Wall clock time and date at job start Sat Apr 11 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46655 * 2 1 4 4 O 1.21274 * 120.00034 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99541 * 179.97438 * 3 2 1 6 6 C 1.46506 * 119.99693 * 179.97438 * 5 3 2 7 7 H 1.08996 * 109.46660 * 35.00912 * 6 5 3 8 8 C 1.52997 * 109.47289 * 275.00198 * 6 5 3 9 9 C 1.50699 * 109.46928 * 155.00268 * 6 5 3 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 6 5 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 6 5 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 6 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 H 1.09007 * 110.26278 * 60.62355 * 13 12 11 15 15 C 1.55002 * 110.30246 * 182.79556 * 13 12 11 16 16 C 1.55456 * 101.02598 * 155.01796 * 15 13 12 17 17 C 1.53768 * 102.01470 * 326.40796 * 16 15 13 18 18 C 1.53278 * 114.72993 * 151.73974 * 17 16 15 19 19 N 1.47711 * 85.91302 * 92.61500 * 18 17 16 20 20 C 1.36930 * 134.43612 * 204.18593 * 19 18 17 21 21 H 1.08006 * 120.00077 * 179.97438 * 20 19 18 22 22 C 1.38817 * 120.00213 * 359.95844 * 20 19 18 23 23 N 1.31613 * 119.99926 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00116 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46741 * 60.00035 * 24 22 20 26 26 H 1.48498 * 109.47231 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47207 * 300.00278 * 24 22 20 28 28 C 1.47705 * 91.12580 * 24.15917 * 19 18 17 29 29 O 1.42525 * 108.38350 * 20.95769 * 17 16 15 30 30 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47105 * 299.99335 * 1 2 3 32 32 H 1.08999 * 109.47446 * 60.00274 * 1 2 3 33 33 H 1.09002 * 109.47150 * 240.00855 * 2 1 3 34 34 H 1.08999 * 109.47446 * 119.99726 * 2 1 3 35 35 H 0.97000 * 120.00190 * 0.02562 * 5 3 2 36 36 H 1.09002 * 109.47153 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.46832 * 60.00146 * 8 6 5 38 38 H 1.09004 * 109.47261 * 300.00128 * 8 6 5 39 39 H 0.96996 * 119.99844 * 359.97438 * 11 9 6 40 40 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 41 41 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 42 42 H 1.09003 * 111.10592 * 272.95091 * 15 13 12 43 43 H 1.08993 * 111.11128 * 37.07905 * 15 13 12 44 44 H 1.09004 * 110.91909 * 208.23321 * 16 15 13 45 45 H 1.08994 * 110.95806 * 84.60447 * 16 15 13 46 46 H 1.08995 * 113.79739 * 206.86770 * 18 17 16 47 47 H 1.08997 * 113.79805 * 338.36508 * 18 17 16 48 48 H 0.96998 * 120.00397 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.80389 * 221.59981 * 28 19 18 50 50 H 1.08998 * 113.80657 * 90.08964 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8456 3.0485 0.0000 7 1 3.1727 3.6718 0.5888 8 6 3.8977 3.5704 -1.4373 9 6 5.2268 3.0932 0.6010 10 8 5.7518 2.0718 0.9910 11 7 5.8786 4.2683 0.7052 12 6 7.2216 4.3117 1.2890 13 6 7.7315 5.7542 1.2886 14 1 7.0736 6.3874 1.8840 15 6 9.1797 5.8129 1.8381 16 6 9.7006 7.1138 1.1651 17 6 8.9625 7.0940 -0.1838 18 6 8.7016 8.4764 -0.7923 19 7 9.9795 8.2858 -1.5082 20 6 10.9079 9.1313 -2.0541 21 1 11.7857 8.7294 -2.5383 22 6 10.7208 10.5051 -1.9856 23 7 9.6507 10.9949 -1.3964 24 14 11.9877 11.6586 -2.7298 25 1 12.1118 11.3854 -4.1842 26 1 11.5570 13.0650 -2.5258 27 1 13.3012 11.4422 -2.0717 28 6 9.8553 6.8180 -1.3987 29 8 7.8192 6.2523 -0.0582 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.9877 0.9299 0.0005 36 1 4.2606 4.5983 -1.4376 37 1 2.8987 3.5380 -1.8720 38 1 4.5706 2.9470 -2.0261 39 1 5.4589 5.0851 0.3930 40 1 7.1849 3.9392 2.3128 41 1 7.8943 3.6887 0.6996 42 1 9.1840 5.9041 2.9243 43 1 9.7570 4.9462 1.5163 44 1 10.7799 7.0710 1.0188 45 1 9.4232 7.9922 1.7477 46 1 7.8312 8.5114 -1.4474 47 1 8.7216 9.2880 -0.0650 48 1 9.5197 11.9548 -1.3488 49 1 10.7902 6.3146 -1.1522 50 1 9.3298 6.3574 -2.2352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755054302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:01 Heat of formation + Delta-G solvation = -70.594829 kcal Electronic energy + Delta-G solvation = -29640.264338 eV Core-core repulsion = 25476.126425 eV Total energy + Delta-G solvation = -4164.137913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67901 -39.94254 -39.28811 -36.67102 -35.30684 -34.69361 -33.22402 -32.12526 -31.96730 -30.97531 -29.06519 -26.99030 -25.53452 -24.96261 -24.36969 -23.17306 -21.85437 -21.29453 -20.61763 -20.37206 -18.79529 -18.16121 -17.09835 -16.91412 -16.56744 -16.37897 -15.98236 -15.49791 -15.30575 -15.12900 -14.64826 -14.39058 -14.04748 -13.93859 -13.76441 -13.68258 -13.21005 -13.01250 -12.85105 -12.68394 -12.52631 -12.43947 -12.17245 -12.09485 -11.90553 -11.79658 -11.51590 -11.44985 -11.23913 -10.98751 -10.88614 -10.70815 -10.54939 -10.38899 -10.20053 -10.09149 -10.04897 -9.60047 -9.46203 -9.25761 -8.84004 -8.76621 -6.93672 -5.81287 -3.13791 2.28800 2.35659 2.57615 3.15894 3.36991 3.41105 3.42503 3.92817 4.31860 4.43721 4.47933 4.67560 4.69960 4.71923 4.77474 4.78834 4.84788 5.03850 5.13328 5.16652 5.23302 5.28692 5.35167 5.43697 5.44830 5.49975 5.50949 5.57781 5.61174 5.65993 5.85982 5.87417 5.87848 6.00894 6.05598 6.19458 6.31442 6.35066 6.45925 6.55853 6.69090 6.98942 7.17603 7.19206 7.25248 7.47912 7.65688 7.89378 7.92765 7.93729 9.00074 9.65953 10.54437 11.36046 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.001936 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.432427 B =14457.857005 C =15164.570579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.541 6.541 5 N -0.715 5.715 6 C 0.125 3.875 7 H 0.114 0.886 8 C -0.160 4.160 9 C 0.511 3.489 10 O -0.544 6.544 11 N -0.712 5.712 12 C 0.124 3.876 13 C 0.066 3.934 14 H 0.075 0.925 15 C -0.148 4.148 16 C -0.112 4.112 17 C 0.056 3.944 18 C 0.165 3.835 19 N -0.604 5.604 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.118 3.882 29 O -0.365 6.365 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.410 0.590 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.409 0.591 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.032 0.968 47 H 0.076 0.924 48 H 0.255 0.745 49 H 0.045 0.955 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 -19.916 6.899 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.418 6.418 5 N -0.369 5.369 6 C 0.016 3.984 7 H 0.132 0.868 8 C -0.219 4.219 9 C 0.296 3.704 10 O -0.422 6.422 11 N -0.364 5.364 12 C 0.001 3.999 13 C 0.007 3.993 14 H 0.093 0.907 15 C -0.186 4.186 16 C -0.150 4.150 17 C 0.016 3.984 18 C 0.039 3.961 19 N -0.332 5.332 20 C -0.349 4.349 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.744 3.256 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.008 4.008 29 O -0.283 6.283 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.247 0.753 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.245 0.755 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.605 -19.701 6.945 24.398 hybrid contribution 0.988 0.840 -0.560 1.412 sum -11.617 -18.861 6.385 23.054 Atomic orbital electron populations 1.21532 0.92873 1.01643 1.03423 1.21627 0.98686 0.93426 1.04589 1.20835 0.81643 0.92130 0.75291 1.90710 1.55224 1.46502 1.49347 1.45831 1.07568 1.07916 1.75581 1.20756 0.93300 0.85600 0.98745 0.86806 1.22144 1.03671 1.02048 0.94028 1.20545 0.87352 0.83802 0.78663 1.90687 1.68555 1.33507 1.49475 1.45834 1.18003 1.09866 1.62682 1.21622 0.82877 0.96483 0.98953 1.23176 0.97077 0.93081 0.85938 0.90688 1.23262 0.94907 0.99517 1.00911 1.22615 1.01410 0.96641 0.94344 1.24315 0.85577 0.93184 0.95294 1.22508 0.88477 0.91499 0.93577 1.45634 1.21198 0.99411 1.66995 1.18922 0.98949 0.86664 1.30403 0.90181 1.24789 0.97936 0.96504 1.01105 1.69801 1.27385 1.11872 1.47695 0.86182 0.80506 0.80033 0.78929 1.21148 1.21519 1.21043 1.22807 0.95793 0.87964 0.94251 1.88342 1.47248 1.65644 1.27089 0.92030 0.91952 0.91924 0.88763 0.88741 0.75331 0.90406 0.90794 0.91651 0.75517 0.90377 0.90624 0.90125 0.90334 0.89711 0.90317 0.94973 0.90617 0.93511 0.93692 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.14 -0.86 6.42 -27.88 -0.18 -1.04 16 3 C 0.51 4.88 7.79 -10.98 -0.09 4.80 16 4 O -0.54 -7.04 15.64 5.56 0.09 -6.95 16 5 N -0.71 -6.39 4.95 -54.93 -0.27 -6.66 16 6 C 0.12 1.19 2.99 -69.08 -0.21 0.98 16 7 H 0.11 1.11 7.58 -51.93 -0.39 0.72 16 8 C -0.16 -1.42 9.38 37.16 0.35 -1.07 16 9 C 0.51 5.66 7.22 -10.99 -0.08 5.58 16 10 O -0.54 -7.46 15.84 5.56 0.09 -7.37 16 11 N -0.71 -7.41 5.37 -60.29 -0.32 -7.74 16 12 C 0.12 1.36 5.40 -4.04 -0.02 1.34 16 13 C 0.07 0.79 3.52 -25.68 -0.09 0.70 16 14 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 15 C -0.15 -1.73 6.58 -24.37 -0.16 -1.89 16 16 C -0.11 -1.77 6.32 -25.03 -0.16 -1.93 16 17 C 0.06 1.04 1.68 -90.05 -0.15 0.89 16 18 C 0.16 3.86 7.01 -3.24 -0.02 3.84 16 19 N -0.60 -15.30 3.67 -181.27 -0.67 -15.97 16 20 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 21 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 23 N -0.92 -26.86 11.39 55.49 0.63 -26.23 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.12 2.44 8.37 -3.24 -0.03 2.42 16 29 O -0.36 -5.85 10.67 -35.23 -0.38 -6.23 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.41 3.29 7.79 -40.82 -0.32 2.97 16 36 H 0.08 0.64 7.57 -51.93 -0.39 0.25 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.41 3.84 7.83 -40.82 -0.32 3.52 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 44 H 0.08 1.40 7.83 -51.93 -0.41 0.99 16 45 H 0.08 1.26 8.01 -51.93 -0.42 0.85 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 1.92 7.05 -51.93 -0.37 1.55 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 49 H 0.04 0.87 7.98 -51.93 -0.41 0.46 16 50 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 408.09 15.07 6.15 6.15 Total: -1.00 -33.79 408.09 -8.94 -42.73 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.48 Total: 3.97 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.75 Total: 7.49 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.63 Total: -56.60 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.20 Total: -20.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.79 -8.94 -42.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.867 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds