Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99884 * 2 1 4 4 C 1.52995 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47411 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47060 * 304.99963 * 5 4 3 7 7 C 1.52997 * 109.47039 * 65.00180 * 5 4 3 8 8 C 1.50699 * 109.46971 * 185.00387 * 5 4 3 9 9 O 1.21275 * 120.00527 * 359.97438 * 8 5 4 10 10 N 1.34784 * 119.99768 * 180.02562 * 8 5 4 11 11 C 1.46497 * 119.99867 * 180.02562 * 10 8 5 12 12 H 1.08994 * 110.85547 * 322.65581 * 11 10 8 13 13 C 1.54625 * 110.97262 * 86.45173 * 11 10 8 14 14 C 1.51284 * 104.20088 * 142.91277 * 13 11 10 15 15 O 1.21275 * 124.94268 * 163.70554 * 14 13 11 16 16 N 1.34422 * 110.10998 * 343.75157 * 14 13 11 17 17 C 1.46496 * 124.34569 * 179.57201 * 16 14 13 18 18 C 1.53948 * 113.74493 * 38.71231 * 17 16 14 19 19 N 1.47818 * 86.03409 * 222.08280 * 18 17 16 20 20 C 1.36933 * 134.45167 * 204.63877 * 19 18 17 21 21 H 1.08003 * 119.99912 * 173.35210 * 20 19 18 22 22 C 1.38810 * 120.00731 * 353.35187 * 20 19 18 23 23 N 1.31625 * 119.99720 * 5.06127 * 22 20 19 24 24 Si 1.86799 * 120.00486 * 185.06250 * 22 20 19 25 25 H 1.48506 * 109.47013 * 94.98604 * 24 22 20 26 26 H 1.48499 * 109.47104 * 214.98645 * 24 22 20 27 27 H 1.48499 * 109.47049 * 334.98911 * 24 22 20 28 28 C 1.47579 * 91.04923 * 24.54893 * 19 18 17 29 29 C 1.46762 * 111.30422 * 359.58360 * 16 14 13 30 30 H 1.08995 * 109.47350 * 299.99792 * 1 2 3 31 31 H 1.08997 * 109.47170 * 60.00021 * 1 2 3 32 32 H 1.09003 * 109.47097 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46808 * 59.99995 * 3 2 1 34 34 H 1.08994 * 109.47175 * 300.00178 * 3 2 1 35 35 H 1.09004 * 109.47166 * 300.00822 * 4 3 2 36 36 H 1.09009 * 109.46693 * 59.99698 * 4 3 2 37 37 H 1.08999 * 109.47491 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.47538 * 300.00394 * 7 5 4 39 39 H 1.09000 * 109.47371 * 59.99973 * 7 5 4 40 40 H 0.96997 * 119.99623 * 359.97438 * 10 8 5 41 41 H 1.08999 * 110.48922 * 261.59392 * 13 11 10 42 42 H 1.09002 * 110.48490 * 24.10120 * 13 11 10 43 43 H 1.09005 * 112.94311 * 170.30284 * 17 16 14 44 44 H 1.08996 * 113.76711 * 336.34800 * 18 17 16 45 45 H 1.08995 * 113.77049 * 107.74722 * 18 17 16 46 46 H 0.97001 * 120.00116 * 180.02562 * 23 22 20 47 47 H 1.09002 * 113.76372 * 221.14634 * 28 19 18 48 48 H 1.09002 * 113.76881 * 89.75507 * 28 19 18 49 49 H 1.09000 * 110.24894 * 258.01957 * 29 16 14 50 50 H 1.09004 * 110.24440 * 136.02115 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5824 0.0013 6 1 3.7674 3.1543 -0.8406 7 6 3.8077 3.2959 1.3087 8 6 5.6551 2.4656 -0.1220 9 8 6.1736 1.3722 -0.2020 10 7 6.4183 3.5764 -0.1423 11 6 7.8739 3.4629 -0.2628 12 1 8.2437 2.6036 0.2965 13 6 8.3019 3.3835 -1.7464 14 6 9.5919 4.1719 -1.8032 15 8 10.3952 4.1250 -2.7106 16 7 9.7185 4.9310 -0.7012 17 6 10.8572 5.8121 -0.4308 18 6 11.3825 6.5464 -1.6777 19 7 12.7338 6.2394 -1.1631 20 6 13.9715 6.8032 -1.3220 21 1 14.8074 6.4438 -0.7402 22 6 14.1519 7.8368 -2.2309 23 7 13.1163 8.3421 -2.8670 24 14 15.8645 8.5105 -2.5514 25 1 16.4468 7.8374 -3.7401 26 1 15.7827 9.9722 -2.8006 27 1 16.7253 8.2575 -1.3681 28 6 12.2130 5.0834 -0.4079 29 6 8.5696 4.7635 0.1966 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6436 -0.8892 37 1 4.2506 4.2918 1.3090 38 1 2.7246 3.3803 1.3979 39 1 4.1980 2.7240 2.1505 40 1 6.0036 4.4509 -0.0780 41 1 8.4747 2.3478 -2.0388 42 1 7.5460 3.8385 -2.3864 43 1 10.6952 6.4647 0.4271 44 1 11.1451 6.0445 -2.6157 45 1 11.1480 7.6108 -1.6921 46 1 13.2424 9.0640 -3.5024 47 1 12.6404 4.9818 0.5897 48 1 12.2201 4.1507 -0.9721 49 1 7.8892 5.6096 0.1004 50 1 8.9081 4.6661 1.2282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108591101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = -54.967249 kcal Electronic energy + Delta-G solvation = -29439.377744 eV Core-core repulsion = 25275.917494 eV Total energy + Delta-G solvation = -4163.460250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84983 -39.90028 -38.37987 -37.27533 -36.45612 -35.26842 -34.14662 -32.18179 -30.56803 -29.46817 -27.58902 -27.09503 -26.80110 -25.30627 -24.72715 -23.44948 -22.69166 -21.39818 -20.58374 -20.13208 -18.33539 -17.73975 -17.07653 -16.75333 -16.63427 -16.42620 -16.25924 -15.69000 -15.39995 -15.23491 -14.70287 -14.62372 -14.29005 -13.97375 -13.86173 -13.60300 -13.51816 -13.45819 -13.27198 -12.96209 -12.43856 -12.33160 -12.12234 -12.06395 -11.83271 -11.74681 -11.59128 -11.40368 -11.37434 -11.32919 -11.14666 -10.83702 -10.70576 -10.23967 -10.13727 -10.05805 -9.95328 -9.66920 -9.48818 -9.16230 -8.64676 -8.18836 -6.79545 -5.73448 -3.04130 2.29908 2.60850 2.93223 3.25381 3.37825 3.43086 3.49030 3.49724 4.11742 4.26250 4.37165 4.45900 4.49649 4.52447 4.70520 4.74479 4.79926 4.85590 4.89790 4.91797 4.96317 4.98090 5.20188 5.23613 5.26202 5.29919 5.33668 5.36444 5.50516 5.54284 5.67023 5.67588 5.70028 5.74251 5.84539 5.85683 6.13024 6.29780 6.53063 6.59806 6.70522 6.88489 7.11477 7.27346 7.48918 7.58679 7.64297 7.88199 8.01255 8.55682 9.08653 9.74968 10.64909 11.44569 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042257 B = 0.001727 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.448509 B =16209.565654 C =16298.773741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.060 3.940 4 C -0.101 4.101 5 C -0.108 4.108 6 H 0.101 0.899 7 C -0.149 4.149 8 C 0.521 3.479 9 O -0.530 6.530 10 N -0.720 5.720 11 C 0.135 3.865 12 H 0.110 0.890 13 C -0.167 4.167 14 C 0.515 3.485 15 O -0.506 6.506 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.156 3.844 19 N -0.605 5.605 20 C -0.222 4.222 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.111 3.889 29 C 0.100 3.900 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.403 0.597 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.253 0.747 47 H 0.042 0.958 48 H 0.040 0.960 49 H 0.073 0.927 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.280 -10.130 10.350 31.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.017 4.017 4 C -0.139 4.139 5 C -0.129 4.129 6 H 0.119 0.881 7 C -0.206 4.206 8 C 0.307 3.693 9 O -0.405 6.405 10 N -0.373 5.373 11 C 0.029 3.971 12 H 0.128 0.872 13 C -0.208 4.208 14 C 0.301 3.699 15 O -0.380 6.380 16 N -0.342 5.342 17 C -0.005 4.005 18 C 0.030 3.970 19 N -0.331 5.331 20 C -0.350 4.350 21 H 0.099 0.901 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.017 4.017 29 C -0.025 4.025 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.238 0.762 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.091 0.909 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -27.033 -10.825 9.692 30.691 hybrid contribution 0.424 1.103 -0.269 1.212 sum -26.609 -9.721 9.423 29.855 Atomic orbital electron populations 1.22749 0.80933 1.02882 0.99954 1.87896 1.19737 1.27971 1.95407 1.22613 0.94030 0.84776 1.00251 1.21287 0.92284 0.95230 1.05133 1.21216 0.91978 0.98745 1.00968 0.88081 1.21879 1.02575 1.00358 0.95822 1.20540 0.89118 0.84108 0.75525 1.90747 1.74765 1.26632 1.48351 1.45951 1.06428 1.09424 1.75472 1.21799 0.79974 0.99143 0.96145 0.87187 1.22824 0.97384 1.03080 0.97558 1.20604 0.87243 0.80060 0.81984 1.90796 1.46215 1.64897 1.36134 1.48498 1.20849 1.44362 1.20461 1.24103 0.82288 0.92057 1.02051 1.22736 0.82750 0.98425 0.93075 1.45686 1.04398 1.27800 1.55209 1.18992 0.84861 1.12959 1.18146 0.90135 1.24834 0.97525 0.99396 0.98550 1.69847 1.28095 1.28101 1.30335 0.86117 0.83675 0.77918 0.78174 1.21593 1.21724 1.20536 1.22929 0.90489 0.92601 0.95632 1.22187 0.88783 0.96150 0.95399 0.94067 0.94041 0.89563 0.92986 0.93256 0.90224 0.90004 0.91708 0.91238 0.91627 0.76177 0.87844 0.87876 0.87662 0.92431 0.91606 0.93653 0.93958 0.94196 0.90932 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.26 10.70 -35.23 -0.38 -3.63 16 3 C 0.06 0.36 5.70 37.15 0.21 0.57 16 4 C -0.10 -0.73 4.40 -26.74 -0.12 -0.85 16 5 C -0.11 -0.58 2.72 -91.78 -0.25 -0.83 16 6 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 7 C -0.15 -0.53 8.84 37.16 0.33 -0.20 16 8 C 0.52 4.43 7.15 -10.98 -0.08 4.35 16 9 O -0.53 -6.83 15.66 5.56 0.09 -6.74 16 10 N -0.72 -4.90 5.08 -52.23 -0.27 -5.17 16 11 C 0.13 1.26 3.43 -66.30 -0.23 1.03 16 12 H 0.11 1.14 7.72 -51.93 -0.40 0.74 16 13 C -0.17 -2.02 6.59 -26.74 -0.18 -2.19 16 14 C 0.52 8.79 7.42 -10.86 -0.08 8.71 16 15 O -0.51 -11.44 14.61 5.56 0.08 -11.36 16 16 N -0.61 -9.23 3.15 -166.63 -0.53 -9.76 16 17 C 0.10 1.85 4.81 -70.15 -0.34 1.51 16 18 C 0.16 3.89 6.81 -2.83 -0.02 3.87 16 19 N -0.60 -16.37 3.70 -177.88 -0.66 -17.03 16 20 C -0.22 -6.49 10.70 -15.06 -0.16 -6.65 16 21 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.92 -28.19 11.51 55.49 0.64 -27.55 16 24 Si 0.91 22.78 29.56 -169.99 -5.02 17.76 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.11 2.43 8.44 -2.97 -0.03 2.40 16 29 C 0.10 0.95 7.07 -3.12 -0.02 0.93 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.24 6.56 -51.92 -0.34 -0.10 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.74 7.96 -51.92 -0.41 0.33 16 37 H 0.06 0.15 7.56 -51.93 -0.39 -0.24 16 38 H 0.07 0.18 6.56 -51.93 -0.34 -0.16 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.40 1.59 7.78 -40.82 -0.32 1.27 16 41 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 43 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 44 H 0.06 1.59 5.72 -51.93 -0.30 1.30 16 45 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.04 0.94 7.25 -51.93 -0.38 0.56 16 49 H 0.07 0.55 7.77 -51.93 -0.40 0.14 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -38.46 401.92 -8.21 -46.67 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -8.28 Total: -2.89 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 0.06 Total: 13.64 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.81 Total: -59.50 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.21 Total: -21.73 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.46 -8.21 -46.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108591101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.300 kcal (2) G-P(sol) polarization free energy of solvation -38.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds