Wall clock time and date at job start Sat Apr 11 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.50702 * 109.46638 * 184.99859 * 4 2 1 6 6 O 1.21277 * 120.00201 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99943 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00017 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47289 * 180.02562 * 8 7 5 10 10 O 1.21298 * 119.99758 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00115 * 179.97438 * 9 8 7 12 12 C 1.37105 * 120.00019 * 179.97438 * 11 9 8 13 13 H 1.07996 * 119.99328 * 359.97438 * 12 11 9 14 14 C 1.38945 * 120.00003 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00310 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00098 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46871 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47359 * 119.99561 * 16 14 12 19 19 H 1.48497 * 109.47413 * 240.00216 * 16 14 12 20 20 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 21 21 C 1.34777 * 119.99525 * 84.99977 * 20 2 1 22 22 O 1.21283 * 120.00463 * 0.02562 * 21 20 2 23 23 C 1.50700 * 119.99675 * 179.72583 * 21 20 2 24 24 C 1.52998 * 109.47092 * 300.27576 * 23 21 20 25 25 C 1.53005 * 109.47342 * 180.02562 * 24 23 21 26 26 C 1.52996 * 109.46953 * 60.00128 * 25 24 23 27 27 C 1.52998 * 109.46992 * 300.00086 * 26 25 24 28 28 C 1.52997 * 109.47441 * 60.00327 * 27 26 25 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 0.97000 * 120.00002 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.46872 * 299.99622 * 8 7 5 36 36 H 1.08997 * 109.47792 * 59.99670 * 8 7 5 37 37 H 0.97004 * 120.00109 * 359.97438 * 11 9 8 38 38 H 0.96996 * 120.00363 * 180.02562 * 15 14 12 39 39 H 0.97000 * 120.00580 * 265.00723 * 20 2 1 40 40 H 1.08998 * 109.47585 * 60.27844 * 23 21 20 41 41 H 1.09006 * 109.47458 * 299.99989 * 24 23 21 42 42 H 1.09004 * 109.47239 * 60.00118 * 24 23 21 43 43 H 1.09006 * 109.46726 * 300.00303 * 25 24 23 44 44 H 1.08994 * 109.47101 * 180.02562 * 25 24 23 45 45 H 1.09005 * 109.47125 * 180.02562 * 26 25 24 46 46 H 1.08998 * 109.47408 * 60.00223 * 26 25 24 47 47 H 1.09001 * 109.47857 * 299.99697 * 27 26 25 48 48 H 1.09004 * 109.47239 * 180.02562 * 27 26 25 49 49 H 1.09000 * 109.47849 * 179.97438 * 28 27 26 50 50 H 1.08998 * 109.47443 * 59.99604 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6148 1.3129 6 8 4.1450 -0.0204 0.4447 7 7 4.2149 -1.1803 2.3345 8 6 5.6748 -1.0765 2.3966 9 6 6.1773 -1.7880 3.6264 10 8 5.3928 -2.3282 4.3775 11 7 7.4981 -1.8240 3.8917 12 6 7.9552 -2.4708 5.0109 13 1 7.2566 -2.9510 5.6800 14 6 9.3169 -2.5075 5.2847 15 7 10.1667 -1.9218 4.4712 16 14 9.9396 -3.3881 6.8098 17 1 8.7895 -3.9593 7.5557 18 1 10.8618 -4.4806 6.4088 19 1 10.6621 -2.4239 7.6778 20 7 2.0185 -0.6908 -1.1960 21 6 2.1472 -0.0185 -2.3570 22 8 1.8591 1.1584 -2.4116 23 6 2.6554 -0.7275 -3.5859 24 6 4.0568 -1.2780 -3.3141 25 6 4.5732 -1.9973 -4.5619 26 6 4.6300 -1.0125 -5.7314 27 6 3.2286 -0.4620 -6.0032 28 6 2.7123 0.2573 -4.7555 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.7325 -1.6554 3.0292 35 1 6.1097 -1.5355 1.5087 36 1 5.9630 -0.0262 2.4408 37 1 8.1255 -1.3923 3.2908 38 1 11.1174 -1.9477 4.6621 39 1 2.2491 -1.6319 -1.1524 40 1 1.9842 -1.5494 -3.8349 41 1 4.7281 -0.4560 -3.0651 42 1 4.0164 -1.9793 -2.4806 43 1 3.9020 -2.8192 -4.8113 44 1 5.5713 -2.3898 -4.3681 45 1 4.9975 -1.5250 -6.6205 46 1 5.3011 -0.1906 -5.4820 47 1 2.5574 -1.2838 -6.2526 48 1 3.2690 0.2393 -6.8367 49 1 1.7141 0.6499 -4.9492 50 1 3.3834 1.0792 -4.5060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343546486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:30 Heat of formation + Delta-G solvation = -172.709300 kcal Electronic energy + Delta-G solvation = -29669.340959 eV Core-core repulsion = 25500.775031 eV Total energy + Delta-G solvation = -4168.565928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44809 -40.80539 -39.90552 -38.58267 -36.75050 -36.20713 -35.22390 -33.39859 -33.17465 -31.66902 -31.36511 -30.04949 -28.23695 -26.28704 -24.94727 -23.48758 -22.58547 -21.40010 -21.37121 -21.27111 -20.57034 -20.07157 -18.61945 -18.10000 -17.48596 -17.23240 -16.87398 -16.64842 -16.36462 -16.32190 -15.75697 -15.64959 -15.37868 -15.10854 -15.02960 -14.93746 -14.68462 -14.12255 -13.87569 -13.73805 -13.57852 -13.55389 -13.49279 -13.16313 -13.08204 -12.95762 -12.82848 -12.79276 -12.45576 -12.22779 -12.11698 -12.05045 -11.96814 -11.58725 -11.53788 -11.35276 -11.01353 -10.94518 -10.57997 -10.56438 -10.17909 -10.08530 -9.98141 -8.52253 -6.02551 1.34379 1.42504 1.56388 1.65245 1.73166 1.90413 2.05610 2.31037 2.32112 3.13125 3.15129 3.63214 3.66915 3.73693 3.80188 3.81708 4.19680 4.23217 4.25492 4.29335 4.30641 4.39571 4.42326 4.46266 4.50662 4.56545 4.59299 4.63778 4.68565 4.71075 4.84586 4.96295 5.08882 5.12490 5.17849 5.24098 5.25592 5.31149 5.32596 5.35230 5.38205 5.39516 5.54370 5.62175 5.91082 6.45246 6.56588 6.64064 7.02576 7.24193 7.35711 7.43899 7.93015 8.64907 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.002224 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.842467 B =12589.313296 C =14246.425978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 H 0.057 0.943 4 C -0.138 4.138 5 C 0.506 3.494 6 O -0.573 6.573 7 N -0.708 5.708 8 C 0.123 3.877 9 C 0.433 3.567 10 O -0.623 6.623 11 N -0.562 5.562 12 C -0.335 4.335 13 H 0.087 0.913 14 C -0.012 4.012 15 N -0.918 5.918 16 Si 0.997 3.003 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.273 1.273 20 N -0.706 5.706 21 C 0.516 3.484 22 O -0.589 6.589 23 C -0.098 4.098 24 C -0.104 4.104 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.112 4.112 28 C -0.097 4.097 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.415 0.585 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.398 0.602 38 H 0.279 0.721 39 H 0.408 0.592 40 H 0.122 0.878 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.858 -1.695 -17.107 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 H 0.075 0.925 4 C -0.178 4.178 5 C 0.294 3.706 6 O -0.452 6.452 7 N -0.363 5.363 8 C -0.005 4.005 9 C 0.221 3.779 10 O -0.511 6.511 11 N -0.197 5.197 12 C -0.464 4.464 13 H 0.105 0.895 14 C -0.213 4.213 15 N -0.558 5.558 16 Si 0.820 3.180 17 H -0.193 1.193 18 H -0.196 1.196 19 H -0.198 1.198 20 N -0.357 5.357 21 C 0.304 3.696 22 O -0.470 6.470 23 C -0.119 4.119 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.161 4.161 27 C -0.150 4.150 28 C -0.135 4.135 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.253 0.747 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.244 0.756 40 H 0.140 0.860 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.918 -0.781 -17.223 24.155 hybrid contribution 1.122 -0.269 0.968 1.506 sum -15.796 -1.050 -16.256 22.691 Atomic orbital electron populations 1.22097 0.92761 1.03581 1.02643 1.20643 0.94768 0.96334 0.83159 0.92513 1.22080 0.89231 1.05866 1.00632 1.21302 0.91505 0.77559 0.80264 1.90741 1.71283 1.43478 1.39744 1.45768 1.06115 1.56818 1.27564 1.20692 0.82861 1.00869 0.96101 1.20453 0.82933 0.85580 0.88978 1.90472 1.55689 1.52274 1.52625 1.41885 1.05994 1.48247 1.23565 1.19773 0.92200 1.32224 1.02250 0.89471 1.26139 0.95438 0.97767 1.01909 1.69686 1.03869 1.43662 1.38555 0.84811 0.78155 0.77923 0.77108 1.19292 1.19611 1.19784 1.45876 1.66574 1.14132 1.09104 1.21104 0.76083 0.86766 0.85671 1.90645 1.52406 1.17974 1.85941 1.21361 0.98767 0.99627 0.92134 1.21444 0.93952 0.99616 0.99156 1.21528 1.01719 0.98235 0.93685 1.21584 0.97020 0.98779 0.98699 1.21528 0.96765 1.00345 0.96340 1.21300 1.01212 0.96932 0.94095 0.93794 0.90067 0.89886 0.84723 0.84868 0.74693 0.89074 0.89626 0.76832 0.91100 0.75630 0.86026 0.94185 0.91141 0.89930 0.91635 0.90456 0.93358 0.90251 0.91261 0.92061 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.48 71.98 0.68 -1.54 16 2 C 0.16 3.09 2.13 45.00 0.10 3.19 16 3 H 0.06 1.60 7.39 -2.39 -0.02 1.58 16 4 C -0.14 -2.20 5.24 29.85 0.16 -2.05 16 5 C 0.51 13.30 7.69 87.66 0.67 13.97 16 6 O -0.57 -19.60 15.35 -3.02 -0.05 -19.65 16 7 N -0.71 -20.49 5.53 -466.79 -2.58 -23.07 16 8 C 0.12 4.28 6.15 85.64 0.53 4.81 16 9 C 0.43 19.34 7.85 87.66 0.69 20.02 16 10 O -0.62 -30.91 15.24 -3.09 -0.05 -30.95 16 11 N -0.56 -27.72 5.29 -306.98 -1.62 -29.35 16 12 C -0.34 -18.18 9.68 84.04 0.81 -17.36 16 13 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 14 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 15 N -0.92 -48.45 13.05 21.66 0.28 -48.17 16 16 Si 1.00 41.21 29.55 68.60 2.03 43.24 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 N -0.71 -14.11 4.11 -442.52 -1.82 -15.93 16 21 C 0.52 12.87 7.12 87.66 0.62 13.50 16 22 O -0.59 -19.90 15.64 -3.04 -0.05 -19.95 16 23 C -0.10 -1.80 2.53 -11.54 -0.03 -1.83 16 24 C -0.10 -1.93 5.10 30.60 0.16 -1.78 16 25 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 26 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 27 C -0.11 -1.55 5.92 30.59 0.18 -1.37 16 28 C -0.10 -1.90 4.49 30.59 0.14 -1.77 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.41 11.53 7.44 -92.71 -0.69 10.84 16 35 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 38 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 39 H 0.41 6.11 8.01 -92.71 -0.74 5.37 16 40 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.07 1.23 7.55 -2.38 -0.02 1.22 16 43 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 50 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -73.79 407.92 0.49 -73.30 By element: Atomic # 1 Polarization: 47.10 SS G_CDS: -1.20 Total: 45.90 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 5.54 Total: 24.62 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -5.74 Total: -116.52 kcal Atomic # 8 Polarization: -70.41 SS G_CDS: -0.14 Total: -70.55 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -73.79 0.49 -73.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.407 kcal (2) G-P(sol) polarization free energy of solvation -73.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds