Wall clock time and date at job start Sat Apr 11 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.46968 * 2 1 4 4 O 1.21283 * 120.00259 * 359.97438 * 3 2 1 5 5 N 1.34783 * 120.00106 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00077 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.46804 * 324.99967 * 6 5 3 8 8 C 1.53001 * 109.47067 * 84.99906 * 6 5 3 9 9 C 1.50701 * 109.46815 * 204.99907 * 6 5 3 10 10 O 1.21272 * 120.00283 * 0.02562 * 9 6 5 11 11 N 1.34774 * 119.99670 * 179.97438 * 9 6 5 12 12 C 1.46498 * 120.00299 * 179.97438 * 11 9 6 13 13 C 1.53001 * 109.47453 * 180.02562 * 12 11 9 14 14 H 1.08992 * 110.52117 * 307.79644 * 13 12 11 15 15 C 1.55059 * 110.58161 * 184.99868 * 13 12 11 16 16 C 1.55030 * 102.12935 * 204.78112 * 15 13 12 17 17 C 1.53322 * 103.78366 * 20.86698 * 16 15 13 18 18 C 1.52652 * 115.56243 * 133.64213 * 17 16 15 19 19 N 1.47222 * 87.77949 * 90.04529 * 18 17 16 20 20 C 1.36932 * 135.96431 * 206.41651 * 19 18 17 21 21 H 1.08004 * 120.00066 * 6.79093 * 20 19 18 22 22 C 1.38808 * 119.99884 * 186.79269 * 20 19 18 23 23 N 1.31629 * 119.99858 * 172.34298 * 22 20 19 24 24 Si 1.86797 * 120.00274 * 352.34104 * 22 20 19 25 25 H 1.48502 * 109.47471 * 175.35206 * 24 22 20 26 26 H 1.48504 * 109.47042 * 55.35242 * 24 22 20 27 27 H 1.48501 * 109.47081 * 295.35483 * 24 22 20 28 28 C 1.47219 * 88.06699 * 26.66772 * 19 18 17 29 29 O 1.42842 * 108.32807 * 1.60437 * 17 16 15 30 30 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47473 * 300.00149 * 1 2 3 32 32 H 1.08999 * 109.47128 * 60.00193 * 1 2 3 33 33 H 1.08996 * 109.47159 * 239.99589 * 2 1 3 34 34 H 1.09003 * 109.47265 * 119.99325 * 2 1 3 35 35 H 0.96992 * 119.99678 * 359.97438 * 5 3 2 36 36 H 1.08995 * 109.47088 * 59.99595 * 8 6 5 37 37 H 1.09001 * 109.47118 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.46753 * 300.00166 * 8 6 5 39 39 H 0.97010 * 120.00048 * 0.02562 * 11 9 6 40 40 H 1.09008 * 109.46834 * 60.00005 * 12 11 9 41 41 H 1.09004 * 109.46721 * 300.00651 * 12 11 9 42 42 H 1.09008 * 110.87007 * 86.62571 * 15 13 12 43 43 H 1.08998 * 111.05506 * 323.02742 * 15 13 12 44 44 H 1.08993 * 110.56812 * 262.29252 * 16 15 13 45 45 H 1.08997 * 110.68568 * 139.49791 * 16 15 13 46 46 H 1.09002 * 113.50148 * 335.31600 * 18 17 16 47 47 H 1.09005 * 113.56183 * 204.78256 * 18 17 16 48 48 H 0.96991 * 120.00047 * 4.89162 * 23 22 20 49 49 H 1.09004 * 113.49685 * 88.06070 * 28 19 18 50 50 H 1.08993 * 113.49991 * 218.60291 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 -0.0011 7 1 3.1729 3.6713 -0.5905 8 6 3.8976 3.5716 1.4358 9 6 5.2270 3.0926 -0.6020 10 8 5.7516 2.0711 -0.9919 11 7 5.8788 4.2675 -0.7071 12 6 7.2218 4.3105 -1.2908 13 6 7.7317 5.7530 -1.2915 14 1 7.0032 6.4156 -1.7585 15 6 9.0987 5.8476 -2.0172 16 6 9.7197 7.1163 -1.3782 17 6 8.9526 7.2743 -0.0602 18 6 9.8099 7.5541 1.1715 19 7 9.6556 8.9893 0.8822 20 6 10.3767 10.1266 1.1304 21 1 11.3610 10.0569 1.5694 22 6 9.8425 11.3691 0.8178 23 7 10.4659 12.4664 1.1917 24 14 8.2390 11.4839 -0.1334 25 1 7.8277 12.9068 -0.2405 26 1 7.1854 10.7163 0.5779 27 1 8.4290 10.9198 -1.4939 28 6 8.3835 8.6671 0.2149 29 8 8.0283 6.1913 0.0542 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.9877 0.9299 -0.0005 36 1 4.5703 2.9486 2.0252 37 1 4.2613 4.5991 1.4354 38 1 2.8985 3.5395 1.8704 39 1 5.4590 5.0847 -0.3956 40 1 7.1853 3.9371 -2.3143 41 1 7.8945 3.6879 -0.7007 42 1 8.9604 5.9813 -3.0902 43 1 9.7121 4.9700 -1.8130 44 1 9.5625 7.9839 -2.0190 45 1 10.7828 6.9703 -1.1873 46 1 10.8362 7.1993 1.0764 47 1 9.3423 7.2464 2.1069 48 1 11.3329 12.4088 1.6227 49 1 7.5278 8.6615 0.8900 50 1 8.2059 9.2519 -0.6876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755054301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:58 Heat of formation + Delta-G solvation = -61.575080 kcal Electronic energy + Delta-G solvation = -29740.013390 eV Core-core repulsion = 25576.266603 eV Total energy + Delta-G solvation = -4163.746787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78969 -40.26985 -39.43347 -37.09261 -35.40349 -34.89319 -33.28024 -32.39514 -32.13894 -31.11141 -29.34616 -27.19597 -25.61533 -25.58151 -24.42885 -23.19612 -21.62129 -21.35463 -20.69379 -20.49299 -19.21389 -18.24532 -17.52917 -17.20274 -16.77378 -16.45036 -16.04538 -15.80862 -15.55934 -15.48665 -14.75156 -14.67519 -14.29332 -14.06993 -13.86192 -13.77239 -13.27110 -13.22493 -13.11605 -12.91601 -12.76473 -12.57228 -12.37265 -12.14480 -12.12571 -11.99238 -11.64926 -11.56331 -11.49861 -11.30791 -11.13715 -10.74852 -10.48290 -10.39122 -10.27619 -10.17313 -9.91513 -9.54328 -9.39694 -9.26778 -8.92222 -8.87559 -7.21656 -6.38061 -3.29183 2.19837 2.27021 2.48256 3.05920 3.34347 3.39146 3.59959 3.72432 4.21453 4.37712 4.49900 4.53819 4.61461 4.62824 4.66527 4.71247 4.75544 4.78901 4.82065 4.90209 5.05233 5.11041 5.24740 5.30618 5.34100 5.37788 5.40635 5.43644 5.50263 5.53255 5.71879 5.77417 5.81272 5.81990 5.98074 6.05597 6.09689 6.16113 6.16749 6.24984 6.26485 6.31706 6.49211 7.01126 7.09872 7.11912 7.23329 7.78748 7.85148 8.17777 8.91543 9.43448 10.28749 11.14802 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.002118 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.500680 B =13216.968157 C =13964.248982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.541 6.541 5 N -0.715 5.715 6 C 0.124 3.876 7 H 0.115 0.885 8 C -0.160 4.160 9 C 0.513 3.487 10 O -0.542 6.542 11 N -0.716 5.716 12 C 0.129 3.871 13 C 0.060 3.940 14 H 0.077 0.923 15 C -0.145 4.145 16 C -0.114 4.114 17 C 0.060 3.940 18 C 0.133 3.867 19 N -0.619 5.619 20 C -0.303 4.303 21 H 0.084 0.916 22 C -0.024 4.024 23 N -0.932 5.932 24 Si 1.070 2.930 25 H -0.294 1.294 26 H -0.286 1.286 27 H -0.294 1.294 28 C 0.090 3.910 29 O -0.355 6.355 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.410 0.590 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.408 0.592 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.261 0.739 49 H 0.052 0.948 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.063 -25.137 -5.751 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.417 6.417 5 N -0.370 5.370 6 C 0.016 3.984 7 H 0.132 0.868 8 C -0.219 4.219 9 C 0.298 3.702 10 O -0.419 6.419 11 N -0.368 5.368 12 C 0.006 3.994 13 C 0.002 3.998 14 H 0.095 0.905 15 C -0.183 4.183 16 C -0.151 4.151 17 C 0.020 3.980 18 C 0.007 3.993 19 N -0.350 5.350 20 C -0.429 4.429 21 H 0.102 0.898 22 C -0.223 4.223 23 N -0.574 5.574 24 Si 0.903 3.097 25 H -0.221 1.221 26 H -0.213 1.213 27 H -0.223 1.223 28 C -0.036 4.036 29 O -0.273 6.273 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.285 -23.991 -6.373 29.152 hybrid contribution 1.480 -0.836 0.682 1.831 sum -13.805 -24.827 -5.691 28.971 Atomic orbital electron populations 1.21535 0.92836 1.01687 1.03437 1.21625 0.98719 0.93367 1.04611 1.20849 0.81612 0.92161 0.75249 1.90715 1.55225 1.46497 1.49289 1.45829 1.07600 1.07852 1.75670 1.20756 0.93226 0.85713 0.98729 0.86750 1.22145 1.03761 1.01921 0.94071 1.20547 0.87354 0.83731 0.78607 1.90692 1.68509 1.33450 1.49268 1.45886 1.18037 1.09904 1.62986 1.21477 0.82821 0.95825 0.99321 1.23371 0.97173 0.94150 0.85089 0.90499 1.23138 0.95537 0.99334 1.00336 1.22388 1.00574 0.97382 0.94799 1.23707 0.90611 0.86767 0.96964 1.22362 0.96898 0.85700 0.94359 1.45702 1.20442 1.02672 1.66144 1.20088 0.99519 0.82450 1.40856 0.89790 1.25740 1.05554 0.90445 1.00515 1.70924 1.16350 1.27644 1.42471 0.83696 0.75652 0.74725 0.75634 1.22141 1.21263 1.22272 1.23196 0.91612 0.92171 0.96626 1.88768 1.63414 1.50536 1.24605 0.91990 0.91918 0.91937 0.88714 0.88746 0.75314 0.91630 0.90524 0.90708 0.75659 0.89957 0.90236 0.90048 0.90186 0.90108 0.89884 0.93179 0.93667 0.92847 0.93081 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.20 37.16 0.34 -0.49 16 2 C -0.14 -0.79 6.42 -27.89 -0.18 -0.97 16 3 C 0.51 4.60 7.79 -10.98 -0.09 4.51 16 4 O -0.54 -6.74 15.64 5.55 0.09 -6.66 16 5 N -0.72 -5.90 4.95 -54.93 -0.27 -6.18 16 6 C 0.12 1.08 2.98 -69.08 -0.21 0.88 16 7 H 0.11 1.03 7.58 -51.93 -0.39 0.63 16 8 C -0.16 -1.27 9.38 37.16 0.35 -0.92 16 9 C 0.51 5.18 7.22 -10.99 -0.08 5.10 16 10 O -0.54 -6.94 15.84 5.56 0.09 -6.85 16 11 N -0.72 -6.63 5.45 -60.29 -0.33 -6.96 16 12 C 0.13 1.27 5.42 -4.04 -0.02 1.24 16 13 C 0.06 0.67 3.38 -25.64 -0.09 0.58 16 14 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.15 -1.55 6.60 -24.57 -0.16 -1.71 16 16 C -0.11 -1.66 6.46 -25.49 -0.16 -1.82 16 17 C 0.06 1.03 1.66 -90.66 -0.15 0.88 16 18 C 0.13 2.64 8.20 -8.03 -0.07 2.57 16 19 N -0.62 -15.00 3.66 -184.61 -0.68 -15.68 16 20 C -0.30 -8.62 11.08 -15.06 -0.17 -8.78 16 21 H 0.08 2.51 8.05 -52.48 -0.42 2.08 16 22 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 23 N -0.93 -29.11 13.70 55.49 0.76 -28.35 16 24 Si 1.07 26.41 25.13 -169.99 -4.27 22.14 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -6.61 6.11 56.52 0.35 -6.26 16 27 H -0.29 -6.78 6.63 56.52 0.37 -6.40 16 28 C 0.09 1.87 5.22 -7.88 -0.04 1.83 16 29 O -0.36 -5.23 11.03 -35.23 -0.39 -5.62 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.06 0.45 8.10 -51.93 -0.42 0.02 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.41 3.00 7.79 -40.82 -0.32 2.68 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.55 7.56 -51.93 -0.39 0.15 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.41 3.27 7.89 -40.82 -0.32 2.95 16 40 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 44 H 0.08 1.25 7.82 -51.93 -0.41 0.84 16 45 H 0.08 1.21 7.81 -51.93 -0.41 0.81 16 46 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 49 H 0.05 1.08 7.69 -51.93 -0.40 0.68 16 50 H 0.05 1.09 4.50 -51.93 -0.23 0.85 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -35.19 400.78 -8.20 -43.39 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.43 Total: 2.62 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.82 Total: 2.11 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.52 Total: -57.17 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.21 Total: -19.13 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -4.27 Total: 22.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.19 -8.20 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.184 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds