Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00140 * 2 1 4 4 H 1.09005 * 109.47095 * 29.99786 * 3 2 1 5 5 C 1.52999 * 109.46829 * 270.00183 * 3 2 1 6 6 C 1.53001 * 109.47328 * 149.99846 * 3 2 1 7 7 C 1.50699 * 109.46964 * 295.00368 * 6 3 2 8 8 O 1.21283 * 120.00165 * 359.97438 * 7 6 3 9 9 N 1.34775 * 119.99774 * 180.02562 * 7 6 3 10 10 C 1.46504 * 119.99814 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.66848 * 34.73132 * 10 9 7 12 12 C 1.54836 * 110.61101 * 157.68339 * 10 9 7 13 13 C 1.55841 * 103.51952 * 118.50714 * 12 10 9 14 14 H 1.09008 * 116.14877 * 159.22384 * 13 12 10 15 15 C 1.55844 * 105.03368 * 288.26872 * 13 12 10 16 16 C 1.54839 * 103.51869 * 71.73114 * 15 13 12 17 17 C 1.55845 * 110.61170 * 271.78037 * 10 9 7 18 18 H 1.08998 * 116.15315 * 82.26652 * 17 10 9 19 19 N 1.50652 * 101.02814 * 32.99461 * 13 12 10 20 20 C 1.46905 * 110.99875 * 189.76170 * 19 13 12 21 21 C 1.50699 * 109.46731 * 175.72382 * 20 19 13 22 22 O 1.21292 * 120.00323 * 5.75368 * 21 20 19 23 23 N 1.34786 * 119.99933 * 185.75066 * 21 20 19 24 24 C 1.37088 * 120.00152 * 180.02562 * 23 21 20 25 25 H 1.08002 * 120.00426 * 359.97438 * 24 23 21 26 26 C 1.38953 * 119.99821 * 180.02562 * 24 23 21 27 27 N 1.31405 * 120.00328 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 119.99783 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.47079 * 59.99749 * 28 26 24 30 30 H 1.48501 * 109.47177 * 299.99969 * 28 26 24 31 31 H 1.48502 * 109.46815 * 179.97438 * 28 26 24 32 32 H 1.08994 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47262 * 300.00502 * 1 2 3 34 34 H 1.09002 * 109.47012 * 60.00130 * 1 2 3 35 35 H 1.08993 * 109.47885 * 60.00092 * 5 3 2 36 36 H 1.09003 * 109.46685 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47189 * 299.99345 * 5 3 2 38 38 H 1.08998 * 109.47117 * 175.00013 * 6 3 2 39 39 H 1.08999 * 109.46645 * 54.99683 * 6 3 2 40 40 H 0.96993 * 120.00136 * 359.97438 * 9 7 6 41 41 H 1.08995 * 110.61638 * 359.97438 * 12 10 9 42 42 H 1.09004 * 110.60749 * 237.01683 * 12 10 9 43 43 H 1.09005 * 110.61478 * 190.23369 * 15 13 12 44 44 H 1.08992 * 110.61161 * 313.21844 * 15 13 12 45 45 H 1.08996 * 110.61466 * 118.50339 * 16 15 13 46 46 H 1.09000 * 110.61135 * 241.49430 * 16 15 13 47 47 H 1.08998 * 109.47094 * 55.72315 * 20 19 13 48 48 H 1.08997 * 109.46804 * 295.72244 * 20 19 13 49 49 H 0.97000 * 119.99242 * 359.97438 * 23 21 20 50 50 H 0.97003 * 120.00037 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3590 1.2633 0.7213 7 6 3.1416 0.9236 2.1733 8 8 2.0186 0.7343 2.5903 9 7 4.1952 0.8311 3.0087 10 6 3.9838 0.5014 4.4204 11 1 3.1512 -0.1930 4.5329 12 6 5.2736 -0.0888 5.0413 13 6 5.6332 0.9263 6.1678 14 1 6.2856 0.5553 6.9584 15 6 6.1374 2.1975 5.4205 16 6 4.8476 2.7878 4.7996 17 6 3.7365 1.7943 5.2547 18 1 2.7199 2.1872 5.2419 19 7 4.2615 1.3724 6.6023 20 6 4.3460 2.5190 7.5169 21 6 2.9570 3.0021 7.8462 22 8 1.9906 2.3844 7.4518 23 7 2.7887 4.1207 8.5790 24 6 1.5253 4.5600 8.8791 25 1 0.6647 4.0101 8.5279 26 6 1.3518 5.7135 9.6342 27 7 2.3988 6.3830 10.0611 28 14 -0.3699 6.3125 10.0424 29 1 -1.0877 5.2667 10.8147 30 1 -1.1077 6.5928 8.7845 31 1 -0.2829 7.5537 10.8530 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.2569 1.8014 -1.9564 36 1 2.6615 2.7669 -1.4425 37 1 2.8830 1.0774 -1.9563 38 1 3.8427 2.2370 0.6443 39 1 3.9931 0.5051 0.2618 40 1 5.0933 0.9828 2.6753 41 1 6.0700 -0.1365 4.2987 42 1 5.0803 -1.0759 5.4615 43 1 6.5835 2.9031 6.1214 44 1 6.8497 1.9272 4.6410 45 1 4.6544 3.7858 5.1928 46 1 4.9206 2.8100 3.7122 47 1 4.9070 3.3230 7.0406 48 1 4.8521 2.2161 8.4334 49 1 3.5617 4.6145 8.8948 50 1 3.2929 6.0722 9.8488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109051695.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -116.018389 kcal Electronic energy + Delta-G solvation = -30841.111099 eV Core-core repulsion = 26675.003473 eV Total energy + Delta-G solvation = -4166.107626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36599 -40.65595 -39.87367 -38.75634 -36.43099 -35.57038 -33.87307 -33.23837 -32.27105 -31.20239 -30.19196 -28.82376 -27.81217 -27.40441 -25.86507 -23.41766 -22.74874 -22.01282 -21.36656 -20.80745 -20.49111 -19.96761 -18.32365 -18.02665 -17.83888 -17.48372 -17.08616 -16.93305 -16.55436 -16.11616 -15.94508 -15.78773 -15.55230 -15.36528 -14.94185 -14.79976 -14.27587 -13.84709 -13.76189 -13.55890 -13.43966 -13.41578 -13.27736 -12.98156 -12.97005 -12.86234 -12.71850 -12.62326 -12.54466 -12.35270 -11.98985 -11.95480 -11.93180 -11.84062 -11.69200 -11.53500 -11.18182 -10.85504 -10.54959 -10.41229 -10.14598 -10.01329 -9.53167 -8.97079 -6.10245 1.48503 1.49716 1.70316 1.78509 1.98087 2.12640 2.36910 2.74653 2.85639 3.11894 3.16778 3.49568 3.59955 3.74622 3.81849 3.85790 4.05421 4.08601 4.17059 4.19280 4.27199 4.29411 4.31270 4.38719 4.41999 4.43664 4.51457 4.54860 4.59860 4.70875 4.72848 4.78612 4.84375 4.88075 4.91585 5.01574 5.04140 5.14702 5.15745 5.23930 5.29813 5.45493 5.54711 5.73080 5.89896 5.95701 6.26265 6.54809 6.61526 6.72518 7.36673 7.40551 7.91695 8.50989 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002939 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.708641 B = 9523.180976 C =11226.353122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.399 6.399 3 C 0.088 3.912 4 H 0.043 0.957 5 C -0.165 4.165 6 C -0.131 4.131 7 C 0.502 3.498 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.157 3.843 11 H 0.054 0.946 12 C -0.102 4.102 13 C 0.044 3.956 14 H 0.141 0.859 15 C -0.141 4.141 16 C -0.150 4.150 17 C 0.039 3.961 18 H 0.055 0.945 19 N -0.499 5.499 20 C 0.041 3.959 21 C 0.442 3.558 22 O -0.616 6.616 23 N -0.588 5.588 24 C -0.411 4.411 25 H 0.066 0.934 26 C -0.040 4.040 27 N -0.915 5.915 28 Si 1.132 2.868 29 H -0.274 1.274 30 H -0.275 1.275 31 H -0.267 1.267 32 H 0.089 0.911 33 H 0.022 0.978 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.419 0.581 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.039 0.961 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.111 0.889 49 H 0.384 0.616 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.078 -9.364 -21.589 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.318 6.318 3 C 0.030 3.970 4 H 0.061 0.939 5 C -0.222 4.222 6 C -0.170 4.170 7 C 0.290 3.710 8 O -0.462 6.462 9 N -0.358 5.358 10 C 0.050 3.950 11 H 0.072 0.928 12 C -0.140 4.140 13 C -0.063 4.063 14 H 0.158 0.842 15 C -0.180 4.180 16 C -0.189 4.189 17 C -0.071 4.071 18 H 0.073 0.927 19 N -0.222 5.222 20 C -0.091 4.091 21 C 0.230 3.770 22 O -0.501 6.501 23 N -0.228 5.228 24 C -0.540 4.540 25 H 0.085 0.915 26 C -0.238 4.238 27 N -0.554 5.554 28 Si 0.951 3.049 29 H -0.199 1.199 30 H -0.201 1.201 31 H -0.192 1.192 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.258 0.742 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.058 0.942 46 H 0.112 0.888 47 H 0.096 0.904 48 H 0.129 0.871 49 H 0.218 0.782 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.543 -9.331 -20.435 25.257 hybrid contribution 1.013 0.165 -0.567 1.173 sum 12.557 -9.166 -21.001 26.129 Atomic orbital electron populations 1.22727 0.80623 1.02978 0.99594 1.87810 1.20436 1.28442 1.95162 1.22002 0.93813 0.84696 0.96482 0.93885 1.22227 1.02964 1.02728 0.94327 1.21943 0.98984 1.06851 0.89237 1.21416 0.84327 0.75609 0.89613 1.90743 1.25742 1.50716 1.79023 1.45915 1.10242 1.71579 1.08056 1.21541 0.99165 0.94177 0.80082 0.92788 1.22859 0.95347 0.98498 0.97253 1.24774 0.88974 0.95638 0.96924 0.84170 1.23290 0.96502 0.97265 1.00899 1.23225 0.95363 0.97804 1.02548 1.24468 0.97187 0.96255 0.89149 0.92665 1.67400 1.17784 1.28374 1.08660 1.21981 0.92677 0.94958 0.99459 1.20925 0.92341 0.81796 0.81955 1.90521 1.43911 1.58421 1.57221 1.41979 1.07944 1.24167 1.48664 1.20468 0.85500 1.11987 1.36034 0.91549 1.27794 1.09793 0.92663 0.93594 1.70967 0.98955 1.40510 1.44960 0.82664 0.68436 0.76558 0.77208 1.19938 1.20097 1.19184 0.89203 0.95934 0.92587 0.92397 0.89610 0.90639 0.84376 0.85432 0.74235 0.86357 0.89961 0.90936 0.87022 0.94165 0.88773 0.90394 0.87110 0.78178 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.82 113.37 1.23 2.07 16 2 O -0.40 -10.01 9.58 -135.20 -1.30 -11.30 16 3 C 0.09 1.75 2.27 30.59 0.07 1.81 16 4 H 0.04 1.06 7.60 -2.38 -0.02 1.04 16 5 C -0.17 -2.05 9.53 71.98 0.69 -1.36 16 6 C -0.13 -1.98 5.41 29.85 0.16 -1.82 16 7 C 0.50 12.68 7.71 87.66 0.68 13.35 16 8 O -0.58 -22.24 15.11 10.74 0.16 -22.07 16 9 N -0.70 -13.76 3.67 -434.93 -1.60 -15.36 16 10 C 0.16 4.22 3.11 46.60 0.14 4.37 16 11 H 0.05 1.94 7.64 -2.39 -0.02 1.93 16 12 C -0.10 -1.77 6.19 32.20 0.20 -1.57 16 13 C 0.04 0.88 4.96 46.14 0.23 1.11 16 14 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 15 C -0.14 -2.34 5.63 32.21 0.18 -2.16 16 16 C -0.15 -3.72 5.51 32.21 0.18 -3.54 16 17 C 0.04 1.36 4.12 46.15 0.19 1.55 16 18 H 0.05 2.68 6.95 -2.39 -0.02 2.66 16 19 N -0.50 -16.69 5.30 -808.84 -4.29 -20.98 16 20 C 0.04 1.48 5.15 85.56 0.44 1.92 16 21 C 0.44 22.59 7.47 87.66 0.65 23.24 16 22 O -0.62 -37.53 14.53 -3.07 -0.04 -37.57 16 23 N -0.59 -31.57 5.28 -306.98 -1.62 -33.19 16 24 C -0.41 -24.75 9.68 84.04 0.81 -23.93 16 25 H 0.07 4.35 7.16 -2.91 -0.02 4.33 16 26 C -0.04 -2.27 5.50 84.93 0.47 -1.80 16 27 N -0.91 -52.36 13.68 21.66 0.30 -52.06 16 28 Si 1.13 50.70 29.92 68.60 2.05 52.76 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 30 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 31 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.02 0.60 8.09 -2.39 -0.02 0.58 16 34 H 0.06 0.98 7.87 -2.39 -0.02 0.96 16 35 H 0.06 0.75 7.87 -2.39 -0.02 0.73 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.42 4.16 7.96 -92.71 -0.74 3.43 16 41 H 0.12 1.06 7.36 -2.39 -0.02 1.04 16 42 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.07 1.21 7.31 -2.38 -0.02 1.19 16 44 H 0.11 1.00 7.82 -2.39 -0.02 0.98 16 45 H 0.04 1.20 7.24 -2.39 -0.02 1.18 16 46 H 0.09 1.83 6.43 -2.39 -0.02 1.82 16 47 H 0.08 2.47 4.86 -2.39 -0.01 2.46 16 48 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 49 H 0.38 18.75 6.73 -92.71 -0.62 18.13 16 50 H 0.26 14.32 6.78 -92.71 -0.63 13.69 16 Total: -1.00 -90.30 392.26 -0.27 -90.57 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.25 Total: 35.97 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.32 Total: 13.24 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -7.21 Total: -121.59 kcal Atomic # 8 Polarization: -69.77 SS G_CDS: -1.18 Total: -70.95 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.76 kcal Total: -90.30 -0.27 -90.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109051695.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.446 kcal (2) G-P(sol) polarization free energy of solvation -90.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds