Wall clock time and date at job start Sat Apr 11 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46655 * 2 1 4 4 O 1.21274 * 120.00034 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99541 * 179.97438 * 3 2 1 6 6 C 1.46506 * 119.99693 * 179.97438 * 5 3 2 7 7 H 1.08996 * 109.46660 * 35.00912 * 6 5 3 8 8 C 1.52997 * 109.47289 * 275.00198 * 6 5 3 9 9 C 1.50699 * 109.46928 * 155.00268 * 6 5 3 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 6 5 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 6 5 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 6 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 H 1.09007 * 110.26278 * 60.62355 * 13 12 11 15 15 C 1.55002 * 110.30246 * 182.79556 * 13 12 11 16 16 C 1.55456 * 101.02598 * 155.01796 * 15 13 12 17 17 C 1.53768 * 102.01470 * 326.40796 * 16 15 13 18 18 C 1.53278 * 114.72993 * 151.73974 * 17 16 15 19 19 N 1.47711 * 85.91302 * 92.61500 * 18 17 16 20 20 C 1.36930 * 134.43612 * 204.18593 * 19 18 17 21 21 H 1.08006 * 120.00077 * 179.97438 * 20 19 18 22 22 C 1.38817 * 120.00213 * 359.95844 * 20 19 18 23 23 N 1.31613 * 119.99926 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00116 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46741 * 60.00035 * 24 22 20 26 26 H 1.48498 * 109.47231 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47207 * 300.00278 * 24 22 20 28 28 C 1.47705 * 91.12580 * 24.15917 * 19 18 17 29 29 O 1.42525 * 108.38350 * 20.95769 * 17 16 15 30 30 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47105 * 299.99335 * 1 2 3 32 32 H 1.08999 * 109.47446 * 60.00274 * 1 2 3 33 33 H 1.09002 * 109.47150 * 240.00855 * 2 1 3 34 34 H 1.08999 * 109.47446 * 119.99726 * 2 1 3 35 35 H 0.97000 * 120.00190 * 0.02562 * 5 3 2 36 36 H 1.09002 * 109.47153 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.46832 * 60.00146 * 8 6 5 38 38 H 1.09004 * 109.47261 * 300.00128 * 8 6 5 39 39 H 0.96996 * 119.99844 * 359.97438 * 11 9 6 40 40 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 41 41 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 42 42 H 1.09003 * 111.10592 * 272.95091 * 15 13 12 43 43 H 1.08993 * 111.11128 * 37.07905 * 15 13 12 44 44 H 1.09004 * 110.91909 * 208.23321 * 16 15 13 45 45 H 1.08994 * 110.95806 * 84.60447 * 16 15 13 46 46 H 1.08995 * 113.79739 * 206.86770 * 18 17 16 47 47 H 1.08997 * 113.79805 * 338.36508 * 18 17 16 48 48 H 0.96998 * 120.00397 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.80389 * 221.59981 * 28 19 18 50 50 H 1.08998 * 113.80657 * 90.08964 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8456 3.0485 0.0000 7 1 3.1727 3.6718 0.5888 8 6 3.8977 3.5704 -1.4373 9 6 5.2268 3.0932 0.6010 10 8 5.7518 2.0718 0.9910 11 7 5.8786 4.2683 0.7052 12 6 7.2216 4.3117 1.2890 13 6 7.7315 5.7542 1.2886 14 1 7.0736 6.3874 1.8840 15 6 9.1797 5.8129 1.8381 16 6 9.7006 7.1138 1.1651 17 6 8.9625 7.0940 -0.1838 18 6 8.7016 8.4764 -0.7923 19 7 9.9795 8.2858 -1.5082 20 6 10.9079 9.1313 -2.0541 21 1 11.7857 8.7294 -2.5383 22 6 10.7208 10.5051 -1.9856 23 7 9.6507 10.9949 -1.3964 24 14 11.9877 11.6586 -2.7298 25 1 12.1118 11.3854 -4.1842 26 1 11.5570 13.0650 -2.5258 27 1 13.3012 11.4422 -2.0717 28 6 9.8553 6.8180 -1.3987 29 8 7.8192 6.2523 -0.0582 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.9877 0.9299 0.0005 36 1 4.2606 4.5983 -1.4376 37 1 2.8987 3.5380 -1.8720 38 1 4.5706 2.9470 -2.0261 39 1 5.4589 5.0851 0.3930 40 1 7.1849 3.9392 2.3128 41 1 7.8943 3.6887 0.6996 42 1 9.1840 5.9041 2.9243 43 1 9.7570 4.9462 1.5163 44 1 10.7799 7.0710 1.0188 45 1 9.4232 7.9922 1.7477 46 1 7.8312 8.5114 -1.4474 47 1 8.7216 9.2880 -0.0650 48 1 9.5197 11.9548 -1.3488 49 1 10.7902 6.3146 -1.1522 50 1 9.3298 6.3574 -2.2352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755054302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:00 Heat of formation + Delta-G solvation = -95.524526 kcal Electronic energy + Delta-G solvation = -29641.345371 eV Core-core repulsion = 25476.126425 eV Total energy + Delta-G solvation = -4165.218945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58376 -41.20787 -40.19915 -38.14748 -36.13396 -35.74252 -34.11862 -33.81086 -33.09904 -31.82126 -30.37572 -28.63597 -26.74091 -26.30182 -25.42885 -24.21569 -23.33530 -22.37402 -21.35105 -21.23355 -20.34475 -18.92785 -18.78511 -17.91953 -17.74738 -17.24524 -17.02221 -16.71031 -16.37174 -16.30761 -16.03896 -15.60986 -15.39814 -15.06569 -14.79497 -14.55023 -14.45497 -14.14439 -14.01690 -13.73327 -13.43780 -13.36760 -13.34222 -13.06675 -12.96060 -12.80924 -12.69335 -12.62000 -12.61267 -12.46887 -12.27568 -12.04572 -12.00972 -11.85017 -11.64644 -11.50671 -11.04930 -10.91137 -10.85496 -10.25993 -10.25141 -10.13347 -8.96731 -7.92560 -5.26767 1.44023 1.45580 1.48959 1.55133 1.59257 1.81092 2.37142 2.44358 2.78439 3.26437 3.43334 3.53298 3.60381 3.70613 3.78402 3.81671 3.92219 3.99734 4.06898 4.17556 4.24140 4.29608 4.43870 4.57483 4.58123 4.64177 4.71475 4.74312 4.80224 4.83658 4.92887 4.96956 5.00286 5.01745 5.08163 5.11165 5.13461 5.18558 5.23665 5.27304 5.33826 5.36246 5.40532 5.49800 5.88257 6.25706 6.39669 6.48449 6.89095 7.04958 7.20215 7.57567 8.52690 9.24471 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.001936 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.432427 B =14457.857005 C =15164.570579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.509 3.491 4 O -0.582 6.582 5 N -0.710 5.710 6 C 0.127 3.873 7 H 0.112 0.888 8 C -0.154 4.154 9 C 0.515 3.485 10 O -0.569 6.569 11 N -0.709 5.709 12 C 0.130 3.870 13 C 0.063 3.937 14 H 0.089 0.911 15 C -0.132 4.132 16 C -0.113 4.113 17 C 0.084 3.916 18 C 0.159 3.841 19 N -0.630 5.630 20 C -0.236 4.236 21 H 0.085 0.915 22 C -0.064 4.064 23 N -0.952 5.952 24 Si 0.981 3.019 25 H -0.279 1.279 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.116 3.884 29 O -0.373 6.373 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.416 0.584 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.414 0.586 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.009 0.991 47 H 0.049 0.951 48 H 0.250 0.750 49 H 0.063 0.937 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 -21.952 7.772 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.298 3.702 4 O -0.462 6.462 5 N -0.364 5.364 6 C 0.018 3.982 7 H 0.129 0.871 8 C -0.212 4.212 9 C 0.301 3.699 10 O -0.449 6.449 11 N -0.361 5.361 12 C 0.007 3.993 13 C 0.006 3.994 14 H 0.107 0.893 15 C -0.170 4.170 16 C -0.151 4.151 17 C 0.044 3.956 18 C 0.033 3.967 19 N -0.359 5.359 20 C -0.364 4.364 21 H 0.103 0.897 22 C -0.258 4.258 23 N -0.601 5.601 24 Si 0.808 3.192 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.198 1.198 28 C -0.009 4.009 29 O -0.292 6.292 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.254 0.746 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.251 0.749 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.941 -21.781 7.819 26.041 hybrid contribution 0.736 1.418 -0.840 1.805 sum -11.205 -20.363 6.979 24.268 Atomic orbital electron populations 1.21538 0.93321 1.02664 1.01944 1.21699 0.98192 0.91205 1.06636 1.21515 0.81293 0.93237 0.74138 1.90692 1.56121 1.48033 1.51322 1.45853 1.07690 1.07822 1.75063 1.20709 0.92384 0.86181 0.98877 0.87072 1.22084 1.03289 1.02340 0.93533 1.20687 0.87578 0.83464 0.78144 1.90674 1.69230 1.34318 1.50688 1.45837 1.17896 1.09995 1.62326 1.21567 0.82726 0.95231 0.99799 1.23417 0.98037 0.93940 0.84033 0.89290 1.23248 0.93877 0.97382 1.02485 1.22579 1.00674 0.98854 0.93001 1.23715 0.85907 0.90156 0.95871 1.22414 0.87236 0.94024 0.92996 1.45957 1.21339 1.01475 1.67080 1.19338 0.99612 0.87500 1.29911 0.89681 1.25643 1.00010 0.98073 1.02036 1.69998 1.29266 1.11608 1.49220 0.85125 0.78414 0.77399 0.78220 1.20557 1.22007 1.19840 1.22932 0.97125 0.85596 0.95234 1.88320 1.46056 1.65008 1.29798 0.89687 0.93497 0.93387 0.86437 0.86707 0.74613 0.89901 0.91393 0.91633 0.74915 0.88627 0.91463 0.86981 0.89146 0.90434 0.90928 0.97325 0.93295 0.94147 0.91909 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.20 71.98 0.66 -0.95 16 2 C -0.14 -1.39 6.42 29.85 0.19 -1.20 16 3 C 0.51 9.26 7.79 87.66 0.68 9.94 16 4 O -0.58 -15.22 15.64 -3.01 -0.05 -15.26 16 5 N -0.71 -11.93 4.95 -446.10 -2.21 -14.14 16 6 C 0.13 2.32 2.99 44.24 0.13 2.45 16 7 H 0.11 2.12 7.58 -2.39 -0.02 2.11 16 8 C -0.15 -2.63 9.38 71.98 0.68 -1.96 16 9 C 0.52 10.66 7.22 87.66 0.63 11.29 16 10 O -0.57 -14.64 15.84 -3.04 -0.05 -14.69 16 11 N -0.71 -13.46 5.37 -463.05 -2.49 -15.94 16 12 C 0.13 2.49 5.40 86.38 0.47 2.96 16 13 C 0.06 1.36 3.52 31.28 0.11 1.47 16 14 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 15 C -0.13 -2.65 6.58 32.12 0.21 -2.43 16 16 C -0.11 -3.40 6.32 31.70 0.20 -3.20 16 17 C 0.08 3.07 1.68 -10.31 -0.02 3.06 16 18 C 0.16 7.69 7.01 86.24 0.60 8.29 16 19 N -0.63 -32.47 3.67 -732.71 -2.69 -35.16 16 20 C -0.24 -13.19 10.70 84.04 0.90 -12.29 16 21 H 0.09 4.53 7.83 -2.91 -0.02 4.50 16 22 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 23 N -0.95 -57.21 11.39 21.65 0.25 -56.96 16 24 Si 0.98 45.32 29.55 68.60 2.03 47.34 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 28 C 0.12 4.77 8.37 86.24 0.72 5.49 16 29 O -0.37 -11.47 10.67 -148.98 -1.59 -13.06 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.42 6.04 7.79 -92.71 -0.72 5.31 16 36 H 0.08 1.31 7.57 -2.39 -0.02 1.30 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 39 H 0.41 7.13 7.83 -92.71 -0.73 6.40 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.09 1.66 8.05 -2.39 -0.02 1.64 16 44 H 0.08 2.45 7.83 -2.38 -0.02 2.43 16 45 H 0.07 2.27 8.01 -2.39 -0.02 2.25 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.05 2.60 7.05 -2.39 -0.02 2.58 16 48 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 49 H 0.06 2.34 7.98 -2.38 -0.02 2.32 16 50 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.00 408.09 -0.66 -75.66 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.50 Total: 22.48 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 6.64 Total: 19.73 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -7.14 Total: -122.20 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.69 Total: -43.01 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.00 -0.66 -75.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.865 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds