Wall clock time and date at job start Sat Apr 11 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.50181 * 2 1 4 4 C 1.53042 * 109.49721 * 120.05988 * 2 1 3 5 5 C 1.53032 * 109.53992 * 181.34748 * 4 2 1 6 6 C 1.53191 * 109.31593 * 298.63614 * 5 4 2 7 7 N 1.46926 * 108.77523 * 54.63682 * 6 5 4 8 8 C 1.34769 * 120.63504 * 126.36949 * 7 6 5 9 9 O 1.21352 * 120.00173 * 188.67754 * 8 7 6 10 10 C 1.49453 * 119.99930 * 8.67467 * 8 7 6 11 11 O 1.21345 * 120.00277 * 6.70896 * 10 8 7 12 12 N 1.34775 * 119.99789 * 186.70717 * 10 8 7 13 13 C 1.46506 * 119.99669 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46700 * 180.02562 * 13 12 10 15 15 O 1.42899 * 110.64471 * 298.30765 * 14 13 12 16 16 C 1.55163 * 110.71740 * 174.97887 * 14 13 12 17 17 C 1.55129 * 101.48591 * 205.96789 * 16 14 13 18 18 N 1.47428 * 104.72137 * 37.29505 * 17 16 14 19 19 C 1.36931 * 125.64874 * 155.81963 * 18 17 16 20 20 H 1.08007 * 120.00251 * 5.80088 * 19 18 17 21 21 C 1.38815 * 120.00340 * 185.80090 * 19 18 17 22 22 N 1.31623 * 119.99411 * 7.87272 * 21 19 18 23 23 Si 1.86794 * 120.00293 * 187.87303 * 21 19 18 24 24 H 1.48500 * 109.47019 * 265.01835 * 23 21 19 25 25 H 1.48503 * 109.47362 * 25.01642 * 23 21 19 26 26 H 1.48507 * 109.47154 * 145.01849 * 23 21 19 27 27 C 1.47021 * 108.70236 * 335.54906 * 18 17 16 28 28 C 1.46931 * 118.73675 * 306.64384 * 7 6 5 29 29 H 1.08996 * 109.47354 * 299.94224 * 1 2 3 30 30 H 1.09004 * 109.47199 * 59.93958 * 1 2 3 31 31 H 1.08996 * 109.47480 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.45936 * 61.33187 * 4 2 1 33 33 H 1.08998 * 109.46508 * 301.37224 * 4 2 1 34 34 H 1.09003 * 109.49990 * 178.68406 * 5 4 2 35 35 H 1.09001 * 109.52551 * 58.60499 * 5 4 2 36 36 H 1.08993 * 109.58955 * 294.84945 * 6 5 4 37 37 H 1.09005 * 109.70512 * 174.49225 * 6 5 4 38 38 H 0.97004 * 120.00498 * 0.02562 * 12 10 8 39 39 H 1.08992 * 109.47104 * 60.00416 * 13 12 10 40 40 H 1.08995 * 109.46916 * 299.99892 * 13 12 10 41 41 H 0.96702 * 113.99725 * 61.69114 * 15 14 13 42 42 H 1.09003 * 111.00214 * 324.20237 * 16 14 13 43 43 H 1.08999 * 111.00533 * 88.02213 * 16 14 13 44 44 H 1.08995 * 110.49967 * 278.45389 * 17 16 14 45 45 H 1.08997 * 110.34551 * 156.05457 * 17 16 14 46 46 H 0.97003 * 119.99473 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.87912 * 120.70353 * 27 18 17 48 48 H 1.08998 * 109.88746 * 241.71203 * 27 18 17 49 49 H 1.08990 * 109.58893 * 173.14495 * 28 7 6 50 50 H 1.09001 * 109.58702 * 293.56984 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7226 1.2486 5 6 3.5707 -0.6939 1.2667 6 6 4.1058 -1.4256 0.0318 7 7 3.5053 -0.8284 -1.1688 8 6 4.2819 -0.3847 -2.1770 9 8 3.7900 0.2463 -3.0893 10 6 5.7490 -0.6698 -2.1713 11 8 6.2216 -1.4016 -1.3266 12 7 6.5471 -0.1140 -3.1043 13 6 7.9853 -0.3930 -3.0984 14 6 8.6548 0.3558 -4.2525 15 8 8.1361 -0.0867 -5.5084 16 6 10.1957 0.1823 -4.1989 17 6 10.6765 1.4647 -4.9275 18 7 9.7356 2.5150 -4.4975 19 6 9.9931 3.8598 -4.4828 20 1 10.9186 4.2370 -4.8924 21 6 9.0647 4.7385 -3.9415 22 7 8.0112 4.2726 -3.3047 23 14 9.3105 6.5819 -4.1167 24 1 9.9880 7.1083 -2.9047 25 1 10.1482 6.8582 -5.3114 26 1 7.9908 7.2446 -4.2734 27 6 8.4728 1.8799 -4.0931 28 6 2.0422 -0.7186 -1.2469 29 1 -0.3634 0.5129 0.8905 30 1 -0.3634 0.5148 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6971 -1.7570 1.2356 33 1 1.6576 -0.2242 2.1390 34 1 3.9332 -1.1883 2.1680 35 1 3.9158 0.3399 1.2550 36 1 3.8386 -2.4807 0.0878 37 1 5.1903 -1.3252 -0.0136 38 1 6.1694 0.4713 -3.7794 39 1 8.1481 -1.4642 -3.2169 40 1 8.4156 -0.0624 -2.1531 41 1 7.1886 0.0707 -5.6200 42 1 10.5505 0.1582 -3.1685 43 1 10.5072 -0.7122 -4.7383 44 1 10.6275 1.3308 -6.0081 45 1 11.6918 1.7165 -4.6213 46 1 7.3623 4.8865 -2.9267 47 1 8.2535 2.1202 -3.0527 48 1 7.6615 2.2277 -4.7326 49 1 1.7653 -0.1498 -2.1344 50 1 1.6032 -1.7150 -1.2973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754758297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:34 Heat of formation + Delta-G solvation = -84.240292 kcal Electronic energy + Delta-G solvation = -30933.091268 eV Core-core repulsion = 26768.361643 eV Total energy + Delta-G solvation = -4164.729624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.99559 -39.31566 -38.32041 -37.75362 -35.21921 -34.46342 -33.59559 -32.22347 -32.07039 -29.71430 -28.18747 -27.41669 -26.42030 -25.71275 -24.07652 -22.64126 -22.47242 -20.79932 -20.23847 -19.96088 -19.61772 -17.91302 -17.05577 -16.85469 -16.40003 -16.09952 -15.68595 -15.41698 -15.02944 -14.63119 -14.57238 -14.37932 -14.06035 -13.98686 -13.85449 -13.64609 -13.27066 -13.07880 -12.96998 -12.83210 -12.40967 -12.31053 -12.15602 -12.00633 -11.58398 -11.53015 -11.30934 -11.19678 -11.09597 -10.86693 -10.79328 -10.70530 -10.64059 -10.47657 -10.24053 -10.04588 -9.82246 -9.34780 -9.23750 -9.04396 -8.85161 -8.68855 -6.86934 -5.74609 -3.10133 1.44050 2.29928 3.21782 3.38516 3.44523 3.45958 3.46561 4.29930 4.44931 4.48053 4.53266 4.55043 4.61838 4.82405 4.90244 5.06900 5.16634 5.25963 5.29359 5.34410 5.40563 5.43701 5.47288 5.47893 5.53842 5.57593 5.70991 5.75248 5.84016 5.84576 5.86606 5.89757 5.94227 6.12175 6.13857 6.19806 6.26941 6.39670 6.47476 6.61510 6.87744 6.96674 7.22678 7.26807 7.44776 7.69614 7.73471 8.00298 8.05600 8.20109 9.15559 9.77585 10.42861 11.35183 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.003006 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.155806 B = 9311.459005 C =10659.721125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.069 3.931 7 N -0.584 5.584 8 C 0.510 3.490 9 O -0.517 6.517 10 C 0.510 3.490 11 O -0.520 6.520 12 N -0.684 5.684 13 C 0.106 3.894 14 C 0.086 3.914 15 O -0.551 6.551 16 C -0.113 4.113 17 C 0.136 3.864 18 N -0.602 5.602 19 C -0.227 4.227 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.154 3.846 28 C 0.113 3.887 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.142 0.858 38 H 0.414 0.586 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.370 0.630 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.026 0.974 45 H 0.042 0.958 46 H 0.252 0.748 47 H 0.074 0.926 48 H 0.033 0.967 49 H 0.094 0.906 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 -13.816 7.663 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.175 4.175 6 C -0.052 4.052 7 N -0.318 5.318 8 C 0.292 3.708 9 O -0.392 6.392 10 C 0.292 3.708 11 O -0.399 6.399 12 N -0.336 5.336 13 C -0.017 4.017 14 C 0.044 3.956 15 O -0.356 6.356 16 C -0.152 4.152 17 C 0.010 3.990 18 N -0.328 5.328 19 C -0.355 4.355 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.206 1.206 26 H -0.216 1.216 27 C 0.028 3.972 28 C -0.009 4.009 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.159 0.841 38 H 0.251 0.749 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.217 0.783 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.051 0.949 49 H 0.113 0.887 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.936 -13.963 7.716 19.341 hybrid contribution -0.884 1.467 -0.159 1.720 sum -11.819 -12.496 7.557 18.787 Atomic orbital electron populations 1.21756 0.94233 1.01987 1.02219 1.21436 0.96026 1.00477 0.94837 0.90502 1.21617 0.95642 1.00626 0.97440 1.21963 0.95684 1.01742 0.98158 1.22870 1.03597 0.96375 0.82371 1.47896 1.06558 1.59341 1.17995 1.20136 0.87715 0.79963 0.82972 1.90774 1.74891 1.37632 1.35934 1.20005 0.87380 0.81264 0.82195 1.90463 1.75874 1.37402 1.36125 1.45761 1.08651 1.47850 1.31313 1.22169 0.78417 1.00586 1.00560 1.22920 0.94619 0.96387 0.81636 1.86505 1.27892 1.84839 1.36410 1.22746 0.91548 0.99429 1.01482 1.21622 0.93852 0.87331 0.96220 1.44354 1.09903 1.01792 1.76769 1.19069 1.03151 0.80365 1.32962 0.90321 1.24796 0.97568 0.98223 0.99923 1.69893 1.13576 1.32878 1.40535 0.86097 0.76943 0.85021 0.77692 1.21649 1.20642 1.21638 1.21907 0.89320 0.84600 1.01328 1.21698 0.78698 1.01017 0.99516 0.92235 0.92270 0.92507 0.91793 0.91681 0.90486 0.91433 0.91528 0.84098 0.74880 0.90524 0.89684 0.78330 0.90070 0.90875 0.95643 0.93927 0.93738 0.90791 0.94946 0.88741 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.15 0.34 -0.65 16 2 C -0.11 -0.95 2.85 -90.72 -0.26 -1.21 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.12 -0.90 5.17 -26.69 -0.14 -1.04 16 5 C -0.14 -1.24 6.08 -26.62 -0.16 -1.40 16 6 C 0.07 0.74 5.99 -3.71 -0.02 0.72 16 7 N -0.58 -7.18 2.98 -173.54 -0.52 -7.70 16 8 C 0.51 7.61 7.73 -11.59 -0.09 7.52 16 9 O -0.52 -8.80 15.93 5.49 0.09 -8.72 16 10 C 0.51 7.81 7.74 -11.58 -0.09 7.72 16 11 O -0.52 -8.20 13.18 5.50 0.07 -8.13 16 12 N -0.68 -10.50 5.17 -60.73 -0.31 -10.81 16 13 C 0.11 1.65 4.73 -4.04 -0.02 1.63 16 14 C 0.09 1.52 0.91 -88.78 -0.08 1.44 16 15 O -0.55 -9.46 13.10 -35.23 -0.46 -9.92 16 16 C -0.11 -1.94 6.27 -24.46 -0.15 -2.10 16 17 C 0.14 2.81 7.24 -2.41 -0.02 2.79 16 18 N -0.60 -15.15 3.39 -169.93 -0.58 -15.72 16 19 C -0.23 -6.28 10.26 -15.06 -0.15 -6.44 16 20 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 21 C -0.01 -0.25 5.45 -17.43 -0.09 -0.34 16 22 N -0.92 -26.50 10.47 55.49 0.58 -25.92 16 23 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.15 3.53 4.24 -3.07 -0.01 3.51 16 28 C 0.11 1.15 5.70 -3.93 -0.02 1.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.14 1.80 4.31 -54.80 -0.24 1.56 16 38 H 0.41 6.45 6.87 -40.82 -0.28 6.17 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.39 8.13 -51.93 -0.42 0.96 16 41 H 0.37 5.35 8.12 45.56 0.37 5.72 16 42 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.07 1.89 6.54 -51.92 -0.34 1.55 16 48 H 0.03 0.82 7.91 -51.93 -0.41 0.41 16 49 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -31.91 391.72 -8.79 -40.70 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.57 Total: 9.99 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: -0.97 Total: 13.31 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.83 Total: -60.16 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.30 Total: -26.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.91 -8.79 -40.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754758297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.544 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds