Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00140 * 2 1 4 4 H 1.09005 * 109.47095 * 29.99786 * 3 2 1 5 5 C 1.52999 * 109.46829 * 270.00183 * 3 2 1 6 6 C 1.53001 * 109.47328 * 149.99846 * 3 2 1 7 7 C 1.50699 * 109.46964 * 295.00368 * 6 3 2 8 8 O 1.21283 * 120.00165 * 359.97438 * 7 6 3 9 9 N 1.34775 * 119.99774 * 180.02562 * 7 6 3 10 10 C 1.46504 * 119.99814 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.66848 * 34.73132 * 10 9 7 12 12 C 1.54836 * 110.61101 * 157.68339 * 10 9 7 13 13 C 1.55841 * 103.51952 * 118.50714 * 12 10 9 14 14 H 1.09008 * 116.14877 * 159.22384 * 13 12 10 15 15 C 1.55844 * 105.03368 * 288.26872 * 13 12 10 16 16 C 1.54839 * 103.51869 * 71.73114 * 15 13 12 17 17 C 1.55845 * 110.61170 * 271.78037 * 10 9 7 18 18 H 1.08998 * 116.15315 * 82.26652 * 17 10 9 19 19 N 1.50652 * 101.02814 * 32.99461 * 13 12 10 20 20 C 1.46905 * 110.99875 * 189.76170 * 19 13 12 21 21 C 1.50699 * 109.46731 * 175.72382 * 20 19 13 22 22 O 1.21292 * 120.00323 * 5.75368 * 21 20 19 23 23 N 1.34786 * 119.99933 * 185.75066 * 21 20 19 24 24 C 1.37088 * 120.00152 * 180.02562 * 23 21 20 25 25 H 1.08002 * 120.00426 * 359.97438 * 24 23 21 26 26 C 1.38953 * 119.99821 * 180.02562 * 24 23 21 27 27 N 1.31405 * 120.00328 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 119.99783 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.47079 * 59.99749 * 28 26 24 30 30 H 1.48501 * 109.47177 * 299.99969 * 28 26 24 31 31 H 1.48502 * 109.46815 * 179.97438 * 28 26 24 32 32 H 1.08994 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47262 * 300.00502 * 1 2 3 34 34 H 1.09002 * 109.47012 * 60.00130 * 1 2 3 35 35 H 1.08993 * 109.47885 * 60.00092 * 5 3 2 36 36 H 1.09003 * 109.46685 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47189 * 299.99345 * 5 3 2 38 38 H 1.08998 * 109.47117 * 175.00013 * 6 3 2 39 39 H 1.08999 * 109.46645 * 54.99683 * 6 3 2 40 40 H 0.96993 * 120.00136 * 359.97438 * 9 7 6 41 41 H 1.08995 * 110.61638 * 359.97438 * 12 10 9 42 42 H 1.09004 * 110.60749 * 237.01683 * 12 10 9 43 43 H 1.09005 * 110.61478 * 190.23369 * 15 13 12 44 44 H 1.08992 * 110.61161 * 313.21844 * 15 13 12 45 45 H 1.08996 * 110.61466 * 118.50339 * 16 15 13 46 46 H 1.09000 * 110.61135 * 241.49430 * 16 15 13 47 47 H 1.08998 * 109.47094 * 55.72315 * 20 19 13 48 48 H 1.08997 * 109.46804 * 295.72244 * 20 19 13 49 49 H 0.97000 * 119.99242 * 359.97438 * 23 21 20 50 50 H 0.97003 * 120.00037 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3590 1.2633 0.7213 7 6 3.1416 0.9236 2.1733 8 8 2.0186 0.7343 2.5903 9 7 4.1952 0.8311 3.0087 10 6 3.9838 0.5014 4.4204 11 1 3.1512 -0.1930 4.5329 12 6 5.2736 -0.0888 5.0413 13 6 5.6332 0.9263 6.1678 14 1 6.2856 0.5553 6.9584 15 6 6.1374 2.1975 5.4205 16 6 4.8476 2.7878 4.7996 17 6 3.7365 1.7943 5.2547 18 1 2.7199 2.1872 5.2419 19 7 4.2615 1.3724 6.6023 20 6 4.3460 2.5190 7.5169 21 6 2.9570 3.0021 7.8462 22 8 1.9906 2.3844 7.4518 23 7 2.7887 4.1207 8.5790 24 6 1.5253 4.5600 8.8791 25 1 0.6647 4.0101 8.5279 26 6 1.3518 5.7135 9.6342 27 7 2.3988 6.3830 10.0611 28 14 -0.3699 6.3125 10.0424 29 1 -1.0877 5.2667 10.8147 30 1 -1.1077 6.5928 8.7845 31 1 -0.2829 7.5537 10.8530 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.2569 1.8014 -1.9564 36 1 2.6615 2.7669 -1.4425 37 1 2.8830 1.0774 -1.9563 38 1 3.8427 2.2370 0.6443 39 1 3.9931 0.5051 0.2618 40 1 5.0933 0.9828 2.6753 41 1 6.0700 -0.1365 4.2987 42 1 5.0803 -1.0759 5.4615 43 1 6.5835 2.9031 6.1214 44 1 6.8497 1.9272 4.6410 45 1 4.6544 3.7858 5.1928 46 1 4.9206 2.8100 3.7122 47 1 4.9070 3.3230 7.0406 48 1 4.8521 2.2161 8.4334 49 1 3.5617 4.6145 8.8948 50 1 3.2929 6.0722 9.8488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109051695.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -86.710730 kcal Electronic energy + Delta-G solvation = -30839.840224 eV Core-core repulsion = 26675.003473 eV Total energy + Delta-G solvation = -4164.836751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23793 -39.57800 -38.09095 -37.72835 -34.57830 -34.14732 -33.06704 -31.36464 -30.79677 -30.19926 -29.20848 -27.93061 -26.66412 -26.14462 -23.96838 -22.52181 -21.76458 -20.75842 -20.13956 -19.65746 -19.07086 -17.84206 -17.35370 -17.01526 -16.39631 -16.24283 -15.98663 -15.65120 -15.26386 -15.04063 -14.70154 -14.51688 -13.92697 -13.77493 -13.68643 -13.28637 -13.18702 -13.08019 -12.82562 -12.56816 -12.36996 -12.22447 -12.06967 -11.98296 -11.74897 -11.63628 -11.58004 -11.39532 -11.15518 -11.04075 -10.92901 -10.88007 -10.71985 -10.18801 -10.18108 -9.82115 -9.81386 -9.68669 -9.48374 -8.97188 -8.51985 -8.15509 -7.98307 -6.71522 -3.84058 2.68145 3.06297 3.34193 3.37378 3.57666 3.63615 3.90168 3.94466 4.30997 4.47990 4.50865 4.54831 4.62231 4.78545 4.91612 5.00278 5.03872 5.09543 5.16430 5.20068 5.20661 5.26106 5.27732 5.28969 5.31295 5.38570 5.41804 5.44115 5.58724 5.67286 5.69314 5.70580 5.73266 5.79884 5.86936 5.92625 6.03480 6.07013 6.07217 6.19928 6.41894 6.50111 6.85673 7.08482 7.14264 7.47171 7.85296 8.12495 8.27149 8.64863 8.85671 9.52326 9.94280 10.72118 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002939 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.708641 B = 9523.180976 C =11226.353122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.099 3.901 4 H 0.070 0.930 5 C -0.174 4.174 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.521 6.521 9 N -0.724 5.724 10 C 0.149 3.851 11 H 0.099 0.901 12 C -0.115 4.115 13 C 0.040 3.960 14 H 0.115 0.885 15 C -0.153 4.153 16 C -0.158 4.158 17 C 0.054 3.946 18 H 0.126 0.874 19 N -0.466 5.466 20 C 0.025 3.975 21 C 0.447 3.553 22 O -0.568 6.568 23 N -0.579 5.579 24 C -0.379 4.379 25 H 0.098 0.902 26 C -0.010 4.010 27 N -0.904 5.904 28 Si 1.090 2.910 29 H -0.284 1.284 30 H -0.284 1.284 31 H -0.279 1.279 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.396 0.604 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.374 0.626 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.164 -9.269 -19.846 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.297 6.297 3 C 0.040 3.960 4 H 0.088 0.912 5 C -0.232 4.232 6 C -0.180 4.180 7 C 0.298 3.702 8 O -0.396 6.396 9 N -0.376 5.376 10 C 0.044 3.956 11 H 0.117 0.883 12 C -0.154 4.154 13 C -0.069 4.069 14 H 0.133 0.867 15 C -0.192 4.192 16 C -0.197 4.197 17 C -0.056 4.056 18 H 0.144 0.856 19 N -0.188 5.188 20 C -0.107 4.107 21 C 0.232 3.768 22 O -0.451 6.451 23 N -0.217 5.217 24 C -0.509 4.509 25 H 0.116 0.884 26 C -0.212 4.212 27 N -0.543 5.543 28 Si 0.916 3.084 29 H -0.210 1.210 30 H -0.211 1.211 31 H -0.204 1.204 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.230 0.770 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.106 0.894 49 H 0.207 0.793 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.531 -9.240 -18.671 22.152 hybrid contribution 2.272 0.192 -1.084 2.525 sum 9.803 -9.048 -19.756 23.838 Atomic orbital electron populations 1.22707 0.80887 1.02463 0.99876 1.87861 1.19927 1.26909 1.94965 1.21779 0.93629 0.86024 0.94554 0.91210 1.22299 1.02597 1.01572 0.96735 1.21852 0.99179 1.04215 0.92785 1.20533 0.84994 0.76903 0.87794 1.90752 1.23136 1.48005 1.77700 1.46114 1.09355 1.72653 1.09501 1.21861 0.98513 0.96542 0.78697 0.88254 1.22842 0.96330 0.99214 0.96970 1.24533 0.91573 0.94871 0.95936 0.86726 1.23301 0.97697 0.98309 0.99914 1.23284 0.95212 1.00143 1.01064 1.24783 0.99430 0.93568 0.87810 0.85619 1.67431 1.13734 1.29089 1.08556 1.22125 0.97306 0.93549 0.97745 1.19668 0.89963 0.83080 0.84043 1.90544 1.41317 1.57211 1.56020 1.41938 1.08520 1.23334 1.47930 1.20523 0.84879 1.11066 1.34411 0.88391 1.26476 1.06906 0.93209 0.94635 1.70901 0.98627 1.40245 1.44540 0.83148 0.72105 0.76360 0.76752 1.20995 1.21053 1.20449 0.90032 0.93290 0.94720 0.92152 0.91503 0.91762 0.87838 0.88195 0.77004 0.90873 0.90040 0.91419 0.91333 0.91497 0.91034 0.92525 0.89388 0.79306 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.82 101.05 1.09 1.49 16 2 O -0.38 -4.66 9.58 -49.64 -0.48 -5.13 16 3 C 0.10 1.00 2.27 -26.73 -0.06 0.94 16 4 H 0.07 0.80 7.60 -51.93 -0.39 0.41 16 5 C -0.17 -1.27 9.53 37.16 0.35 -0.91 16 6 C -0.14 -1.21 5.41 -27.88 -0.15 -1.37 16 7 C 0.51 6.46 7.71 -10.99 -0.08 6.37 16 8 O -0.52 -9.15 15.11 -8.85 -0.13 -9.29 16 9 N -0.72 -7.66 3.67 -51.40 -0.19 -7.85 16 10 C 0.15 2.00 3.11 -65.44 -0.20 1.80 16 11 H 0.10 1.64 7.64 -51.93 -0.40 1.25 16 12 C -0.12 -1.20 6.19 -24.25 -0.15 -1.35 16 13 C 0.04 0.47 4.96 -62.56 -0.31 0.16 16 14 H 0.11 1.18 8.14 -51.92 -0.42 0.76 16 15 C -0.15 -1.63 5.63 -24.24 -0.14 -1.76 16 16 C -0.16 -2.07 5.51 -24.24 -0.13 -2.21 16 17 C 0.05 0.89 4.12 -62.56 -0.26 0.63 16 18 H 0.13 2.71 6.95 -51.93 -0.36 2.35 16 19 N -0.47 -7.81 5.30 -207.01 -1.10 -8.90 16 20 C 0.02 0.45 5.15 -4.97 -0.03 0.42 16 21 C 0.45 10.87 7.47 -10.98 -0.08 10.79 16 22 O -0.57 -16.07 14.53 5.55 0.08 -15.98 16 23 N -0.58 -14.90 5.28 -10.96 -0.06 -14.96 16 24 C -0.38 -10.92 9.68 -14.94 -0.14 -11.07 16 25 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 26 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 27 N -0.90 -25.72 13.68 55.50 0.76 -24.96 16 28 Si 1.09 24.87 29.92 -169.99 -5.09 19.79 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 31 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.03 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 2.85 7.96 -40.82 -0.32 2.53 16 41 H 0.07 0.57 7.36 -51.93 -0.38 0.18 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.73 7.31 -51.93 -0.38 0.35 16 44 H 0.07 0.56 7.82 -51.93 -0.41 0.16 16 45 H 0.07 1.01 7.24 -51.93 -0.38 0.63 16 46 H 0.07 0.80 6.43 -51.93 -0.33 0.46 16 47 H 0.06 0.93 4.86 -51.93 -0.25 0.68 16 48 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.37 8.90 6.73 -40.82 -0.27 8.62 16 50 H 0.26 7.11 6.78 -40.82 -0.28 6.84 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -36.64 392.26 -8.63 -45.26 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -7.95 Total: 12.58 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.39 Total: 3.54 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.58 Total: -56.68 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.53 Total: -30.41 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.79 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.64 -8.63 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109051695.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.447 kcal (2) G-P(sol) polarization free energy of solvation -36.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds