Wall clock time and date at job start Sat Apr 11 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99827 * 2 1 4 4 O 1.42898 * 109.46926 * 134.99890 * 3 2 1 5 5 C 1.42896 * 114.00009 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47432 * 180.02562 * 5 4 3 7 7 O 1.21290 * 119.99500 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00578 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00202 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.50405 * 325.07484 * 9 8 6 11 11 C 1.53115 * 109.49999 * 85.19929 * 9 8 6 12 12 C 1.53110 * 109.16600 * 62.28562 * 11 9 8 13 13 C 1.53036 * 109.27768 * 57.65099 * 12 11 9 14 14 N 1.46843 * 109.52595 * 300.82241 * 13 12 11 15 15 C 1.46901 * 111.00233 * 185.83714 * 14 13 12 16 16 C 1.50696 * 109.47322 * 301.25359 * 15 14 13 17 17 O 1.21289 * 120.00003 * 354.38181 * 16 15 14 18 18 N 1.34774 * 120.00100 * 174.38297 * 16 15 14 19 19 C 1.37096 * 119.99933 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00240 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99617 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99565 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47458 * 89.99829 * 23 21 19 25 25 H 1.48504 * 109.46850 * 209.99817 * 23 21 19 26 26 H 1.48497 * 109.47354 * 329.99462 * 23 21 19 27 27 C 1.46848 * 111.19799 * 61.74177 * 14 13 12 28 28 H 1.08997 * 109.45383 * 58.27162 * 27 14 13 29 29 C 1.53001 * 109.46248 * 178.24299 * 27 14 13 30 30 H 1.08000 * 120.00020 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.99629 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00020 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.46987 * 15.00102 * 3 2 1 34 34 H 1.08995 * 109.47151 * 254.99937 * 3 2 1 35 35 H 1.09006 * 109.47349 * 299.99618 * 5 4 3 36 36 H 1.09004 * 109.47587 * 60.00191 * 5 4 3 37 37 H 0.96995 * 119.99790 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.51889 * 182.19217 * 11 9 8 39 39 H 1.09002 * 109.52600 * 302.37407 * 11 9 8 40 40 H 1.08999 * 109.50726 * 297.71341 * 12 11 9 41 41 H 1.08997 * 109.54189 * 177.61424 * 12 11 9 42 42 H 1.09007 * 109.46083 * 180.80600 * 13 12 11 43 43 H 1.09005 * 109.46523 * 60.83936 * 13 12 11 44 44 H 1.09006 * 109.46927 * 61.25755 * 15 14 13 45 45 H 1.09006 * 109.47221 * 181.25068 * 15 14 13 46 46 H 0.97003 * 120.00164 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00065 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.47026 * 173.68255 * 29 27 14 49 49 H 1.08993 * 109.47271 * 293.68437 * 29 27 14 50 50 H 1.09004 * 109.47333 * 53.68949 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 6 4.9940 2.2568 2.0620 7 8 5.0897 1.2102 2.6675 8 7 5.8593 3.2601 2.3096 9 6 6.9150 3.0867 3.3104 10 1 6.5431 2.4700 4.1286 11 6 8.1247 2.4056 2.6646 12 6 8.6764 3.3064 1.5563 13 6 9.0454 4.6682 2.1488 14 7 7.8549 5.2792 2.7536 15 6 8.1390 6.6463 3.2101 16 6 9.2614 6.6173 4.2152 17 8 9.7057 5.5555 4.5976 18 7 9.7716 7.7712 4.6891 19 6 10.7924 7.7448 5.6039 20 1 11.1880 6.7993 5.9444 21 6 11.3180 8.9345 6.0928 22 7 10.8371 10.0849 5.6781 23 14 12.7094 8.8985 7.3388 24 1 14.0123 8.9048 6.6262 25 1 12.6192 10.0933 8.2161 26 1 12.6027 7.6689 8.1645 27 6 7.3351 4.4550 3.8522 28 1 8.1109 4.3243 4.6065 29 6 6.1245 5.1480 4.4807 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3855 2.1160 0.2660 34 1 2.4755 1.4868 -0.9926 35 1 4.3580 2.6409 0.0618 36 1 3.2677 3.2695 1.3206 37 1 5.7830 4.0969 1.8251 38 1 8.8952 2.2412 3.4178 39 1 7.8202 1.4493 2.2391 40 1 7.9187 3.4389 0.7840 41 1 9.5635 2.8467 1.1206 42 1 9.4253 5.3169 1.3594 43 1 9.8132 4.5366 2.9113 44 1 8.4300 7.2607 2.3580 45 1 7.2468 7.0673 3.6737 46 1 9.4161 8.6204 4.3835 47 1 11.2038 10.9154 6.0198 48 1 5.6708 4.4875 5.2196 49 1 6.4449 6.0700 4.9656 50 1 5.3951 5.3802 3.7046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755714562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:34 Heat of formation + Delta-G solvation = -89.576058 kcal Electronic energy + Delta-G solvation = -30271.347476 eV Core-core repulsion = 26106.386475 eV Total energy + Delta-G solvation = -4164.961000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.43891 -39.28842 -38.08923 -37.23191 -34.54853 -34.16208 -33.74186 -32.94543 -31.43182 -31.18436 -28.60225 -27.40962 -26.51130 -25.68745 -24.60276 -22.68968 -21.48156 -20.92048 -20.26896 -19.48380 -18.92483 -17.85795 -17.50564 -16.98641 -16.65635 -16.00115 -15.80260 -15.53831 -15.25589 -14.90367 -14.71488 -14.57900 -14.16366 -13.97478 -13.89171 -13.76224 -13.29417 -13.25986 -12.85658 -12.54358 -12.45365 -12.36398 -11.93404 -11.82108 -11.74530 -11.61204 -11.35484 -11.31706 -11.19170 -10.97887 -10.49366 -10.45218 -10.37341 -10.31537 -10.30844 -10.01384 -9.78294 -9.65832 -9.50545 -9.30193 -8.89661 -8.05339 -7.49264 -6.50745 -3.92130 1.75260 2.62874 2.82903 3.10633 3.20912 3.26294 3.76508 3.85357 4.10245 4.22925 4.57272 4.70379 4.74573 4.83445 4.88625 4.90546 4.98381 5.02899 5.04484 5.12594 5.14583 5.22044 5.35058 5.47703 5.53976 5.69519 5.73054 5.83224 5.92216 5.95847 5.98215 6.08849 6.14932 6.17146 6.18451 6.22358 6.24192 6.32378 6.36676 6.51243 6.60824 6.73423 6.79199 7.29334 7.40420 7.46155 7.62510 7.95682 8.28717 8.49940 9.07769 9.43615 9.93779 10.65633 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.002020 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.702123 B =13855.638723 C =14120.436266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.044 3.956 6 C 0.510 3.490 7 O -0.528 6.528 8 N -0.706 5.706 9 C 0.162 3.838 10 H 0.087 0.913 11 C -0.131 4.131 12 C -0.108 4.108 13 C 0.035 3.965 14 N -0.510 5.510 15 C 0.037 3.963 16 C 0.406 3.594 17 O -0.594 6.594 18 N -0.555 5.555 19 C -0.303 4.303 20 H 0.103 0.897 21 C 0.025 3.975 22 N -0.898 5.898 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.057 3.943 28 H 0.097 0.903 29 C -0.144 4.144 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.407 0.593 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 -9.986 -12.789 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.036 4.036 6 C 0.295 3.705 7 O -0.403 6.403 8 N -0.360 5.360 9 C 0.057 3.943 10 H 0.105 0.895 11 C -0.169 4.169 12 C -0.146 4.146 13 C -0.093 4.093 14 N -0.234 5.234 15 C -0.094 4.094 16 C 0.192 3.808 17 O -0.481 6.481 18 N -0.190 5.190 19 C -0.433 4.433 20 H 0.120 0.880 21 C -0.177 4.177 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.051 4.051 28 H 0.115 0.885 29 C -0.201 4.201 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.243 0.757 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.226 0.774 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.727 -11.381 -12.283 22.973 hybrid contribution 1.073 1.375 0.574 1.836 sum -14.654 -10.006 -11.709 21.259 Atomic orbital electron populations 1.23841 0.95505 1.02316 1.00126 1.22726 0.95613 0.98226 1.00130 1.21612 0.88835 0.96171 0.92411 1.88046 1.44281 1.35059 1.60384 1.22226 0.93370 0.89098 0.98936 1.20172 0.82385 0.84307 0.83663 1.90724 1.72770 1.26968 1.49865 1.45878 1.30926 1.17143 1.42048 1.21041 0.86609 0.96267 0.90361 0.89497 1.21939 0.97469 0.98529 0.99006 1.21492 1.00276 0.95203 0.97667 1.22355 0.93106 0.94549 0.99258 1.62427 1.30605 1.01432 1.28943 1.22113 0.97899 0.91533 0.97901 1.21051 0.87712 0.84962 0.87071 1.90402 1.64533 1.29691 1.63492 1.42055 1.31930 1.07080 1.37966 1.19710 1.10956 0.94466 1.18148 0.87957 1.25282 0.99083 0.94670 0.98704 1.69603 1.42559 0.97574 1.44085 0.85870 0.80612 0.77916 0.79984 1.20357 1.20849 1.19422 1.22133 0.97818 0.91284 0.93896 0.88505 1.21857 0.97313 1.00794 1.00157 0.88405 0.87729 0.86427 0.92565 0.92107 0.90317 0.90319 0.75734 0.90866 0.91827 0.92135 0.92032 0.91785 0.90319 0.89459 0.88892 0.77412 0.91745 0.92519 0.92204 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 14.31 29.01 0.42 -0.73 16 2 C -0.15 -1.18 9.89 -36.03 -0.36 -1.53 16 3 C 0.09 0.68 6.35 36.01 0.23 0.91 16 4 O -0.36 -4.18 9.86 -55.14 -0.54 -4.72 16 5 C 0.04 0.41 6.42 36.01 0.23 0.64 16 6 C 0.51 6.50 7.87 -10.99 -0.09 6.41 16 7 O -0.53 -9.15 16.16 -14.36 -0.23 -9.38 16 8 N -0.71 -8.05 3.80 -53.73 -0.20 -8.25 16 9 C 0.16 2.20 2.26 -67.85 -0.15 2.05 16 10 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 11 C -0.13 -1.79 5.67 -26.61 -0.15 -1.94 16 12 C -0.11 -1.39 5.93 -26.66 -0.16 -1.55 16 13 C 0.03 0.53 4.98 -3.84 -0.02 0.51 16 14 N -0.51 -7.32 4.17 -228.12 -0.95 -8.27 16 15 C 0.04 0.59 5.47 -4.98 -0.03 0.56 16 16 C 0.41 8.70 7.18 -10.99 -0.08 8.62 16 17 O -0.59 -14.31 11.22 5.55 0.06 -14.25 16 18 N -0.56 -13.25 5.29 -10.97 -0.06 -13.31 16 19 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 20 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -23.64 13.05 55.50 0.72 -22.92 16 23 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 C 0.06 0.85 1.77 -67.72 -0.12 0.73 16 28 H 0.10 1.82 5.76 -51.93 -0.30 1.52 16 29 C -0.14 -1.90 8.28 37.16 0.31 -1.59 16 30 H 0.10 0.51 7.90 -52.49 -0.41 0.10 16 31 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.06 0.36 7.86 -51.93 -0.41 -0.05 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.41 3.96 7.94 -40.82 -0.32 3.63 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.71 7.73 -51.93 -0.40 0.31 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.93 8.12 -51.92 -0.42 0.51 16 43 H 0.08 1.49 5.61 -51.93 -0.29 1.20 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.09 1.35 6.04 -51.93 -0.31 1.04 16 46 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 47 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.86 6.59 -51.93 -0.34 0.52 16 50 H 0.06 0.65 7.61 -51.93 -0.40 0.26 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -31.60 399.34 -8.48 -40.08 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -8.07 Total: 14.11 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.21 Total: 5.38 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.49 Total: -52.75 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.71 Total: -28.35 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.60 -8.48 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.494 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds