Wall clock time and date at job start Sat Apr 11 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50715 * 304.91296 * 4 3 2 6 6 C 1.53094 * 109.50568 * 184.78211 * 4 3 2 7 7 N 1.47023 * 109.25994 * 183.21763 * 6 4 3 8 8 C 1.46899 * 111.00007 * 182.39188 * 7 6 4 9 9 C 1.50701 * 109.46760 * 170.32210 * 8 7 6 10 10 O 1.21276 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99799 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00093 * 179.97438 * 11 9 8 13 13 C 1.50693 * 109.47192 * 89.99835 * 12 11 9 14 14 H 1.08001 * 120.00313 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99961 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00326 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00016 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47305 * 59.99847 * 17 15 13 19 19 H 1.48501 * 109.47180 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46920 * 299.99966 * 17 15 13 21 21 C 1.46501 * 120.00027 * 359.97438 * 11 9 8 22 22 C 1.52999 * 109.47277 * 89.99775 * 21 11 9 23 23 C 1.47202 * 109.47068 * 179.97438 * 22 21 11 24 24 N 8.98903 * 151.42208 * 208.77769 * 3 1 2 25 25 C 1.47024 * 110.75031 * 58.61551 * 7 6 4 26 26 C 1.53091 * 109.25658 * 301.38586 * 25 7 6 27 27 H 1.08998 * 109.54397 * 176.80908 * 26 25 7 28 28 C 1.53001 * 109.50825 * 296.91709 * 26 25 7 29 29 O 1.43015 * 109.26009 * 56.84799 * 26 25 7 30 30 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 33 33 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 34 34 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 35 35 H 1.09005 * 109.50748 * 303.15089 * 6 4 3 36 36 H 1.08994 * 109.51080 * 63.28149 * 6 4 3 37 37 H 1.09007 * 109.47106 * 290.31813 * 8 7 6 38 38 H 1.08996 * 109.47231 * 50.31901 * 8 7 6 39 39 H 1.09004 * 109.46991 * 210.00230 * 12 11 9 40 40 H 1.08999 * 109.46657 * 329.99935 * 12 11 9 41 41 H 0.96994 * 120.00217 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.47233 * 210.00042 * 21 11 9 43 43 H 1.08999 * 109.47380 * 329.99548 * 21 11 9 44 44 H 1.08998 * 109.47457 * 299.99954 * 22 21 11 45 45 H 1.09007 * 109.46957 * 60.00239 * 22 21 11 46 46 H 1.08997 * 109.50479 * 181.45163 * 25 7 6 47 47 H 1.08998 * 109.50748 * 61.32045 * 25 7 6 48 48 H 1.09001 * 109.47594 * 179.78690 * 28 26 25 49 49 H 1.09000 * 109.46794 * 299.78092 * 28 26 25 50 50 H 1.08996 * 109.47340 * 59.78152 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8515 0.5699 0.8434 6 6 4.1585 2.5779 0.1210 7 7 5.6222 2.4629 0.0435 8 6 6.2629 3.7740 0.2119 9 6 7.7508 3.5900 0.3648 10 8 8.2302 2.4763 0.3368 11 7 8.5488 4.6630 0.5327 12 6 9.9952 4.4841 0.6820 13 6 10.6491 4.5256 -0.6750 14 1 10.0476 4.6711 -1.5601 15 6 12.0155 4.3788 -0.7865 16 7 12.7481 4.2022 0.2913 17 14 12.8263 4.4310 -2.4687 18 1 12.5528 5.7423 -3.1096 19 1 14.2924 4.2495 -2.3174 20 1 12.2781 3.3418 -3.3163 21 6 7.9698 6.0084 0.5660 22 6 7.6077 6.3723 2.0073 23 6 7.0266 7.7243 2.0408 24 7 6.5779 8.7656 2.0700 25 6 6.0292 1.8363 -1.2228 26 6 5.3873 0.4505 -1.3295 27 1 5.6399 0.0048 -2.2916 28 6 5.9074 -0.4418 -0.2008 29 8 3.9671 0.5788 -1.2208 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.7995 3.2087 -0.6923 36 1 3.8784 3.0207 1.0767 37 1 6.0613 4.3920 -0.6631 38 1 5.8638 4.2619 1.1011 39 1 10.3978 5.2836 1.3040 40 1 10.1955 3.5216 1.1526 41 1 13.7093 4.0986 0.2127 42 1 8.6949 6.7256 0.1813 43 1 7.0719 6.0329 -0.0514 44 1 6.8826 5.6551 2.3920 45 1 8.5057 6.3478 2.6248 46 1 7.1144 1.7376 -1.2477 47 1 5.7000 2.4552 -2.0574 48 1 5.4472 -1.4271 -0.2751 49 1 6.9898 -0.5393 -0.2842 50 1 5.6559 0.0051 0.7610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249577272.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:01 Heat of formation + Delta-G solvation = -82.564970 kcal Electronic energy + Delta-G solvation = -30611.571283 eV Core-core repulsion = 26446.914306 eV Total energy + Delta-G solvation = -4164.656977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.29603 -39.10305 -37.83175 -36.93482 -35.64346 -35.04973 -32.91774 -32.87931 -30.87476 -30.34292 -28.51386 -27.33294 -26.66244 -25.71434 -24.06814 -23.65110 -22.81483 -22.03284 -19.51960 -18.57501 -17.65539 -17.05433 -16.76607 -16.61586 -16.45464 -16.30365 -15.71778 -15.53937 -15.23239 -14.91204 -14.76736 -14.43905 -14.32752 -14.21053 -14.04329 -13.58234 -13.35602 -13.03513 -12.74687 -12.55197 -12.49411 -12.45722 -12.18334 -12.00017 -11.84023 -11.80398 -11.68103 -11.51145 -11.29725 -11.17390 -11.09001 -11.03041 -10.82130 -10.63772 -10.31047 -10.19829 -9.93662 -9.75096 -9.66170 -8.97083 -8.49618 -8.28340 -7.86603 -6.11337 -4.16272 2.69857 2.78180 3.20886 3.26427 3.28023 3.33110 3.36501 3.57163 3.65927 3.92521 4.23218 4.39277 4.74310 4.80205 4.87866 4.88908 4.94209 4.98185 5.05668 5.07874 5.11702 5.14315 5.20342 5.22400 5.25125 5.31369 5.35650 5.38228 5.40203 5.44961 5.51385 5.66197 5.78767 5.87397 5.97273 6.02725 6.12241 6.19094 6.52159 6.74818 6.86921 6.93422 7.00242 7.24503 7.34223 7.40561 7.53517 7.84414 8.14455 8.23502 8.81553 8.97251 9.49418 10.96646 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010586 B = 0.003104 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.421013 B = 9019.221952 C =11078.931718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.071 3.929 4 C 0.094 3.906 5 H 0.080 0.920 6 C 0.026 3.974 7 N -0.512 5.512 8 C 0.033 3.967 9 C 0.509 3.491 10 O -0.513 6.513 11 N -0.599 5.599 12 C 0.247 3.753 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.118 3.882 22 C -0.051 4.051 23 C 0.217 3.783 24 N -0.446 5.446 25 C 0.017 3.983 26 C 0.093 3.907 27 H 0.104 0.896 28 C -0.170 4.170 29 O -0.372 6.372 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.264 0.736 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.035 0.965 48 H 0.052 0.948 49 H 0.070 0.930 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.459 -3.343 1.409 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.006 4.006 4 C 0.036 3.964 5 H 0.098 0.902 6 C -0.102 4.102 7 N -0.236 5.236 8 C -0.098 4.098 9 C 0.295 3.705 10 O -0.387 6.387 11 N -0.331 5.331 12 C 0.128 3.872 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.009 4.009 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.123 5.123 25 C -0.111 4.111 26 C 0.035 3.965 27 H 0.122 0.878 28 C -0.227 4.227 29 O -0.291 6.291 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.136 0.864 46 H 0.132 0.868 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.497 -2.966 1.743 20.784 hybrid contribution 0.440 0.730 -1.376 1.618 sum -20.057 -2.236 0.367 20.185 Atomic orbital electron populations 1.22744 0.81180 1.02795 0.99814 1.87958 1.19405 1.27221 1.95352 1.22488 0.92008 0.85380 1.00763 1.22020 0.91804 0.93035 0.89546 0.90240 1.22687 0.88596 0.96964 1.01985 1.61810 1.05251 1.20970 1.35619 1.22145 0.94398 0.90928 1.02374 1.20101 0.87474 0.85122 0.77822 1.90657 1.75797 1.23745 1.48535 1.48228 1.10031 1.03807 1.71056 1.19329 0.71972 0.98591 0.97308 1.21354 0.92079 1.50408 0.92960 0.92551 1.24906 0.97214 0.94961 0.96816 1.69902 1.06245 1.49002 1.28003 0.86597 0.78247 0.78565 0.84241 1.20298 1.21189 1.20172 1.21296 0.99850 0.86948 0.92808 1.19914 1.02312 0.85223 1.01798 1.29048 0.93108 0.94834 0.93106 1.81138 1.10139 1.12349 1.08660 1.23039 1.03987 0.95144 0.88889 1.22269 0.79806 0.94441 0.99955 0.87840 1.22212 1.02104 0.98712 0.99676 1.88057 1.22169 1.81123 1.37770 0.94122 0.89606 0.94182 0.92602 0.91821 0.93926 0.89556 0.92231 0.88368 0.94798 0.93491 0.92587 0.88750 0.90897 0.87584 0.86415 0.86758 0.94691 0.92912 0.91071 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.21 10.67 -39.95 -0.43 -4.64 16 3 C 0.07 0.67 5.60 37.16 0.21 0.87 16 4 C 0.09 1.06 2.69 -26.68 -0.07 0.99 16 5 H 0.08 0.96 6.50 -51.93 -0.34 0.63 16 6 C 0.03 0.27 4.93 -3.71 -0.02 0.25 16 7 N -0.51 -6.70 3.83 -235.74 -0.90 -7.61 16 8 C 0.03 0.41 4.00 -4.98 -0.02 0.39 16 9 C 0.51 8.85 7.38 -10.99 -0.08 8.77 16 10 O -0.51 -11.15 13.90 5.56 0.08 -11.07 16 11 N -0.60 -10.40 2.46 -175.06 -0.43 -10.83 16 12 C 0.25 5.65 5.16 -5.20 -0.03 5.62 16 13 C -0.53 -13.75 9.39 -34.44 -0.32 -14.07 16 14 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 17 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 C 0.12 1.48 5.17 -4.04 -0.02 1.45 16 22 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 23 C 0.22 2.49 15.43 -20.82 -0.32 2.17 16 24 N -0.45 -6.32 18.53 42.09 0.78 -5.54 16 25 C 0.02 0.24 4.70 -3.71 -0.02 0.22 16 26 C 0.09 1.23 3.92 -26.68 -0.10 1.12 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 28 C -0.17 -2.26 8.88 37.16 0.33 -1.93 16 29 O -0.37 -5.02 10.25 -39.95 -0.41 -5.43 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.06 0.69 7.38 -51.93 -0.38 0.30 16 38 H 0.10 0.94 7.09 -51.93 -0.37 0.58 16 39 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 43 H 0.07 0.76 6.44 -51.93 -0.33 0.42 16 44 H 0.11 0.82 7.22 -51.93 -0.37 0.44 16 45 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.11 1.96 5.85 -51.93 -0.30 1.66 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.07 0.99 6.13 -51.93 -0.32 0.67 16 LS Contribution 407.46 15.07 6.14 6.14 Total: -1.00 -33.01 407.46 -7.34 -40.36 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.26 Total: -1.05 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 0.37 Total: 8.15 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.18 Total: -48.34 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.76 Total: -21.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.01 -7.34 -40.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249577272.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.208 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds