Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99796 * 2 1 4 4 O 1.42900 * 109.46899 * 134.99952 * 3 2 1 5 5 C 1.42905 * 113.99557 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46853 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00005 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99655 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99790 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.50455 * 35.07368 * 9 8 6 11 11 C 1.53121 * 109.50099 * 275.00024 * 9 8 6 12 12 C 1.53123 * 109.16109 * 182.36702 * 11 9 8 13 13 C 1.53031 * 109.27801 * 57.65210 * 12 11 9 14 14 N 1.46853 * 109.52175 * 300.81980 * 13 12 11 15 15 C 1.46909 * 110.99736 * 185.83988 * 14 13 12 16 16 C 1.50699 * 109.47109 * 75.49347 * 15 14 13 17 17 O 1.21295 * 120.00129 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99906 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99776 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00102 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99795 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00276 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47030 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47280 * 120.00340 * 23 21 19 26 26 H 1.48501 * 109.47339 * 240.00442 * 23 21 19 27 27 C 1.46841 * 111.19647 * 61.74982 * 14 13 12 28 28 H 1.08997 * 109.47040 * 58.26822 * 27 14 13 29 29 C 1.52998 * 109.46184 * 178.24184 * 27 14 13 30 30 H 1.07998 * 120.00189 * 0.02562 * 1 2 3 31 31 H 1.08011 * 119.99670 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00189 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.46768 * 14.99802 * 3 2 1 34 34 H 1.09001 * 109.46555 * 254.99799 * 3 2 1 35 35 H 1.09007 * 109.46825 * 59.99830 * 5 4 3 36 36 H 1.08998 * 109.47098 * 299.99674 * 5 4 3 37 37 H 0.96997 * 120.00430 * 359.97438 * 8 6 5 38 38 H 1.08994 * 109.52803 * 62.45991 * 11 9 8 39 39 H 1.09001 * 109.57539 * 302.29775 * 11 9 8 40 40 H 1.08997 * 109.49978 * 297.70970 * 12 11 9 41 41 H 1.08999 * 109.50462 * 177.59416 * 12 11 9 42 42 H 1.09004 * 109.46520 * 180.81129 * 13 12 11 43 43 H 1.08993 * 109.45730 * 60.83580 * 13 12 11 44 44 H 1.09004 * 109.47066 * 315.49361 * 15 14 13 45 45 H 1.09000 * 109.47011 * 195.49456 * 15 14 13 46 46 H 0.96992 * 120.00016 * 0.02562 * 18 16 15 47 47 H 0.97003 * 119.99505 * 359.97438 * 22 21 19 48 48 H 1.08992 * 109.47460 * 51.93148 * 29 27 14 49 49 H 1.09006 * 109.46993 * 171.92941 * 29 27 14 50 50 H 1.09002 * 109.47143 * 291.92599 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0320 6 6 4.9938 2.2570 2.0621 7 8 5.0884 1.2112 2.6689 8 7 5.8588 3.2605 2.3097 9 6 6.9144 3.0873 3.3107 10 1 7.2649 2.0552 3.2952 11 6 6.3612 3.4184 4.6996 12 6 7.4854 3.2922 5.7315 13 6 8.6339 4.2264 5.3443 14 7 9.1287 3.8683 4.0088 15 6 10.3209 4.6532 3.6612 16 6 11.5118 4.1176 4.4134 17 8 11.3805 3.1745 5.1647 18 7 12.7230 4.6859 4.2504 19 6 13.8063 4.1989 4.9352 20 1 13.6892 3.3597 5.6048 21 6 15.0549 4.7851 4.7676 22 7 15.1973 5.8065 3.9532 23 14 16.5311 4.1211 5.7000 24 1 16.1085 2.9755 6.5451 25 1 17.5642 3.6685 4.7340 26 1 17.0945 5.1912 6.5619 27 6 8.0796 4.0275 2.9937 28 1 7.7254 5.0583 2.9958 29 6 8.6486 3.6870 1.6149 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3854 2.1161 0.2660 34 1 2.4754 1.4867 -0.9927 35 1 3.2687 3.2697 1.3191 36 1 4.3586 2.6396 0.0607 37 1 5.7829 4.0971 1.8247 38 1 5.5593 2.7230 4.9476 39 1 5.9744 4.4374 4.7052 40 1 7.8448 2.2634 5.7541 41 1 7.1081 3.5681 6.7162 42 1 9.4421 4.1283 6.0692 43 1 8.2770 5.2562 5.3354 44 1 10.1601 5.6970 3.9310 45 1 10.5048 4.5792 2.5893 46 1 12.8280 5.4398 3.6493 47 1 14.4308 6.1510 3.4688 48 1 9.1313 2.7105 1.6520 49 1 7.8405 3.6652 0.8836 50 1 9.3792 4.4428 1.3265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755714561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -113.798359 kcal Electronic energy + Delta-G solvation = -29550.475437 eV Core-core repulsion = 25384.464079 eV Total energy + Delta-G solvation = -4166.011358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47182 -40.52290 -39.49879 -38.60572 -36.43198 -35.77062 -34.77147 -34.42705 -33.07962 -32.32657 -29.61827 -28.70415 -27.68422 -26.44841 -26.19065 -24.11884 -22.58398 -21.80656 -21.36750 -21.03671 -20.68645 -19.91725 -18.51155 -18.18720 -17.72958 -17.36647 -17.19188 -16.67507 -16.59671 -16.27948 -15.86451 -15.78521 -15.53509 -15.46567 -15.15405 -15.04906 -14.68997 -14.48247 -14.06484 -13.98236 -13.56000 -13.33342 -13.26914 -13.17488 -13.09264 -12.95109 -12.87411 -12.61026 -12.13647 -11.97187 -11.96188 -11.88892 -11.86183 -11.83102 -11.46447 -11.38479 -10.99963 -10.85032 -10.36165 -10.26421 -10.11436 -10.06229 -9.22664 -8.90352 -6.03605 1.18492 1.53630 1.54016 1.56818 1.78179 1.81996 2.05586 2.40020 2.67417 3.10163 3.18199 3.27334 3.54139 3.72635 3.74728 3.96631 3.98494 4.06438 4.17098 4.17612 4.23585 4.26485 4.29235 4.31625 4.32723 4.38335 4.46738 4.54214 4.56018 4.60789 4.77057 4.79011 4.88029 4.93782 4.97905 5.02672 5.17480 5.22236 5.31467 5.41118 5.62918 5.65397 5.69777 5.94867 6.01138 6.09498 6.19132 6.55920 6.62089 6.79934 7.24850 7.48487 7.99578 8.57903 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.001802 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.951498 B =15534.830702 C =15815.076462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.085 3.915 4 O -0.400 6.400 5 C 0.047 3.953 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.703 5.703 9 C 0.162 3.838 10 H 0.058 0.942 11 C -0.118 4.118 12 C -0.107 4.107 13 C 0.062 3.938 14 N -0.534 5.534 15 C 0.056 3.944 16 C 0.445 3.555 17 O -0.611 6.611 18 N -0.590 5.590 19 C -0.407 4.407 20 H 0.069 0.931 21 C -0.041 4.041 22 N -0.918 5.918 23 Si 1.136 2.864 24 H -0.283 1.283 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.083 3.917 28 H 0.075 0.925 29 C -0.150 4.150 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.420 0.580 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.117 0.883 46 H 0.384 0.616 47 H 0.260 0.740 48 H 0.040 0.960 49 H 0.089 0.911 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.426 2.608 -11.697 30.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.198 4.198 3 C 0.010 3.990 4 O -0.320 6.320 5 C -0.032 4.032 6 C 0.296 3.704 7 O -0.454 6.454 8 N -0.357 5.357 9 C 0.056 3.944 10 H 0.076 0.924 11 C -0.157 4.157 12 C -0.146 4.146 13 C -0.066 4.066 14 N -0.260 5.260 15 C -0.075 4.075 16 C 0.233 3.767 17 O -0.496 6.496 18 N -0.230 5.230 19 C -0.537 4.537 20 H 0.087 0.913 21 C -0.239 4.239 22 N -0.558 5.558 23 Si 0.957 3.043 24 H -0.208 1.208 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.025 4.025 28 H 0.093 0.907 29 C -0.208 4.208 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.258 0.742 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.135 0.865 46 H 0.218 0.782 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.108 0.892 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.666 0.776 -10.408 28.636 hybrid contribution -1.435 1.036 -0.599 1.868 sum -28.101 1.812 -11.007 30.234 Atomic orbital electron populations 1.24057 0.95011 1.03506 0.97816 1.22811 0.96381 0.98223 1.02347 1.21785 0.88294 0.96464 0.92482 1.88014 1.45564 1.36641 1.61774 1.22361 0.92531 0.89431 0.98837 1.20979 0.82856 0.83077 0.83497 1.90749 1.73279 1.29402 1.52011 1.45639 1.30698 1.17810 1.41575 1.20670 0.86409 0.99544 0.87742 0.92388 1.21881 0.97491 1.02637 0.93698 1.21456 0.94442 0.99377 0.99305 1.22065 0.97116 0.97372 0.90016 1.61234 1.04836 1.57401 1.02500 1.21810 0.88558 0.95882 1.01220 1.20904 0.84725 0.85374 0.85736 1.90506 1.85441 1.31383 1.42221 1.41979 1.07647 1.31556 1.41796 1.20527 0.89599 1.17683 1.25855 0.91311 1.27717 1.02438 0.95204 0.98572 1.70911 1.33516 1.24332 1.27047 0.82571 0.71418 0.75471 0.74886 1.20850 1.19728 1.19597 1.21801 0.90348 0.98355 0.91980 0.90684 1.21998 1.02057 1.01784 0.94926 0.86770 0.87000 0.87968 0.90557 0.90446 0.86728 0.86913 0.74187 0.92482 0.89401 0.93694 0.89604 0.93162 0.92999 0.90718 0.86502 0.78181 0.92899 0.94099 0.89249 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 14.31 67.78 0.97 -0.65 16 2 C -0.18 -2.46 9.89 25.65 0.25 -2.21 16 3 C 0.09 1.00 6.35 71.24 0.45 1.45 16 4 O -0.40 -7.87 9.86 -129.94 -1.28 -9.15 16 5 C 0.05 0.57 6.42 71.24 0.46 1.03 16 6 C 0.51 10.63 7.87 87.66 0.69 11.32 16 7 O -0.58 -19.45 16.16 16.00 0.26 -19.19 16 8 N -0.70 -10.84 4.28 -442.27 -1.89 -12.73 16 9 C 0.16 3.71 2.05 45.04 0.09 3.80 16 10 H 0.06 1.87 7.58 -2.38 -0.02 1.85 16 11 C -0.12 -2.65 5.58 30.68 0.17 -2.48 16 12 C -0.11 -2.92 6.09 30.65 0.19 -2.73 16 13 C 0.06 1.88 5.11 86.32 0.44 2.32 16 14 N -0.53 -16.71 4.06 -875.64 -3.55 -20.26 16 15 C 0.06 1.86 5.31 85.55 0.45 2.31 16 16 C 0.45 21.24 7.49 87.66 0.66 21.90 16 17 O -0.61 -34.77 14.73 -3.08 -0.05 -34.82 16 18 N -0.59 -30.01 5.28 -306.99 -1.62 -31.63 16 19 C -0.41 -23.57 9.68 84.04 0.81 -22.75 16 20 H 0.07 4.34 7.16 -2.91 -0.02 4.32 16 21 C -0.04 -2.25 5.50 84.93 0.47 -1.78 16 22 N -0.92 -51.14 13.68 21.66 0.30 -50.84 16 23 Si 1.14 49.44 29.92 68.60 2.05 51.49 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 C 0.08 1.80 2.02 44.94 0.09 1.89 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 C -0.15 -2.98 8.53 71.98 0.61 -2.36 16 30 H 0.11 0.71 7.90 -2.91 -0.02 0.69 16 31 H 0.11 0.89 8.06 -2.91 -0.02 0.86 16 32 H 0.10 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.08 0.55 7.86 -2.39 -0.02 0.54 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.42 2.78 8.45 -92.71 -0.78 2.00 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.95 6.69 -2.38 -0.02 1.94 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 45 H 0.12 3.33 5.43 -2.39 -0.01 3.31 16 46 H 0.38 17.73 6.73 -92.71 -0.62 17.11 16 47 H 0.26 13.92 6.78 -92.71 -0.63 13.30 16 48 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.09 1.21 7.29 -2.38 -0.02 1.20 16 50 H 0.07 1.28 6.40 -2.39 -0.02 1.26 16 Total: -1.00 -85.52 405.31 0.71 -84.81 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.32 Total: 31.27 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.81 Total: 11.06 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -6.77 Total: -115.47 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -1.07 Total: -63.15 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Total: -85.52 0.71 -84.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.987 kcal (2) G-P(sol) polarization free energy of solvation -85.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds