Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.52356 * 2 1 4 4 C 1.53037 * 109.50278 * 239.91570 * 2 1 3 5 5 C 1.53042 * 109.53985 * 178.68248 * 4 2 1 6 6 C 1.53190 * 109.30903 * 61.36508 * 5 4 2 7 7 N 1.46914 * 108.77950 * 305.36525 * 6 5 4 8 8 C 1.34780 * 120.63334 * 233.58796 * 7 6 5 9 9 O 1.21347 * 120.00065 * 187.08465 * 8 7 6 10 10 C 1.49450 * 119.99809 * 7.08460 * 8 7 6 11 11 O 1.21350 * 119.99907 * 6.39808 * 10 8 7 12 12 N 1.34780 * 120.00158 * 186.40205 * 10 8 7 13 13 C 1.46499 * 120.00118 * 179.97438 * 12 10 8 14 14 C 1.52993 * 109.47156 * 179.97438 * 13 12 10 15 15 O 1.42902 * 110.91824 * 67.44667 * 14 13 12 16 16 C 1.55157 * 111.00591 * 191.34966 * 14 13 12 17 17 C 1.54326 * 102.94520 * 153.57410 * 16 14 13 18 18 N 1.47294 * 107.30491 * 337.82033 * 17 16 14 19 19 C 1.36936 * 125.79425 * 178.92656 * 18 17 16 20 20 H 1.08002 * 120.00353 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99748 * 359.97438 * 19 18 17 22 22 N 1.31623 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47321 * 60.00336 * 23 21 19 25 25 H 1.48504 * 109.47429 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47452 * 300.00237 * 23 21 19 27 27 C 1.47426 * 108.55646 * 358.92355 * 18 17 16 28 28 C 1.46928 * 118.74117 * 53.85886 * 7 6 5 29 29 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47867 * 300.08399 * 1 2 3 31 31 H 1.09001 * 109.47031 * 60.08792 * 1 2 3 32 32 H 1.09010 * 109.45847 * 58.66130 * 4 2 1 33 33 H 1.08995 * 109.45140 * 298.70115 * 4 2 1 34 34 H 1.08998 * 109.49394 * 301.41273 * 5 4 2 35 35 H 1.09003 * 109.52005 * 181.33544 * 5 4 2 36 36 H 1.09000 * 109.58334 * 185.57453 * 6 5 4 37 37 H 1.09002 * 109.69995 * 65.22608 * 6 5 4 38 38 H 0.96992 * 119.99629 * 359.97438 * 12 10 8 39 39 H 1.09007 * 109.47040 * 59.99646 * 13 12 10 40 40 H 1.09000 * 109.47126 * 300.00152 * 13 12 10 41 41 H 0.96696 * 113.99691 * 297.55454 * 15 14 13 42 42 H 1.08993 * 110.72248 * 271.94177 * 16 14 13 43 43 H 1.09007 * 110.71502 * 35.03723 * 16 14 13 44 44 H 1.08994 * 109.88234 * 97.22384 * 17 16 14 45 45 H 1.08995 * 109.88344 * 218.23677 * 17 16 14 46 46 H 0.97006 * 119.99924 * 179.97438 * 22 21 19 47 47 H 1.09007 * 110.36696 * 265.25980 * 27 18 17 48 48 H 1.09002 * 110.36672 * 143.05420 * 27 18 17 49 49 H 1.09003 * 109.58556 * 65.93079 * 28 7 6 50 50 H 1.09003 * 109.58916 * 186.35170 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2482 5 6 3.5709 -0.6950 -1.2658 6 6 4.1052 -1.4266 -0.0305 7 7 3.5045 -0.8290 1.1697 8 6 4.2809 -0.3862 2.1785 9 8 3.7737 -0.0138 3.2161 10 6 5.7666 -0.3539 2.0192 11 8 6.2675 -0.6150 0.9452 12 7 6.5501 -0.0348 3.0684 13 6 8.0064 -0.0037 2.9124 14 6 8.6537 0.3844 4.2432 15 8 8.4658 -0.6414 5.2202 16 6 10.1602 0.7052 4.0563 17 6 10.4533 1.6778 5.2181 18 7 9.1698 2.2770 5.6223 19 6 8.9914 3.1796 6.6364 20 1 8.0041 3.5598 6.8536 21 6 10.0794 3.6053 7.3860 22 7 11.2826 3.1417 7.1217 23 14 9.8360 4.8361 8.7699 24 1 8.9052 4.2693 9.7786 25 1 11.1440 5.1260 9.4105 26 1 9.2653 6.0922 8.2206 27 6 8.1074 1.7419 4.7514 28 6 2.0410 -0.7288 1.2521 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5151 0.8891 31 1 -0.3633 0.5125 -0.8908 32 1 1.6582 -0.2245 -2.1389 33 1 1.6968 -1.7572 -1.2350 34 1 3.9159 0.3389 -1.2540 35 1 3.9340 -1.1893 -2.1669 36 1 5.1895 -1.3245 0.0140 37 1 3.8396 -2.4823 -0.0852 38 1 6.1497 0.1742 3.9268 39 1 8.2747 0.7288 2.1510 40 1 8.3605 -0.9890 2.6093 41 1 7.5396 -0.8083 5.4420 42 1 10.7615 -0.1991 4.1494 43 1 10.3356 1.1859 3.0938 44 1 10.8881 1.1336 6.0564 45 1 11.1399 2.4563 4.8856 46 1 12.0430 3.4394 7.6454 47 1 7.9279 2.4162 3.9139 48 1 7.1898 1.5926 5.3205 49 1 1.6083 -1.7282 1.2986 50 1 1.7628 -0.1661 2.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754758295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -103.544426 kcal Electronic energy + Delta-G solvation = -30499.550937 eV Core-core repulsion = 26333.984222 eV Total energy + Delta-G solvation = -4165.566714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15034 -40.58166 -39.61788 -38.80783 -36.81179 -35.72069 -34.57940 -33.99763 -32.81013 -31.47200 -30.00410 -28.34719 -27.57718 -26.97767 -25.59189 -23.86327 -23.24469 -22.27750 -21.56789 -21.33880 -20.66197 -19.11570 -18.79227 -18.14640 -17.65256 -17.17267 -16.91644 -16.72415 -16.30505 -16.04774 -15.97414 -15.68253 -15.48102 -15.24422 -15.03446 -14.95177 -14.44639 -14.28937 -14.04766 -13.89130 -13.61269 -13.60547 -13.25892 -13.16998 -12.94843 -12.76466 -12.74961 -12.45984 -12.35174 -12.11446 -12.04776 -12.03368 -11.87012 -11.80434 -11.73676 -11.57335 -11.33166 -10.95626 -10.69259 -10.43484 -10.13376 -9.80868 -8.89626 -7.85760 -5.20961 0.23519 1.18640 1.44864 1.48270 1.54441 2.02775 2.36368 2.48417 3.15137 3.15880 3.31899 3.44254 3.63328 3.73987 3.83197 3.90230 3.92159 3.95173 4.10354 4.31865 4.40088 4.46003 4.54665 4.59717 4.61552 4.64591 4.74859 4.77656 4.81465 4.85759 4.88377 4.93921 4.96115 5.06432 5.07284 5.15012 5.18846 5.29272 5.34681 5.42617 5.44439 5.49742 5.64273 5.76453 5.87705 6.13474 6.18441 6.60406 6.77020 6.83243 7.08731 7.75594 8.39581 9.24717 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.002333 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.680056 B =11999.649162 C =12891.522689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.059 0.941 4 C -0.113 4.113 5 C -0.128 4.128 6 C 0.044 3.956 7 N -0.575 5.575 8 C 0.503 3.497 9 O -0.548 6.548 10 C 0.513 3.487 11 O -0.519 6.519 12 N -0.687 5.687 13 C 0.116 3.884 14 C 0.119 3.881 15 O -0.553 6.553 16 C -0.117 4.117 17 C 0.187 3.813 18 N -0.621 5.621 19 C -0.244 4.244 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.950 5.950 23 Si 0.979 3.021 24 H -0.278 1.278 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.109 3.891 28 C 0.108 3.892 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.415 0.585 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.383 0.617 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.008 0.992 45 H 0.011 0.989 46 H 0.247 0.753 47 H 0.035 0.965 48 H 0.047 0.953 49 H 0.089 0.911 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.432 -11.941 -19.494 30.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.077 0.923 4 C -0.151 4.151 5 C -0.166 4.166 6 C -0.076 4.076 7 N -0.307 5.307 8 C 0.286 3.714 9 O -0.426 6.426 10 C 0.295 3.705 11 O -0.398 6.398 12 N -0.339 5.339 13 C -0.008 4.008 14 C 0.077 3.923 15 O -0.359 6.359 16 C -0.155 4.155 17 C 0.063 3.937 18 N -0.347 5.347 19 C -0.373 4.373 20 H 0.099 0.901 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.202 1.202 27 C -0.017 4.017 28 C -0.014 4.014 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.252 0.748 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.231 0.769 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.026 0.974 45 H 0.030 0.970 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.107 0.893 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.563 -11.842 -19.573 29.460 hybrid contribution -0.504 1.066 1.562 1.957 sum -19.067 -10.777 -18.011 28.356 Atomic orbital electron populations 1.21738 0.92807 1.02890 1.02463 1.21557 0.97130 0.99138 0.94440 0.92253 1.21632 0.94820 1.01388 0.97232 1.21838 0.96236 1.00683 0.97824 1.23320 1.04602 0.97039 0.82623 1.48113 1.07319 1.57286 1.18030 1.20090 0.87946 0.79237 0.84171 1.90766 1.75303 1.48653 1.27910 1.20130 0.87898 0.78016 0.84437 1.90334 1.74980 1.48931 1.25515 1.45814 1.07372 1.66960 1.13763 1.22052 0.77559 1.04161 0.97008 1.22448 0.96596 0.86629 0.86659 1.86590 1.31967 1.56098 1.61288 1.22797 0.93119 0.99930 0.99692 1.20908 0.87325 0.92507 0.93008 1.44673 1.03719 1.49752 1.36560 1.19399 0.94193 1.16289 1.07395 0.90055 1.25662 0.95304 1.02613 1.02390 1.70178 0.98753 1.47951 1.43026 0.85148 0.76341 0.78845 0.78964 1.20378 1.22019 1.20235 1.22378 0.92094 0.93513 0.93711 1.22080 0.77597 1.02161 0.99553 0.91348 0.92634 0.91416 0.90580 0.90548 0.93007 0.88931 0.83988 0.90217 0.74827 0.88939 0.88488 0.76864 0.89531 0.88136 0.97407 0.97049 0.94392 0.94722 0.93479 0.89279 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.20 71.98 0.66 -0.61 16 2 C -0.10 -1.29 2.89 -10.57 -0.03 -1.32 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.13 5.16 30.62 0.16 -0.98 16 5 C -0.13 -1.62 6.08 30.67 0.19 -1.43 16 6 C 0.04 0.70 6.27 86.36 0.54 1.24 16 7 N -0.58 -11.15 2.97 -819.66 -2.43 -13.58 16 8 C 0.50 12.25 7.74 87.27 0.68 12.93 16 9 O -0.55 -15.94 15.94 -3.24 -0.05 -15.99 16 10 C 0.51 12.33 7.78 87.27 0.68 13.01 16 11 O -0.52 -13.01 13.10 -3.25 -0.04 -13.05 16 12 N -0.69 -16.00 5.18 -464.41 -2.41 -18.40 16 13 C 0.12 2.79 4.97 86.38 0.43 3.22 16 14 C 0.12 3.75 0.95 -9.40 -0.01 3.74 16 15 O -0.55 -18.07 13.18 -148.98 -1.96 -20.04 16 16 C -0.12 -4.13 6.16 31.78 0.20 -3.94 16 17 C 0.19 9.36 5.38 86.68 0.47 9.83 16 18 N -0.62 -31.98 3.40 -691.29 -2.35 -34.34 16 19 C -0.24 -13.86 10.28 84.03 0.86 -13.00 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 22 N -0.95 -58.24 10.34 21.65 0.22 -58.01 16 23 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 27 C 0.11 4.22 5.73 86.85 0.50 4.72 16 28 C 0.11 1.70 5.72 86.51 0.50 2.20 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.14 2.79 3.78 -78.82 -0.30 2.49 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.41 9.62 6.80 -92.71 -0.63 8.99 16 39 H 0.09 2.18 8.00 -2.38 -0.02 2.16 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.38 9.67 8.58 -74.06 -0.64 9.03 16 42 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 43 H 0.10 3.02 7.93 -2.38 -0.02 3.00 16 44 H 0.01 0.44 7.39 -2.39 -0.02 0.42 16 45 H 0.01 0.63 7.52 -2.39 -0.02 0.61 16 46 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 47 H 0.04 1.32 8.04 -2.38 -0.02 1.30 16 48 H 0.05 1.75 7.80 -2.39 -0.02 1.73 16 49 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.08 1.51 7.05 -2.39 -0.02 1.50 16 Total: -1.00 -72.66 391.52 -1.32 -73.97 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.60 Total: 24.62 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: 6.28 Total: 26.21 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -6.97 Total: -124.33 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -2.06 Total: -49.08 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -72.66 -1.32 -73.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754758295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.571 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds