Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99884 * 2 1 4 4 C 1.52995 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47411 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47060 * 304.99963 * 5 4 3 7 7 C 1.52997 * 109.47039 * 65.00180 * 5 4 3 8 8 C 1.50699 * 109.46971 * 185.00387 * 5 4 3 9 9 O 1.21275 * 120.00527 * 359.97438 * 8 5 4 10 10 N 1.34784 * 119.99768 * 180.02562 * 8 5 4 11 11 C 1.46497 * 119.99867 * 180.02562 * 10 8 5 12 12 H 1.08994 * 110.85547 * 322.65581 * 11 10 8 13 13 C 1.54625 * 110.97262 * 86.45173 * 11 10 8 14 14 C 1.51284 * 104.20088 * 142.91277 * 13 11 10 15 15 O 1.21275 * 124.94268 * 163.70554 * 14 13 11 16 16 N 1.34422 * 110.10998 * 343.75157 * 14 13 11 17 17 C 1.46496 * 124.34569 * 179.57201 * 16 14 13 18 18 C 1.53948 * 113.74493 * 38.71231 * 17 16 14 19 19 N 1.47818 * 86.03409 * 222.08280 * 18 17 16 20 20 C 1.36933 * 134.45167 * 204.63877 * 19 18 17 21 21 H 1.08003 * 119.99912 * 173.35210 * 20 19 18 22 22 C 1.38810 * 120.00731 * 353.35187 * 20 19 18 23 23 N 1.31625 * 119.99720 * 5.06127 * 22 20 19 24 24 Si 1.86799 * 120.00486 * 185.06250 * 22 20 19 25 25 H 1.48506 * 109.47013 * 94.98604 * 24 22 20 26 26 H 1.48499 * 109.47104 * 214.98645 * 24 22 20 27 27 H 1.48499 * 109.47049 * 334.98911 * 24 22 20 28 28 C 1.47579 * 91.04923 * 24.54893 * 19 18 17 29 29 C 1.46762 * 111.30422 * 359.58360 * 16 14 13 30 30 H 1.08995 * 109.47350 * 299.99792 * 1 2 3 31 31 H 1.08997 * 109.47170 * 60.00021 * 1 2 3 32 32 H 1.09003 * 109.47097 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46808 * 59.99995 * 3 2 1 34 34 H 1.08994 * 109.47175 * 300.00178 * 3 2 1 35 35 H 1.09004 * 109.47166 * 300.00822 * 4 3 2 36 36 H 1.09009 * 109.46693 * 59.99698 * 4 3 2 37 37 H 1.08999 * 109.47491 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.47538 * 300.00394 * 7 5 4 39 39 H 1.09000 * 109.47371 * 59.99973 * 7 5 4 40 40 H 0.96997 * 119.99623 * 359.97438 * 10 8 5 41 41 H 1.08999 * 110.48922 * 261.59392 * 13 11 10 42 42 H 1.09002 * 110.48490 * 24.10120 * 13 11 10 43 43 H 1.09005 * 112.94311 * 170.30284 * 17 16 14 44 44 H 1.08996 * 113.76711 * 336.34800 * 18 17 16 45 45 H 1.08995 * 113.77049 * 107.74722 * 18 17 16 46 46 H 0.97001 * 120.00116 * 180.02562 * 23 22 20 47 47 H 1.09002 * 113.76372 * 221.14634 * 28 19 18 48 48 H 1.09002 * 113.76881 * 89.75507 * 28 19 18 49 49 H 1.09000 * 110.24894 * 258.01957 * 29 16 14 50 50 H 1.09004 * 110.24440 * 136.02115 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5824 0.0013 6 1 3.7674 3.1543 -0.8406 7 6 3.8077 3.2959 1.3087 8 6 5.6551 2.4656 -0.1220 9 8 6.1736 1.3722 -0.2020 10 7 6.4183 3.5764 -0.1423 11 6 7.8739 3.4629 -0.2628 12 1 8.2437 2.6036 0.2965 13 6 8.3019 3.3835 -1.7464 14 6 9.5919 4.1719 -1.8032 15 8 10.3952 4.1250 -2.7106 16 7 9.7185 4.9310 -0.7012 17 6 10.8572 5.8121 -0.4308 18 6 11.3825 6.5464 -1.6777 19 7 12.7338 6.2394 -1.1631 20 6 13.9715 6.8032 -1.3220 21 1 14.8074 6.4438 -0.7402 22 6 14.1519 7.8368 -2.2309 23 7 13.1163 8.3421 -2.8670 24 14 15.8645 8.5105 -2.5514 25 1 16.4468 7.8374 -3.7401 26 1 15.7827 9.9722 -2.8006 27 1 16.7253 8.2575 -1.3681 28 6 12.2130 5.0834 -0.4079 29 6 8.5696 4.7635 0.1966 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6436 -0.8892 37 1 4.2506 4.2918 1.3090 38 1 2.7246 3.3803 1.3979 39 1 4.1980 2.7240 2.1505 40 1 6.0036 4.4509 -0.0780 41 1 8.4747 2.3478 -2.0388 42 1 7.5460 3.8385 -2.3864 43 1 10.6952 6.4647 0.4271 44 1 11.1451 6.0445 -2.6157 45 1 11.1480 7.6108 -1.6921 46 1 13.2424 9.0640 -3.5024 47 1 12.6404 4.9818 0.5897 48 1 12.2201 4.1507 -0.9721 49 1 7.8892 5.6096 0.1004 50 1 8.9081 4.6661 1.2282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108591101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -84.825506 kcal Electronic energy + Delta-G solvation = -29440.672495 eV Core-core repulsion = 25275.917494 eV Total energy + Delta-G solvation = -4164.755001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93140 -40.84461 -39.04976 -38.80714 -37.67705 -35.81336 -35.24773 -34.14731 -31.74991 -30.05712 -29.16863 -28.32696 -27.17657 -26.62622 -25.83864 -25.18893 -23.42889 -22.23784 -22.09727 -20.86179 -19.78257 -18.79593 -18.33876 -17.88710 -17.67646 -17.20298 -16.98041 -16.91718 -16.49848 -16.18367 -15.86073 -15.74442 -15.58180 -15.14461 -14.96083 -14.73154 -14.57839 -14.37817 -14.02632 -13.88929 -13.59780 -13.44986 -13.41045 -13.26840 -12.85787 -12.79284 -12.66398 -12.58008 -12.54203 -12.25716 -12.11681 -12.03675 -11.89410 -11.84069 -11.80420 -11.51730 -11.13039 -10.82681 -10.64610 -10.52041 -10.09593 -9.58069 -8.93849 -7.95323 -5.28532 1.42163 1.46161 1.54586 1.56586 1.65529 1.83549 2.15837 2.47880 2.90969 3.23241 3.33153 3.47368 3.49140 3.67559 3.78050 3.92076 3.95442 4.03219 4.07293 4.24239 4.31602 4.37879 4.49262 4.51983 4.52644 4.57657 4.59267 4.61533 4.65005 4.76691 4.83189 4.89219 4.89493 4.92088 4.99053 5.00407 5.08463 5.17436 5.24052 5.30099 5.42372 5.44989 5.46717 5.83607 5.88427 6.24152 6.29910 6.56400 6.87293 7.21387 7.28326 7.56095 8.52399 9.22894 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042257 B = 0.001727 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.448509 B =16209.565654 C =16298.773741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.060 3.940 4 C -0.100 4.100 5 C -0.098 4.098 6 H 0.128 0.872 7 C -0.146 4.146 8 C 0.519 3.481 9 O -0.579 6.579 10 N -0.702 5.702 11 C 0.150 3.850 12 H 0.103 0.897 13 C -0.155 4.155 14 C 0.503 3.497 15 O -0.574 6.574 16 N -0.605 5.605 17 C 0.137 3.863 18 C 0.152 3.848 19 N -0.635 5.635 20 C -0.239 4.239 21 H 0.087 0.913 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.982 3.018 25 H -0.293 1.293 26 H -0.289 1.289 27 H -0.261 1.261 28 C 0.110 3.890 29 C 0.101 3.899 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.422 0.578 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.142 0.858 44 H 0.022 0.978 45 H 0.040 0.960 46 H 0.249 0.751 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.108 0.892 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.420 -9.088 12.790 34.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.016 4.016 4 C -0.138 4.138 5 C -0.119 4.119 6 H 0.145 0.855 7 C -0.204 4.204 8 C 0.307 3.693 9 O -0.458 6.458 10 N -0.355 5.355 11 C 0.043 3.957 12 H 0.121 0.879 13 C -0.196 4.196 14 C 0.292 3.708 15 O -0.453 6.453 16 N -0.338 5.338 17 C 0.033 3.967 18 C 0.025 3.975 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.809 3.191 25 H -0.221 1.221 26 H -0.215 1.215 27 H -0.186 1.186 28 C -0.017 4.017 29 C -0.022 4.022 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.261 0.739 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.160 0.840 44 H 0.040 0.960 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.037 0.963 49 H 0.126 0.874 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -29.247 -9.775 12.207 33.166 hybrid contribution 1.026 0.681 -1.038 1.611 sum -28.221 -9.093 11.169 31.684 Atomic orbital electron populations 1.22907 0.79448 1.03610 1.01051 1.87851 1.21542 1.29500 1.95669 1.22690 0.92775 0.84297 1.01824 1.21236 0.93645 0.96076 1.02847 1.21214 0.89306 0.98079 1.03288 0.85459 1.21907 1.03779 1.00820 0.93859 1.21142 0.90436 0.83499 0.74227 1.90741 1.75816 1.28641 1.50608 1.45741 1.05104 1.10170 1.74520 1.21524 0.81485 0.99027 0.93634 0.87926 1.22748 0.95013 1.01616 1.00228 1.21471 0.87996 0.80038 0.81332 1.90762 1.48841 1.66995 1.38688 1.48450 1.21379 1.42862 1.21111 1.23419 0.82591 0.91159 0.99502 1.22535 0.83256 0.97164 0.94510 1.46115 1.04518 1.29577 1.55913 1.19448 0.86262 1.12888 1.18170 0.89567 1.25747 1.01504 1.00112 0.98631 1.70046 1.30229 1.28693 1.31066 0.85016 0.79025 0.76878 0.78157 1.22054 1.21510 1.18551 1.23024 0.92364 0.90592 0.95680 1.22542 0.87093 0.97222 0.95296 0.92762 0.93064 0.89201 0.91036 0.91828 0.92231 0.92684 0.89593 0.89667 0.92791 0.73865 0.88761 0.86213 0.84049 0.96045 0.94134 0.94194 0.91255 0.96266 0.87420 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.43 -6.75 10.70 -148.98 -1.59 -8.35 16 3 C 0.06 0.61 5.70 71.98 0.41 1.02 16 4 C -0.10 -1.36 4.40 30.59 0.13 -1.23 16 5 C -0.10 -0.79 2.72 -11.54 -0.03 -0.82 16 6 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 7 C -0.15 -0.49 8.84 71.98 0.64 0.15 16 8 C 0.52 7.72 7.15 87.66 0.63 8.35 16 9 O -0.58 -14.72 15.66 -3.01 -0.05 -14.77 16 10 N -0.70 -7.04 5.08 -437.54 -2.22 -9.26 16 11 C 0.15 2.38 3.43 46.05 0.16 2.54 16 12 H 0.10 1.91 7.72 -2.39 -0.02 1.89 16 13 C -0.15 -3.58 6.59 30.59 0.20 -3.38 16 14 C 0.50 17.28 7.42 87.90 0.65 17.93 16 15 O -0.57 -27.40 14.61 -3.01 -0.04 -27.45 16 16 N -0.60 -17.34 3.15 -799.70 -2.52 -19.86 16 17 C 0.14 5.01 4.81 46.75 0.22 5.23 16 18 C 0.15 7.80 6.81 86.44 0.59 8.39 16 19 N -0.63 -35.01 3.70 -716.68 -2.65 -37.66 16 20 C -0.24 -14.21 10.70 84.03 0.90 -13.31 16 21 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.95 -60.41 11.51 21.65 0.25 -60.16 16 24 Si 0.98 47.55 29.56 68.60 2.03 49.58 16 25 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 28 C 0.11 4.79 8.44 86.48 0.73 5.52 16 29 C 0.10 1.49 7.07 86.83 0.61 2.11 16 30 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.44 6.56 -2.38 -0.02 0.42 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.03 7.96 -2.38 -0.02 1.01 16 37 H 0.09 -0.05 7.56 -2.39 -0.02 -0.07 16 38 H 0.08 0.06 6.56 -2.39 -0.02 0.05 16 39 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.42 1.16 7.78 -92.71 -0.72 0.44 16 41 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.12 2.38 8.08 -2.39 -0.02 2.36 16 43 H 0.14 4.24 8.14 -2.38 -0.02 4.22 16 44 H 0.02 1.27 5.72 -2.39 -0.01 1.26 16 45 H 0.04 2.25 7.37 -2.39 -0.02 2.23 16 46 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.02 0.94 7.25 -2.39 -0.02 0.92 16 49 H 0.11 0.97 7.77 -2.39 -0.02 0.96 16 50 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -91.55 401.92 0.97 -90.58 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.22 Total: 6.94 kcal Atomic # 6 Polarization: 22.87 SS G_CDS: 7.56 Total: 30.43 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -7.15 Total: -126.96 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -1.69 Total: -50.57 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -91.55 0.97 -90.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108591101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.754 kcal (2) G-P(sol) polarization free energy of solvation -91.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds