Wall clock time and date at job start Sat Apr 11 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50715 * 304.91296 * 4 3 2 6 6 C 1.53094 * 109.50568 * 184.78211 * 4 3 2 7 7 N 1.47023 * 109.25994 * 183.21763 * 6 4 3 8 8 C 1.46899 * 111.00007 * 182.39188 * 7 6 4 9 9 C 1.50701 * 109.46760 * 170.32210 * 8 7 6 10 10 O 1.21276 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99799 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00093 * 179.97438 * 11 9 8 13 13 C 1.50693 * 109.47192 * 89.99835 * 12 11 9 14 14 H 1.08001 * 120.00313 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99961 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00326 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00016 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47305 * 59.99847 * 17 15 13 19 19 H 1.48501 * 109.47180 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46920 * 299.99966 * 17 15 13 21 21 C 1.46501 * 120.00027 * 359.97438 * 11 9 8 22 22 C 1.52999 * 109.47277 * 89.99775 * 21 11 9 23 23 C 1.47202 * 109.47068 * 179.97438 * 22 21 11 24 24 N 8.98903 * 151.42208 * 208.77769 * 3 1 2 25 25 C 1.47024 * 110.75031 * 58.61551 * 7 6 4 26 26 C 1.53091 * 109.25658 * 301.38586 * 25 7 6 27 27 H 1.08998 * 109.54397 * 176.80908 * 26 25 7 28 28 C 1.53001 * 109.50825 * 296.91709 * 26 25 7 29 29 O 1.43015 * 109.26009 * 56.84799 * 26 25 7 30 30 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 33 33 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 34 34 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 35 35 H 1.09005 * 109.50748 * 303.15089 * 6 4 3 36 36 H 1.08994 * 109.51080 * 63.28149 * 6 4 3 37 37 H 1.09007 * 109.47106 * 290.31813 * 8 7 6 38 38 H 1.08996 * 109.47231 * 50.31901 * 8 7 6 39 39 H 1.09004 * 109.46991 * 210.00230 * 12 11 9 40 40 H 1.08999 * 109.46657 * 329.99935 * 12 11 9 41 41 H 0.96994 * 120.00217 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.47233 * 210.00042 * 21 11 9 43 43 H 1.08999 * 109.47380 * 329.99548 * 21 11 9 44 44 H 1.08998 * 109.47457 * 299.99954 * 22 21 11 45 45 H 1.09007 * 109.46957 * 60.00239 * 22 21 11 46 46 H 1.08997 * 109.50479 * 181.45163 * 25 7 6 47 47 H 1.08998 * 109.50748 * 61.32045 * 25 7 6 48 48 H 1.09001 * 109.47594 * 179.78690 * 28 26 25 49 49 H 1.09000 * 109.46794 * 299.78092 * 28 26 25 50 50 H 1.08996 * 109.47340 * 59.78152 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8515 0.5699 0.8434 6 6 4.1585 2.5779 0.1210 7 7 5.6222 2.4629 0.0435 8 6 6.2629 3.7740 0.2119 9 6 7.7508 3.5900 0.3648 10 8 8.2302 2.4763 0.3368 11 7 8.5488 4.6630 0.5327 12 6 9.9952 4.4841 0.6820 13 6 10.6491 4.5256 -0.6750 14 1 10.0476 4.6711 -1.5601 15 6 12.0155 4.3788 -0.7865 16 7 12.7481 4.2022 0.2913 17 14 12.8263 4.4310 -2.4687 18 1 12.5528 5.7423 -3.1096 19 1 14.2924 4.2495 -2.3174 20 1 12.2781 3.3418 -3.3163 21 6 7.9698 6.0084 0.5660 22 6 7.6077 6.3723 2.0073 23 6 7.0266 7.7243 2.0408 24 7 6.5779 8.7656 2.0700 25 6 6.0292 1.8363 -1.2228 26 6 5.3873 0.4505 -1.3295 27 1 5.6399 0.0048 -2.2916 28 6 5.9074 -0.4418 -0.2008 29 8 3.9671 0.5788 -1.2208 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.7995 3.2087 -0.6923 36 1 3.8784 3.0207 1.0767 37 1 6.0613 4.3920 -0.6631 38 1 5.8638 4.2619 1.1011 39 1 10.3978 5.2836 1.3040 40 1 10.1955 3.5216 1.1526 41 1 13.7093 4.0986 0.2127 42 1 8.6949 6.7256 0.1813 43 1 7.0719 6.0329 -0.0514 44 1 6.8826 5.6551 2.3920 45 1 8.5057 6.3478 2.6248 46 1 7.1144 1.7376 -1.2477 47 1 5.7000 2.4552 -2.0574 48 1 5.4472 -1.4271 -0.2751 49 1 6.9898 -0.5393 -0.2842 50 1 5.6559 0.0051 0.7610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249577272.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:59 Heat of formation + Delta-G solvation = -105.618898 kcal Electronic energy + Delta-G solvation = -30612.570976 eV Core-core repulsion = 26446.914306 eV Total energy + Delta-G solvation = -4165.656670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.35422 -40.32073 -38.57245 -37.98180 -36.81895 -36.26665 -34.82579 -33.79155 -32.13240 -31.35878 -29.82303 -28.25890 -27.97597 -26.53471 -25.28632 -24.95268 -23.87301 -23.23049 -20.47038 -19.88646 -18.78426 -18.30701 -18.10348 -17.68765 -17.47233 -17.25054 -16.94040 -16.58391 -16.21924 -16.00925 -15.92327 -15.62268 -15.41647 -15.38211 -15.00255 -14.65649 -14.50481 -14.24113 -14.11957 -13.69183 -13.52228 -13.42932 -13.27859 -13.19187 -13.03103 -12.87027 -12.77510 -12.69491 -12.55426 -12.49001 -12.42910 -12.14449 -12.11209 -11.99942 -11.77337 -11.65344 -11.25654 -10.74033 -10.57601 -10.56639 -10.28253 -9.40893 -9.26648 -8.15982 -6.27979 1.40302 1.43017 1.49439 1.72709 1.87736 1.96316 2.19844 2.43446 2.68542 2.74159 3.06172 3.14859 3.20887 3.77680 3.87996 3.99299 4.03705 4.07963 4.12661 4.15708 4.18812 4.32354 4.39255 4.41990 4.48387 4.50088 4.55050 4.61206 4.63446 4.65954 4.73743 4.84839 4.88281 4.90314 4.95862 5.03491 5.08681 5.12013 5.16877 5.37859 5.40891 5.64410 5.83878 5.92691 6.01439 6.15943 6.21784 6.34182 6.63391 6.79704 6.87103 7.37857 7.61449 8.90187 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010586 B = 0.003104 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.421013 B = 9019.221952 C =11078.931718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.073 3.927 4 C 0.088 3.912 5 H 0.066 0.934 6 C 0.031 3.969 7 N -0.528 5.528 8 C 0.043 3.957 9 C 0.502 3.498 10 O -0.566 6.566 11 N -0.600 5.600 12 C 0.263 3.737 13 C -0.537 4.537 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.954 3.046 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.279 1.279 21 C 0.114 3.886 22 C -0.038 4.038 23 C 0.247 3.753 24 N -0.490 5.490 25 C 0.024 3.976 26 C 0.095 3.905 27 H 0.109 0.891 28 C -0.160 4.160 29 O -0.384 6.384 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.032 0.968 40 H 0.004 0.996 41 H 0.265 0.735 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.139 0.861 45 H 0.119 0.881 46 H 0.078 0.922 47 H 0.039 0.961 48 H 0.059 0.941 49 H 0.053 0.947 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.124 -2.071 1.257 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.004 4.004 4 C 0.030 3.970 5 H 0.084 0.916 6 C -0.097 4.097 7 N -0.253 5.253 8 C -0.087 4.087 9 C 0.290 3.710 10 O -0.444 6.444 11 N -0.332 5.332 12 C 0.141 3.859 13 C -0.575 4.575 14 H 0.070 0.930 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.780 3.220 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.205 1.205 21 C -0.011 4.011 22 C -0.079 4.079 23 C -0.071 4.071 24 N -0.168 5.168 25 C -0.104 4.104 26 C 0.037 3.963 27 H 0.126 0.874 28 C -0.218 4.218 29 O -0.304 6.304 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.157 0.843 39 H 0.050 0.950 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.157 0.843 45 H 0.137 0.863 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.212 -1.650 1.592 23.325 hybrid contribution 1.229 0.280 -1.302 1.812 sum -21.983 -1.370 0.290 22.027 Atomic orbital electron populations 1.22913 0.79435 1.03662 1.00953 1.87908 1.21434 1.28366 1.95621 1.22556 0.90408 0.85140 1.02320 1.22222 0.93358 0.93317 0.88138 0.91588 1.22755 0.86286 0.96587 1.04053 1.61735 1.07234 1.21445 1.34917 1.22143 0.90220 0.91255 1.05063 1.21047 0.89616 0.84054 0.76246 1.90647 1.77192 1.25912 1.50654 1.48088 1.07945 1.06127 1.71012 1.18745 0.75587 0.96101 0.95423 1.21706 0.92368 1.49371 0.94103 0.92962 1.25694 0.98082 0.94924 1.00052 1.70011 1.06384 1.50311 1.29859 0.85671 0.77270 0.78841 0.80247 1.18897 1.20907 1.20495 1.21501 1.00475 0.83886 0.95221 1.19848 1.03218 0.84930 0.99912 1.29088 0.91797 0.94455 0.91726 1.81185 1.11927 1.13667 1.10050 1.22822 1.01767 0.95954 0.89872 1.22211 0.80103 0.93992 0.99973 0.87359 1.22101 1.00932 0.99197 0.99535 1.88047 1.21683 1.81603 1.39058 0.93405 0.89040 0.92535 0.92098 0.89020 0.92739 0.86534 0.90206 0.84263 0.94989 0.97831 0.92648 0.90071 0.87694 0.84322 0.86346 0.90372 0.94288 0.92202 0.92806 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.39 10.67 -144.47 -1.54 -9.93 16 3 C 0.07 1.16 5.60 71.98 0.40 1.56 16 4 C 0.09 1.79 2.69 30.63 0.08 1.87 16 5 H 0.07 1.52 6.50 -2.39 -0.02 1.50 16 6 C 0.03 0.53 4.93 86.31 0.43 0.95 16 7 N -0.53 -12.74 3.83 -899.76 -3.45 -16.18 16 8 C 0.04 0.95 4.00 85.56 0.34 1.29 16 9 C 0.50 17.08 7.38 87.66 0.65 17.73 16 10 O -0.57 -25.43 13.90 -3.02 -0.04 -25.47 16 11 N -0.60 -20.39 2.46 -826.16 -2.03 -22.42 16 12 C 0.26 12.35 5.16 85.63 0.44 12.79 16 13 C -0.54 -28.39 9.39 25.60 0.24 -28.15 16 14 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 15 C 0.01 0.64 5.46 84.65 0.46 1.10 16 16 N -0.93 -53.32 13.29 21.45 0.28 -53.04 16 17 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 C 0.11 2.57 5.17 86.38 0.45 3.02 16 22 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 23 C 0.25 4.95 15.43 89.46 1.38 6.33 16 24 N -0.49 -12.87 18.53 19.99 0.37 -12.50 16 25 C 0.02 0.67 4.70 86.31 0.41 1.08 16 26 C 0.09 2.50 3.92 30.63 0.12 2.62 16 27 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 28 C -0.16 -4.39 8.88 71.98 0.64 -3.75 16 29 O -0.38 -9.95 10.25 -144.47 -1.48 -11.44 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.12 1.31 8.09 -2.39 -0.02 1.29 16 37 H 0.08 1.48 7.38 -2.38 -0.02 1.47 16 38 H 0.14 1.90 7.09 -2.39 -0.02 1.88 16 39 H 0.03 1.50 8.07 -2.38 -0.02 1.48 16 40 H 0.00 0.20 7.42 -2.39 -0.02 0.18 16 41 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.08 2.08 8.07 -2.38 -0.02 2.06 16 43 H 0.10 1.73 6.44 -2.39 -0.02 1.72 16 44 H 0.14 1.45 7.22 -2.39 -0.02 1.44 16 45 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.08 2.80 5.85 -2.39 -0.01 2.78 16 47 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.06 1.80 6.13 -2.39 -0.01 1.78 16 Total: -1.00 -75.85 407.46 2.53 -73.32 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.93 Total: 12.79 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 7.46 Total: 19.56 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -4.82 Total: -104.13 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -3.06 Total: -46.84 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -75.85 2.53 -73.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249577272.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.295 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds