Wall clock time and date at job start Sat Apr 11 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.50702 * 109.46638 * 184.99859 * 4 2 1 6 6 O 1.21277 * 120.00201 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99943 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00017 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47289 * 180.02562 * 8 7 5 10 10 O 1.21298 * 119.99758 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00115 * 179.97438 * 9 8 7 12 12 C 1.37105 * 120.00019 * 179.97438 * 11 9 8 13 13 H 1.07996 * 119.99328 * 359.97438 * 12 11 9 14 14 C 1.38945 * 120.00003 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00310 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00098 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46871 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47359 * 119.99561 * 16 14 12 19 19 H 1.48497 * 109.47413 * 240.00216 * 16 14 12 20 20 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 21 21 C 1.34777 * 119.99525 * 84.99977 * 20 2 1 22 22 O 1.21283 * 120.00463 * 0.02562 * 21 20 2 23 23 C 1.50700 * 119.99675 * 179.72583 * 21 20 2 24 24 C 1.52998 * 109.47092 * 300.27576 * 23 21 20 25 25 C 1.53005 * 109.47342 * 180.02562 * 24 23 21 26 26 C 1.52996 * 109.46953 * 60.00128 * 25 24 23 27 27 C 1.52998 * 109.46992 * 300.00086 * 26 25 24 28 28 C 1.52997 * 109.47441 * 60.00327 * 27 26 25 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 0.97000 * 120.00002 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.46872 * 299.99622 * 8 7 5 36 36 H 1.08997 * 109.47792 * 59.99670 * 8 7 5 37 37 H 0.97004 * 120.00109 * 359.97438 * 11 9 8 38 38 H 0.96996 * 120.00363 * 180.02562 * 15 14 12 39 39 H 0.97000 * 120.00580 * 265.00723 * 20 2 1 40 40 H 1.08998 * 109.47585 * 60.27844 * 23 21 20 41 41 H 1.09006 * 109.47458 * 299.99989 * 24 23 21 42 42 H 1.09004 * 109.47239 * 60.00118 * 24 23 21 43 43 H 1.09006 * 109.46726 * 300.00303 * 25 24 23 44 44 H 1.08994 * 109.47101 * 180.02562 * 25 24 23 45 45 H 1.09005 * 109.47125 * 180.02562 * 26 25 24 46 46 H 1.08998 * 109.47408 * 60.00223 * 26 25 24 47 47 H 1.09001 * 109.47857 * 299.99697 * 27 26 25 48 48 H 1.09004 * 109.47239 * 180.02562 * 27 26 25 49 49 H 1.09000 * 109.47849 * 179.97438 * 28 27 26 50 50 H 1.08998 * 109.47443 * 59.99604 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6148 1.3129 6 8 4.1450 -0.0204 0.4447 7 7 4.2149 -1.1803 2.3345 8 6 5.6748 -1.0765 2.3966 9 6 6.1773 -1.7880 3.6264 10 8 5.3928 -2.3282 4.3775 11 7 7.4981 -1.8240 3.8917 12 6 7.9552 -2.4708 5.0109 13 1 7.2566 -2.9510 5.6800 14 6 9.3169 -2.5075 5.2847 15 7 10.1667 -1.9218 4.4712 16 14 9.9396 -3.3881 6.8098 17 1 8.7895 -3.9593 7.5557 18 1 10.8618 -4.4806 6.4088 19 1 10.6621 -2.4239 7.6778 20 7 2.0185 -0.6908 -1.1960 21 6 2.1472 -0.0185 -2.3570 22 8 1.8591 1.1584 -2.4116 23 6 2.6554 -0.7275 -3.5859 24 6 4.0568 -1.2780 -3.3141 25 6 4.5732 -1.9973 -4.5619 26 6 4.6300 -1.0125 -5.7314 27 6 3.2286 -0.4620 -6.0032 28 6 2.7123 0.2573 -4.7555 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.7325 -1.6554 3.0292 35 1 6.1097 -1.5355 1.5087 36 1 5.9630 -0.0262 2.4408 37 1 8.1255 -1.3923 3.2908 38 1 11.1174 -1.9477 4.6621 39 1 2.2491 -1.6319 -1.1524 40 1 1.9842 -1.5494 -3.8349 41 1 4.7281 -0.4560 -3.0651 42 1 4.0164 -1.9793 -2.4806 43 1 3.9020 -2.8192 -4.8113 44 1 5.5713 -2.3898 -4.3681 45 1 4.9975 -1.5250 -6.6205 46 1 5.3011 -0.1906 -5.4820 47 1 2.5574 -1.2838 -6.2526 48 1 3.2690 0.2393 -6.8367 49 1 1.7141 0.6499 -4.9492 50 1 3.3834 1.0792 -4.5060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343546486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:30 Heat of formation + Delta-G solvation = -149.121799 kcal Electronic energy + Delta-G solvation = -29668.318128 eV Core-core repulsion = 25500.775031 eV Total energy + Delta-G solvation = -4167.543098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47202 -39.57037 -38.27864 -37.72702 -35.75795 -34.46372 -33.69787 -32.33361 -31.43133 -30.94829 -30.56657 -28.93622 -26.94410 -24.56066 -24.07980 -22.78145 -21.69138 -20.53186 -20.19641 -19.82320 -19.58576 -18.17221 -17.39808 -17.07622 -16.54020 -15.69553 -15.58936 -15.39643 -15.25276 -14.81480 -14.52994 -14.42751 -14.26133 -14.11773 -13.99504 -13.89056 -13.51534 -13.16761 -12.83239 -12.71599 -12.44703 -12.40890 -12.28463 -12.22335 -12.03360 -11.78284 -11.67201 -11.48278 -11.33389 -11.17802 -11.16780 -10.84688 -10.63347 -10.44420 -10.36506 -10.31926 -9.74940 -9.68960 -9.63857 -9.09089 -8.83073 -8.68285 -8.14596 -6.55567 -3.97866 2.66902 2.77464 3.07104 3.13985 3.19116 3.24158 3.32088 3.69268 4.07713 4.41044 4.44487 4.50405 4.54889 4.76256 4.83721 4.94508 4.97988 4.99685 5.03733 5.12963 5.17291 5.22927 5.27034 5.28890 5.30339 5.39300 5.39546 5.52273 5.60043 5.80657 5.84232 5.86638 5.88454 5.90510 5.91352 5.99034 6.00531 6.02476 6.04830 6.08974 6.23847 6.46115 6.63139 7.42223 7.47251 7.75749 7.87905 8.25655 8.38444 8.42514 9.00433 9.34801 9.82292 10.61311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.002224 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.842467 B =12589.313296 C =14246.425978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.096 0.904 4 C -0.151 4.151 5 C 0.505 3.495 6 O -0.537 6.537 7 N -0.709 5.709 8 C 0.110 3.890 9 C 0.427 3.573 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.714 5.714 21 C 0.525 3.475 22 O -0.543 6.543 23 C -0.104 4.104 24 C -0.108 4.108 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.098 4.098 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.410 0.590 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.396 0.604 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.695 0.223 -16.916 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.114 0.886 4 C -0.192 4.192 5 C 0.291 3.709 6 O -0.414 6.414 7 N -0.363 5.363 8 C -0.018 4.018 9 C 0.213 3.787 10 O -0.485 6.485 11 N -0.184 5.184 12 C -0.434 4.434 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.365 5.365 21 C 0.311 3.689 22 O -0.420 6.420 23 C -0.126 4.126 24 C -0.146 4.146 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.156 4.156 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.742 1.160 -17.033 23.223 hybrid contribution 0.799 -0.916 0.918 1.524 sum -14.943 0.244 -16.115 21.979 Atomic orbital electron populations 1.22187 0.94911 1.02165 1.02825 1.20639 0.93221 0.98164 0.82667 0.88592 1.22040 0.93173 1.03613 1.00339 1.20517 0.89770 0.79046 0.81612 1.90737 1.70097 1.42092 1.38514 1.45753 1.07377 1.56314 1.26863 1.20924 0.81027 1.01442 0.98403 1.19758 0.83786 0.86793 0.88381 1.90495 1.55200 1.51453 1.51373 1.41818 1.05137 1.47690 1.23706 1.19778 0.91768 1.30703 1.01193 0.87614 1.25335 0.95735 0.97439 0.99229 1.69621 1.03455 1.43075 1.37262 0.85756 0.78874 0.78835 0.80627 1.19123 1.20581 1.20583 1.45883 1.67457 1.13655 1.09514 1.20542 0.76719 0.87142 0.84464 1.90670 1.50248 1.15939 1.85134 1.21339 0.98408 0.99238 0.93582 1.21498 0.94612 1.00560 0.97952 1.21531 1.01370 0.97947 0.94684 1.21569 0.97186 0.99135 0.98101 1.21555 0.96660 0.99907 0.97512 1.21332 1.02174 0.97346 0.92787 0.91804 0.92394 0.91446 0.87283 0.88362 0.75203 0.90002 0.89970 0.77044 0.91595 0.77003 0.88986 0.90969 0.91527 0.91959 0.91546 0.92069 0.91787 0.92091 0.91809 0.91461 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.16 1.65 2.13 -67.93 -0.15 1.51 16 3 H 0.10 1.31 7.39 -51.93 -0.38 0.93 16 4 C -0.15 -1.41 5.24 -27.88 -0.15 -1.55 16 5 C 0.51 6.98 7.69 -10.98 -0.08 6.89 16 6 O -0.54 -9.19 15.35 5.56 0.09 -9.11 16 7 N -0.71 -10.74 5.53 -61.47 -0.34 -11.08 16 8 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 9 C 0.43 9.52 7.85 -10.99 -0.09 9.43 16 10 O -0.60 -14.88 15.24 5.54 0.08 -14.79 16 11 N -0.55 -13.37 5.29 -10.96 -0.06 -13.43 16 12 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 13 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 15 N -0.89 -23.64 13.05 55.50 0.72 -22.91 16 16 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 N -0.71 -7.45 4.11 -53.80 -0.22 -7.67 16 21 C 0.52 6.45 7.12 -10.98 -0.08 6.37 16 22 O -0.54 -8.70 15.64 5.55 0.09 -8.61 16 23 C -0.10 -0.99 2.53 -91.77 -0.23 -1.22 16 24 C -0.11 -1.03 5.10 -26.73 -0.14 -1.17 16 25 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 26 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 27 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 28 C -0.10 -0.95 4.49 -26.73 -0.12 -1.07 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.41 6.07 7.44 -40.82 -0.30 5.76 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.40 3.36 8.01 -40.82 -0.33 3.03 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.62 7.55 -51.93 -0.39 0.23 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 50 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 LS Contribution 407.92 15.07 6.15 6.15 Total: -1.00 -32.87 407.92 -8.36 -41.23 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -8.42 Total: 15.86 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -1.42 Total: 9.12 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.11 Total: -55.09 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: 0.26 Total: -32.51 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.87 -8.36 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.890 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds