Wall clock time and date at job start Sat Apr 11 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99796 * 2 1 4 4 O 1.42900 * 109.46899 * 134.99952 * 3 2 1 5 5 C 1.42905 * 113.99557 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46853 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00005 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99655 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99790 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.50455 * 35.07368 * 9 8 6 11 11 C 1.53121 * 109.50099 * 275.00024 * 9 8 6 12 12 C 1.53123 * 109.16109 * 182.36702 * 11 9 8 13 13 C 1.53031 * 109.27801 * 57.65210 * 12 11 9 14 14 N 1.46853 * 109.52175 * 300.81980 * 13 12 11 15 15 C 1.46909 * 110.99736 * 185.83988 * 14 13 12 16 16 C 1.50699 * 109.47109 * 75.49347 * 15 14 13 17 17 O 1.21295 * 120.00129 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99906 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99776 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00102 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99795 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00276 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47030 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47280 * 120.00340 * 23 21 19 26 26 H 1.48501 * 109.47339 * 240.00442 * 23 21 19 27 27 C 1.46841 * 111.19647 * 61.74982 * 14 13 12 28 28 H 1.08997 * 109.47040 * 58.26822 * 27 14 13 29 29 C 1.52998 * 109.46184 * 178.24184 * 27 14 13 30 30 H 1.07998 * 120.00189 * 0.02562 * 1 2 3 31 31 H 1.08011 * 119.99670 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00189 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.46768 * 14.99802 * 3 2 1 34 34 H 1.09001 * 109.46555 * 254.99799 * 3 2 1 35 35 H 1.09007 * 109.46825 * 59.99830 * 5 4 3 36 36 H 1.08998 * 109.47098 * 299.99674 * 5 4 3 37 37 H 0.96997 * 120.00430 * 359.97438 * 8 6 5 38 38 H 1.08994 * 109.52803 * 62.45991 * 11 9 8 39 39 H 1.09001 * 109.57539 * 302.29775 * 11 9 8 40 40 H 1.08997 * 109.49978 * 297.70970 * 12 11 9 41 41 H 1.08999 * 109.50462 * 177.59416 * 12 11 9 42 42 H 1.09004 * 109.46520 * 180.81129 * 13 12 11 43 43 H 1.08993 * 109.45730 * 60.83580 * 13 12 11 44 44 H 1.09004 * 109.47066 * 315.49361 * 15 14 13 45 45 H 1.09000 * 109.47011 * 195.49456 * 15 14 13 46 46 H 0.96992 * 120.00016 * 0.02562 * 18 16 15 47 47 H 0.97003 * 119.99505 * 359.97438 * 22 21 19 48 48 H 1.08992 * 109.47460 * 51.93148 * 29 27 14 49 49 H 1.09006 * 109.46993 * 171.92941 * 29 27 14 50 50 H 1.09002 * 109.47143 * 291.92599 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0320 6 6 4.9938 2.2570 2.0621 7 8 5.0884 1.2112 2.6689 8 7 5.8588 3.2605 2.3097 9 6 6.9144 3.0873 3.3107 10 1 7.2649 2.0552 3.2952 11 6 6.3612 3.4184 4.6996 12 6 7.4854 3.2922 5.7315 13 6 8.6339 4.2264 5.3443 14 7 9.1287 3.8683 4.0088 15 6 10.3209 4.6532 3.6612 16 6 11.5118 4.1176 4.4134 17 8 11.3805 3.1745 5.1647 18 7 12.7230 4.6859 4.2504 19 6 13.8063 4.1989 4.9352 20 1 13.6892 3.3597 5.6048 21 6 15.0549 4.7851 4.7676 22 7 15.1973 5.8065 3.9532 23 14 16.5311 4.1211 5.7000 24 1 16.1085 2.9755 6.5451 25 1 17.5642 3.6685 4.7340 26 1 17.0945 5.1912 6.5619 27 6 8.0796 4.0275 2.9937 28 1 7.7254 5.0583 2.9958 29 6 8.6486 3.6870 1.6149 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3854 2.1161 0.2660 34 1 2.4754 1.4867 -0.9927 35 1 3.2687 3.2697 1.3191 36 1 4.3586 2.6396 0.0607 37 1 5.7829 4.0971 1.8247 38 1 5.5593 2.7230 4.9476 39 1 5.9744 4.4374 4.7052 40 1 7.8448 2.2634 5.7541 41 1 7.1081 3.5681 6.7162 42 1 9.4421 4.1283 6.0692 43 1 8.2770 5.2562 5.3354 44 1 10.1601 5.6970 3.9310 45 1 10.5048 4.5792 2.5893 46 1 12.8280 5.4398 3.6493 47 1 14.4308 6.1510 3.4688 48 1 9.1313 2.7105 1.6520 49 1 7.8405 3.6652 0.8836 50 1 9.3792 4.4428 1.3265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755714561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:32 Heat of formation + Delta-G solvation = -86.312029 kcal Electronic energy + Delta-G solvation = -29549.283540 eV Core-core repulsion = 25384.464079 eV Total energy + Delta-G solvation = -4164.819462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47873 -39.28310 -38.21032 -37.59963 -34.94963 -34.27073 -34.13268 -33.32213 -31.35485 -30.99944 -28.82402 -27.40713 -26.68069 -25.82530 -24.35920 -22.91597 -21.49618 -20.90590 -20.41084 -19.95206 -19.42092 -17.86180 -17.63917 -17.30277 -16.79319 -16.28222 -16.18047 -15.65114 -15.31132 -15.02936 -14.95816 -14.51887 -14.25423 -14.07663 -13.86654 -13.76554 -13.59760 -13.43911 -13.13175 -12.68090 -12.60198 -12.41950 -12.34183 -12.20730 -11.98157 -11.50189 -11.44229 -11.16721 -11.10951 -10.96078 -10.81747 -10.66988 -10.44376 -10.31510 -10.20994 -9.95953 -9.83671 -9.78346 -9.49060 -9.22079 -8.52389 -8.00079 -7.92495 -6.72310 -3.85151 1.66088 2.38863 2.52870 3.33615 3.36351 3.55184 3.58268 3.87986 3.94371 4.31694 4.34805 4.52088 4.59624 4.62752 4.65672 4.68723 4.74914 4.87737 4.94682 5.01802 5.03231 5.11233 5.22575 5.26912 5.29878 5.40008 5.47104 5.53031 5.62677 5.65054 5.79918 5.83040 5.94816 5.99466 6.02822 6.06237 6.10918 6.14996 6.18903 6.23960 6.33720 6.46457 6.60322 7.15231 7.26513 7.31042 7.85449 8.00790 8.11899 8.64321 8.85023 9.51690 9.93563 10.71436 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.001802 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.951498 B =15534.830702 C =15815.076462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.359 6.359 5 C 0.044 3.956 6 C 0.514 3.486 7 O -0.513 6.513 8 N -0.723 5.723 9 C 0.156 3.844 10 H 0.101 0.899 11 C -0.129 4.129 12 C -0.112 4.112 13 C 0.058 3.942 14 N -0.505 5.505 15 C 0.041 3.959 16 C 0.448 3.552 17 O -0.567 6.567 18 N -0.580 5.580 19 C -0.379 4.379 20 H 0.099 0.901 21 C -0.010 4.010 22 N -0.905 5.905 23 Si 1.095 2.905 24 H -0.284 1.284 25 H -0.284 1.284 26 H -0.285 1.285 27 C 0.078 3.922 28 H 0.041 0.959 29 C -0.152 4.152 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.398 0.602 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.025 0.975 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.374 0.626 47 H 0.261 0.739 48 H 0.071 0.929 49 H 0.059 0.941 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.432 -0.041 -9.853 28.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.036 4.036 6 C 0.298 3.702 7 O -0.386 6.386 8 N -0.377 5.377 9 C 0.052 3.948 10 H 0.119 0.881 11 C -0.167 4.167 12 C -0.150 4.150 13 C -0.069 4.069 14 N -0.230 5.230 15 C -0.090 4.090 16 C 0.233 3.767 17 O -0.449 6.449 18 N -0.219 5.219 19 C -0.509 4.509 20 H 0.117 0.883 21 C -0.212 4.212 22 N -0.544 5.544 23 Si 0.922 3.078 24 H -0.209 1.209 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.031 4.031 28 H 0.059 0.941 29 C -0.209 4.209 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.207 0.793 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.641 -1.943 -8.506 26.140 hybrid contribution -1.946 1.916 -1.166 2.969 sum -26.586 -0.026 -9.672 28.291 Atomic orbital electron populations 1.23847 0.95490 1.02360 0.99950 1.22720 0.95627 0.98208 1.00274 1.21627 0.88708 0.96285 0.92345 1.88063 1.44305 1.34853 1.60469 1.22207 0.93262 0.89340 0.98771 1.20162 0.82400 0.83983 0.83616 1.90768 1.71558 1.26812 1.49480 1.45905 1.32175 1.17129 1.42466 1.20968 0.85448 1.01780 0.86618 0.88088 1.21978 0.98799 1.01360 0.94597 1.21511 0.94259 1.01642 0.97584 1.22169 0.98140 0.95569 0.91057 1.61376 1.03768 1.56614 1.01237 1.21970 0.90845 0.95026 1.01178 1.19680 0.83660 0.86581 0.86736 1.90529 1.84543 1.29432 1.40396 1.41944 1.07564 1.30928 1.41432 1.20597 0.87816 1.17562 1.24901 0.88268 1.26467 1.00445 0.95705 0.98631 1.70847 1.33323 1.23819 1.26456 0.83061 0.73814 0.75551 0.75411 1.20925 1.21065 1.21096 1.21747 0.91666 0.96751 0.92949 0.94136 1.21985 1.00936 1.03283 0.94713 0.88426 0.87644 0.86325 0.92558 0.92026 0.90270 0.90156 0.76860 0.91323 0.92316 0.90400 0.91300 0.88911 0.95723 0.93401 0.88841 0.79325 0.92794 0.91011 0.92241 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 14.31 29.02 0.42 -0.59 16 2 C -0.15 -1.08 9.89 -36.02 -0.36 -1.43 16 3 C 0.09 0.60 6.35 36.01 0.23 0.82 16 4 O -0.36 -3.75 9.86 -55.14 -0.54 -4.30 16 5 C 0.04 0.34 6.42 36.00 0.23 0.57 16 6 C 0.51 5.73 7.87 -10.99 -0.09 5.64 16 7 O -0.51 -8.40 16.16 -14.36 -0.23 -8.63 16 8 N -0.72 -6.55 4.28 -53.72 -0.23 -6.78 16 9 C 0.16 1.88 2.05 -67.85 -0.14 1.74 16 10 H 0.10 1.55 7.58 -51.93 -0.39 1.16 16 11 C -0.13 -1.53 5.58 -26.61 -0.15 -1.67 16 12 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 13 C 0.06 0.90 5.11 -3.83 -0.02 0.88 16 14 N -0.50 -8.10 4.06 -228.12 -0.93 -9.02 16 15 C 0.04 0.71 5.31 -4.97 -0.03 0.68 16 16 C 0.45 10.49 7.49 -10.99 -0.08 10.41 16 17 O -0.57 -15.40 14.73 5.54 0.08 -15.32 16 18 N -0.58 -14.50 5.28 -10.96 -0.06 -14.56 16 19 C -0.38 -10.67 9.68 -14.93 -0.14 -10.82 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 22 N -0.90 -25.33 13.68 55.50 0.76 -24.57 16 23 Si 1.10 24.53 29.92 -169.99 -5.09 19.45 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.08 0.94 2.02 -67.73 -0.14 0.81 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 C -0.15 -1.69 8.53 37.16 0.32 -1.38 16 30 H 0.10 0.43 7.90 -52.49 -0.41 0.02 16 31 H 0.11 0.48 8.06 -52.48 -0.42 0.06 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.06 0.30 7.86 -51.93 -0.41 -0.11 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 2.26 8.45 -40.82 -0.34 1.91 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.74 6.69 -51.93 -0.35 1.39 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.75 8.00 -51.93 -0.42 0.33 16 45 H 0.09 1.44 5.43 -51.93 -0.28 1.16 16 46 H 0.37 8.62 6.73 -40.82 -0.27 8.34 16 47 H 0.26 7.00 6.78 -40.82 -0.28 6.72 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 50 H 0.06 0.66 6.40 -51.93 -0.33 0.32 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -36.35 405.31 -8.45 -44.79 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -8.11 Total: 9.23 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.21 Total: 3.60 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.45 Total: -54.93 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.69 Total: -28.25 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.09 Total: 19.45 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.35 -8.45 -44.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.518 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds