Wall clock time and date at job start Sat Apr 11 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.86739 * 2 1 4 4 C 1.54319 * 109.88612 * 238.97858 * 2 1 3 5 5 C 1.55158 * 102.94024 * 262.62345 * 4 2 1 6 6 H 1.08997 * 111.00897 * 82.61090 * 5 4 2 7 7 N 1.46906 * 111.00203 * 206.42379 * 5 4 2 8 8 C 1.46901 * 110.99793 * 205.00024 * 7 5 4 9 9 C 1.50701 * 109.46921 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99849 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99707 * 180.02562 * 11 9 8 13 13 H 1.08002 * 119.99704 * 359.97438 * 12 11 9 14 14 C 1.38941 * 119.99927 * 180.02562 * 12 11 9 15 15 N 1.31417 * 120.00180 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00273 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47268 * 89.99721 * 16 14 12 18 18 H 1.48498 * 109.47211 * 209.99980 * 16 14 12 19 19 H 1.48505 * 109.46734 * 329.99774 * 16 14 12 20 20 C 1.54909 * 101.58117 * 324.49744 * 5 4 2 21 21 N 1.47024 * 110.00845 * 121.08952 * 2 1 3 22 22 C 1.34773 * 125.65014 * 300.50972 * 21 2 1 23 23 O 1.21371 * 120.00037 * 359.97438 * 22 21 2 24 24 C 1.49086 * 120.00108 * 180.02562 * 22 21 2 25 25 O 1.20786 * 119.99679 * 359.97438 * 24 22 21 26 26 C 1.50702 * 120.00171 * 179.97438 * 24 22 21 27 27 C 1.53003 * 109.46968 * 179.97438 * 26 24 22 28 28 C 1.52994 * 109.47378 * 299.99919 * 26 24 22 29 29 C 1.52997 * 109.46772 * 60.00157 * 26 24 22 30 30 H 1.09006 * 109.47136 * 181.01890 * 1 2 3 31 31 H 1.09001 * 109.47394 * 301.02086 * 1 2 3 32 32 H 1.09003 * 109.46789 * 61.02327 * 1 2 3 33 33 H 1.09000 * 110.71971 * 144.25536 * 4 2 1 34 34 H 1.09000 * 110.71871 * 20.97980 * 4 2 1 35 35 H 1.00898 * 110.99995 * 328.95102 * 7 5 4 36 36 H 1.09002 * 109.47401 * 59.99808 * 8 7 5 37 37 H 1.09001 * 109.46874 * 299.99821 * 8 7 5 38 38 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 39 39 H 0.97000 * 119.99884 * 180.02562 * 15 14 12 40 40 H 1.08998 * 110.36826 * 155.85497 * 20 5 4 41 41 H 1.09004 * 110.36440 * 278.17096 * 20 5 4 42 42 H 1.09002 * 109.46751 * 60.00535 * 27 26 24 43 43 H 1.08998 * 109.46744 * 179.97438 * 27 26 24 44 44 H 1.08994 * 109.47560 * 300.00680 * 27 26 24 45 45 H 1.09007 * 109.47182 * 59.99795 * 28 26 24 46 46 H 1.08998 * 109.47491 * 179.97438 * 28 26 24 47 47 H 1.09002 * 109.47306 * 300.00055 * 28 26 24 48 48 H 1.09003 * 109.47539 * 60.00040 * 29 26 24 49 49 H 1.09003 * 109.47458 * 179.97438 * 29 26 24 50 50 H 1.09000 * 109.47249 * 299.99489 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2436 5 6 2.3557 -2.1674 -0.6942 6 1 1.4506 -2.7738 -0.6619 7 7 3.4009 -2.8284 -1.4871 8 6 3.2884 -4.2900 -1.3922 9 6 4.3741 -4.9319 -2.2170 10 8 5.1641 -4.2399 -2.8238 11 7 4.4679 -6.2750 -2.2795 12 6 5.4559 -6.8590 -3.0295 13 1 6.1588 -6.2427 -3.5704 14 6 5.5523 -8.2435 -3.0944 15 7 4.6967 -8.9933 -2.4366 16 14 6.8989 -9.0393 -4.1156 17 1 8.1043 -9.2433 -3.2726 18 1 6.4239 -10.3505 -4.6257 19 1 7.2390 -8.1565 -5.2604 20 6 2.8617 -1.8471 0.7345 21 7 2.0331 -0.7134 1.1831 22 6 1.7794 -0.3847 2.4653 23 8 1.0811 0.5750 2.7190 24 6 2.3575 -1.1994 3.5720 25 8 3.0529 -2.1542 3.3194 26 6 2.0743 -0.8316 5.0057 27 6 2.7804 -1.8210 5.9350 28 6 2.5885 0.5829 5.2805 29 6 0.5661 -0.8838 5.2572 30 1 -0.3634 -1.0276 0.0183 31 1 -0.3634 0.5296 0.8807 32 1 -0.3633 0.4979 -0.8991 33 1 2.9642 -0.2793 -1.6201 34 1 1.2909 -0.7888 -2.0200 35 1 3.3711 -2.5252 -2.4490 36 1 2.3142 -4.6046 -1.7665 37 1 3.3937 -4.5956 -0.3512 38 1 3.8364 -6.8284 -1.7940 39 1 4.7642 -9.9599 -2.4816 40 1 2.7165 -2.7059 1.3898 41 1 3.9134 -1.5617 0.7093 42 1 3.8550 -1.7841 5.7559 43 1 2.5760 -1.5546 6.9720 44 1 2.4138 -2.8285 5.7391 45 1 2.0852 1.2876 4.6184 46 1 2.3833 0.8491 6.3174 47 1 3.6631 0.6201 5.1013 48 1 0.1997 -1.8916 5.0615 49 1 0.3612 -0.6183 6.2944 50 1 0.0627 -0.1792 4.5952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734410624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:05 Heat of formation + Delta-G solvation = -102.471221 kcal Electronic energy + Delta-G solvation = -30178.526032 eV Core-core repulsion = 26013.005856 eV Total energy + Delta-G solvation = -4165.520177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30558 -39.53309 -38.38121 -37.82386 -36.11628 -34.82317 -33.80453 -32.09367 -31.25303 -30.01682 -27.76258 -27.63947 -26.63651 -26.23711 -25.71455 -24.06220 -22.71750 -21.07793 -20.18536 -19.25454 -18.78711 -17.90769 -17.51448 -16.70682 -16.31581 -16.01207 -15.72448 -15.40978 -15.18587 -14.78342 -14.49916 -14.22028 -14.11994 -13.97188 -13.70362 -13.49665 -13.44885 -13.32996 -12.88744 -12.78204 -12.61950 -12.48328 -12.45406 -12.36162 -12.10091 -11.93271 -11.79921 -11.65433 -11.52658 -11.30845 -11.26871 -11.18212 -11.04520 -10.89141 -10.76892 -10.40200 -10.22831 -9.52256 -9.44284 -8.95514 -8.50966 -8.17515 -7.97700 -6.42772 -3.83723 0.76937 2.32395 2.75217 3.17358 3.26091 3.31664 3.58459 3.88610 4.06167 4.18411 4.29371 4.32139 4.43220 4.51353 4.52608 4.72837 4.95162 5.02322 5.07237 5.14055 5.20869 5.25476 5.28181 5.29923 5.34167 5.46493 5.49945 5.54738 5.55654 5.60181 5.61829 5.69681 5.75064 5.75842 5.82422 5.87637 5.92951 5.93631 5.94244 6.01357 6.09838 6.25194 6.70774 7.09891 7.14705 7.54122 7.54599 7.67759 8.04766 8.59540 9.16536 9.52684 10.03723 10.74922 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.002327 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.300868 B =12031.540103 C =13320.907828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.073 3.927 6 H 0.062 0.938 7 N -0.655 5.655 8 C 0.049 3.951 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.563 5.563 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.102 3.898 21 N -0.587 5.587 22 C 0.491 3.509 23 O -0.512 6.512 24 C 0.357 3.643 25 O -0.406 6.406 26 C -0.093 4.093 27 C -0.137 4.137 28 C -0.143 4.143 29 C -0.143 4.143 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.356 0.644 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 17.201 13.786 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.100 0.900 4 C -0.171 4.171 5 C -0.038 4.038 6 H 0.080 0.920 7 N -0.289 5.289 8 C -0.084 4.084 9 C 0.226 3.774 10 O -0.468 6.468 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.021 4.021 21 N -0.322 5.322 22 C 0.276 3.724 23 O -0.389 6.389 24 C 0.226 3.774 25 O -0.274 6.274 26 C -0.094 4.094 27 C -0.194 4.194 28 C -0.200 4.200 29 C -0.200 4.200 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.294 17.483 13.932 24.611 hybrid contribution -0.489 -1.125 -0.756 1.441 sum -10.783 16.358 13.176 23.611 Atomic orbital electron populations 1.22162 0.94281 1.02549 1.03163 1.21639 0.94910 0.96494 0.83854 0.90042 1.22965 1.02603 0.95174 0.96404 1.22685 0.93259 0.94307 0.93596 0.91969 1.59932 1.46707 1.05190 1.17068 1.21770 0.97409 0.87942 1.01232 1.19752 0.88084 0.83115 0.86425 1.90526 1.44803 1.62317 1.49107 1.41862 1.29491 1.04547 1.44031 1.19701 1.08411 0.89986 1.24786 0.87895 1.25267 0.98444 0.96255 0.97977 1.69615 1.36512 1.05854 1.42299 0.85855 0.80317 0.78292 0.79810 1.20360 1.20939 1.19416 1.22744 0.95469 0.88639 0.95211 1.48657 1.48695 1.30226 1.04664 1.20619 0.82684 0.86123 0.82926 1.90684 1.37457 1.27819 1.82914 1.24915 0.77698 0.82838 0.91987 1.90444 1.27011 1.23864 1.86053 1.20940 0.98813 0.98585 0.91073 1.21797 1.00796 0.98437 0.98411 1.21903 1.01160 0.93785 1.03185 1.21905 0.92071 1.02803 1.03257 0.92407 0.90979 0.91366 0.89073 0.89552 0.82321 0.93636 0.89460 0.77445 0.91852 0.88902 0.89407 0.91837 0.91453 0.91840 0.90223 0.91188 0.92494 0.92524 0.91188 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.06 37.16 0.34 -1.13 16 2 C 0.13 1.32 3.49 -66.95 -0.23 1.09 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.26 5.90 -24.90 -0.15 -1.41 16 5 C 0.07 0.86 3.38 -65.56 -0.22 0.64 16 6 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 7 N -0.66 -9.95 6.04 -105.72 -0.64 -10.59 16 8 C 0.05 0.84 6.03 -4.97 -0.03 0.81 16 9 C 0.44 10.25 7.82 -10.98 -0.09 10.16 16 10 O -0.58 -15.59 15.78 5.55 0.09 -15.51 16 11 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 12 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 13 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 16 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.10 1.27 5.76 -2.53 -0.01 1.26 16 21 N -0.59 -6.77 3.08 -163.67 -0.50 -7.27 16 22 C 0.49 5.82 7.36 -11.76 -0.09 5.74 16 23 O -0.51 -6.42 12.30 5.48 0.07 -6.35 16 24 C 0.36 4.01 6.00 -29.80 -0.18 3.83 16 25 O -0.41 -5.33 13.39 5.98 0.08 -5.25 16 26 C -0.09 -0.81 0.76 -155.66 -0.12 -0.93 16 27 C -0.14 -1.11 7.76 37.16 0.29 -0.82 16 28 C -0.14 -1.12 8.29 37.15 0.31 -0.82 16 29 C -0.14 -1.11 8.29 37.16 0.31 -0.81 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.74 6.77 -51.93 -0.35 0.39 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.69 7.83 -51.93 -0.41 0.28 16 35 H 0.36 5.45 8.14 -39.29 -0.32 5.13 16 36 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.09 1.23 6.16 -51.93 -0.32 0.91 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 45 H 0.08 0.72 6.43 -51.92 -0.33 0.38 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.71 6.43 -51.93 -0.33 0.37 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -31.55 401.67 -7.54 -39.10 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -8.22 Total: 12.19 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.12 Total: 9.64 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.48 Total: -55.87 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: 0.23 Total: -27.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.55 -7.54 -39.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734410624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.376 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds