11 24 24 N 9.05578 * 152.67077 * 201.47234 * 3 1 2 25 25 C 1.47008 * 110.75475 * 58.61994 * 7 6 4 26 26 C 1.53105 * 109.25636 * 301.38610 * 25 7 6 27 27 H 1.09002 * 109.53643 * 296.88949 * 26 25 7 28 28 C 1.52990 * 109.50642 * 176.78277 * 26 25 7 29 29 O 1.43012 * 109.25888 * 56.84388 * 26 25 7 30 30 H 1.08998 * 109.47390 * 300.00049 * 1 2 3 31 31 H 1.08997 * 109.47007 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46936 * 60.00110 * 1 2 3 33 33 H 1.08994 * 109.47077 * 299.99844 * 3 2 1 34 34 H 1.09004 * 109.47236 * 60.00191 * 3 2 1 35 35 H 1.09002 * 109.51069 * 303.15901 * 6 4 3 36 36 H 1.09007 * 109.50802 * 63.28556 * 6 4 3 37 37 H 1.09005 * 109.47035 * 290.00061 * 8 7 6 38 38 H 1.08993 * 109.47656 * 50.00289 * 8 7 6 39 39 H 1.08998 * 109.47182 * 210.00161 * 12 11 9 40 40 H 1.09000 * 109.46476 * 330.00146 * 12 11 9 41 41 H 0.97002 * 120.00381 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.46723 * 210.00024 * 21 11 9 43 43 H 1.08998 * 109.47359 * 329.99730 * 21 11 9 44 44 H 1.08998 * 109.47069 * 300.00234 * 22 21 11 45 45 H 1.09005 * 109.46987 * 60.00064 * 22 21 11 46 46 H 1.08998 * 109.51076 * 181.44917 * 25 7 6 47 47 H 1.08997 * 109.54090 * 61.33890 * 25 7 6 48 48 H 1.09001 * 109.47253 * 300.21714 * 28 26 25 49 49 H 1.09005 * 109.47675 * 60.21178 * 28 26 25 50 50 H 1.09000 * 109.47419 * 180.21201 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8515 0.5699 0.8434 6 6 4.1585 2.5779 0.1209 7 7 5.6221 2.4628 0.0434 8 6 6.2629 3.7739 0.2119 9 6 7.7499 3.5893 0.3727 10 8 8.2165 2.4733 0.4602 11 7 8.5614 4.6644 0.4192 12 6 10.0069 4.4850 0.5760 13 6 10.6496 4.3735 -0.7825 14 1 10.0420 4.4310 -1.6736 15 6 12.0130 4.1982 -0.8878 16 7 12.7528 4.1287 0.1973 17 14 12.8096 4.0593 -2.5717 18 1 11.7666 4.1687 -3.6232 19 1 13.8003 5.1524 -2.7423 20 1 13.4951 2.7472 -2.6884 21 6 7.9977 6.0126 0.3140 22 6 7.6531 6.5318 1.7113 23 6 7.0874 7.8866 1.6056 24 7 6.6501 8.9319 1.5219 25 6 6.0291 1.8363 -1.2227 26 6 5.3872 0.4505 -1.3296 27 1 5.7577 -0.1859 -0.5259 28 6 5.7418 -0.1740 -2.6805 29 8 3.9670 0.5788 -1.2209 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.7994 3.2087 -0.6922 36 1 3.8784 3.0206 1.0768 37 1 6.0660 4.3900 -0.6655 38 1 5.8598 4.2642 1.0980 39 1 10.4239 5.3413 1.1061 40 1 10.2004 3.5758 1.1452 41 1 13.7121 4.0049 0.1233 42 1 8.7271 6.6760 -0.1506 43 1 7.0944 5.9822 -0.2953 44 1 6.9238 5.8683 2.1759 45 1 8.5565 6.5622 2.3206 46 1 7.1143 1.7377 -1.2477 47 1 5.7005 2.4550 -2.0577 48 1 5.3725 0.4636 -3.4837 49 1 6.8244 -0.2715 -2.7628 50 1 5.2814 -1.1590 -2.7576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249577270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -85.839533 kcal Electronic energy + Delta-G solvation = -30417.168109 eV Core-core repulsion = 26252.369137 eV Total energy + Delta-G solvation = -4164.798973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.17718 -39.06748 -37.82773 -36.90347 -35.64210 -35.06177 -33.28770 -32.91400 -30.87262 -30.32049 -28.61947 -27.27556 -26.71476 -25.70562 -24.07081 -23.60296 -22.08359 -22.07366 -20.43633 -18.54745 -17.65841 -17.11664 -16.78465 -16.54599 -16.44909 -16.10227 -15.75352 -15.56974 -15.49108 -15.15478 -14.75882 -14.45031 -14.27968 -14.05229 -13.78664 -13.50710 -13.40825 -12.95824 -12.80385 -12.54474 -12.53747 -12.46650 -12.26471 -12.15318 -11.93306 -11.82418 -11.75894 -11.62356 -11.31831 -11.19010 -11.03507 -11.00690 -10.83955 -10.67215 -10.47768 -10.21063 -9.95584 -9.71465 -9.64396 -9.00053 -8.50336 -8.32116 -7.86643 -6.11619 -4.16352 2.68674 2.77052 3.18062 3.25706 3.28697 3.34415 3.37501 3.53486 3.60720 3.90285 4.21584 4.39127 4.73157 4.78082 4.86003 4.87826 4.92697 4.97303 5.05102 5.08205 5.09360 5.12603 5.20732 5.21281 5.24787 5.30086 5.33830 5.35790 5.38705 5.43402 5.49843 5.63912 5.73200 5.78802 5.82393 6.01907 6.05615 6.09040 6.19966 6.73680 6.86099 6.90654 6.99314 7.24179 7.33983 7.40779 7.53424 7.84471 8.14336 8.23302 8.81922 8.97473 9.49469 10.96464 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009985 B = 0.003143 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.656181 B = 8907.350229 C =11146.040554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.071 3.929 4 C 0.098 3.902 5 H 0.076 0.924 6 C 0.027 3.973 7 N -0.516 5.516 8 C 0.033 3.967 9 C 0.508 3.492 10 O -0.513 6.513 11 N -0.599 5.599 12 C 0.246 3.754 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.117 3.883 22 C -0.051 4.051 23 C 0.217 3.783 24 N -0.446 5.446 25 C 0.020 3.980 26 C 0.093 3.907 27 H 0.070 0.930 28 C -0.142 4.142 29 O -0.374 6.374 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.263 0.737 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.109 0.891 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.568 -2.950 0.651 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.006 4.006 4 C 0.040 3.960 5 H 0.094 0.906 6 C -0.102 4.102 7 N -0.240 5.240 8 C -0.098 4.098 9 C 0.294 3.706 10 O -0.387 6.387 11 N -0.331 5.331 12 C 0.127 3.873 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.009 4.009 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.123 5.123 25 C -0.107 4.107 26 C 0.035 3.965 27 H 0.088 0.912 28 C -0.200 4.200 29 O -0.294 6.294 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.055 0.945 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.602 -2.560 0.875 20.779 hybrid contribution 0.423 0.632 -1.272 1.482 sum -20.180 -1.928 -0.397 20.276 Atomic orbital electron populations 1.22742 0.81145 1.02808 0.99825 1.87956 1.19439 1.27217 1.95356 1.22480 0.91876 0.85399 1.00820 1.21996 0.91949 0.93105 0.88953 0.90571 1.22686 0.88496 0.96963 1.02047 1.61790 1.05365 1.21237 1.35634 1.22150 0.94419 0.90822 1.02381 1.20111 0.87412 0.85193 0.77920 1.90682 1.76427 1.23617 1.47991 1.48237 1.09922 1.03478 1.71500 1.19346 0.72004 0.98434 0.97528 1.21426 0.92269 1.50371 0.92559 0.92439 1.24912 0.97197 0.95021 0.96836 1.69926 1.06021 1.49624 1.27580 0.86481 0.79303 0.77749 0.84112 1.19830 1.21001 1.20857 1.21308 1.00100 0.86222 0.93319 1.19910 1.02545 0.84849 1.01902 1.29126 0.93069 0.94822 0.93112 1.81218 1.10114 1.12305 1.08662 1.23001 1.03534 0.95264 0.88921 1.22146 0.80223 0.95316 0.98816 0.91174 1.21726 1.02035 1.01034 0.95206 1.88002 1.22194 1.81207 1.37955 0.94174 0.89596 0.94106 0.92540 0.91743 0.93869 0.89454 0.92276 0.88235 0.94758 0.93486 0.92704 0.88738 0.90871 0.87597 0.86400 0.87306 0.94515 0.92143 0.90522 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.23 10.67 -39.95 -0.43 -4.66 16 3 C 0.07 0.67 5.60 37.16 0.21 0.88 16 4 C 0.10 1.13 3.09 -26.68 -0.08 1.05 16 5 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 6 C 0.03 0.28 4.93 -3.71 -0.02 0.26 16 7 N -0.52 -7.02 4.42 -235.75 -1.04 -8.07 16 8 C 0.03 0.43 4.18 -4.97 -0.02 0.41 16 9 C 0.51 8.99 7.25 -10.99 -0.08 8.91 16 10 O -0.51 -11.44 14.25 5.55 0.08 -11.36 16 11 N -0.60 -10.50 2.46 -175.06 -0.43 -10.93 16 12 C 0.25 5.65 5.16 -5.19 -0.03 5.63 16 13 C -0.53 -13.74 9.38 -34.45 -0.32 -14.06 16 14 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 17 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.12 1.48 5.19 -4.04 -0.02 1.46 16 22 C -0.05 -0.50 6.03 -29.52 -0.18 -0.67 16 23 C 0.22 2.50 15.43 -20.76 -0.32 2.18 16 24 N -0.45 -6.34 18.54 42.16 0.78 -5.56 16 25 C 0.02 0.30 4.58 -3.71 -0.02 0.28 16 26 C 0.09 1.26 3.43 -26.68 -0.09 1.17 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 C -0.14 -1.67 9.57 37.15 0.36 -1.32 16 29 O -0.37 -5.12 10.08 -39.95 -0.40 -5.53 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.06 0.68 7.05 -51.93 -0.37 0.32 16 38 H 0.10 0.98 7.31 -51.93 -0.38 0.60 16 39 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 40 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 43 H 0.07 0.77 6.27 -51.93 -0.33 0.44 16 44 H 0.11 0.82 7.41 -51.93 -0.38 0.44 16 45 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.11 1.90 6.10 -51.93 -0.32 1.59 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 412.60 15.07 6.22 6.22 Total: -1.00 -33.57 412.60 -7.56 -41.13 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.46 Total: -1.86 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 0.40 Total: 9.11 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.05 Total: -48.95 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.75 Total: -21.54 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.57 -7.56 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249577270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.709 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds