Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46465 * 2 1 4 4 C 1.50692 * 109.47106 * 119.99768 * 2 1 3 5 5 O 1.21286 * 120.00017 * 112.53054 * 4 2 1 6 6 N 1.34781 * 120.00376 * 292.25610 * 4 2 1 7 7 C 1.47074 * 120.88380 * 175.92800 * 6 4 2 8 8 C 1.53690 * 108.28120 * 128.75198 * 7 6 4 9 9 N 1.46902 * 109.25749 * 54.07778 * 8 7 6 10 10 C 1.46898 * 111.00456 * 172.60817 * 9 8 7 11 11 C 1.50703 * 109.46844 * 59.06598 * 10 9 8 12 12 O 1.21293 * 120.00098 * 5.90738 * 11 10 9 13 13 N 1.34777 * 120.00025 * 185.90029 * 11 10 9 14 14 C 1.37095 * 119.99657 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00422 * 0.02562 * 14 13 11 16 16 C 1.38953 * 119.99525 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00219 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99794 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47691 * 89.99634 * 18 16 14 20 20 H 1.48504 * 109.46942 * 209.99544 * 18 16 14 21 21 H 1.48504 * 109.47277 * 329.99345 * 18 16 14 22 22 C 1.46898 * 111.27177 * 296.76101 * 9 8 7 23 23 C 1.47083 * 120.87712 * 356.19830 * 6 4 2 24 24 C 1.52997 * 109.47078 * 239.99966 * 2 1 3 25 25 H 1.09000 * 109.82089 * 185.56558 * 24 2 1 26 26 C 1.54387 * 109.83149 * 64.58869 * 24 2 1 27 27 C 1.55307 * 102.24940 * 219.12836 * 26 24 2 28 28 C 1.54944 * 100.94613 * 34.13357 * 27 26 24 29 29 O 1.43236 * 109.83134 * 306.45566 * 24 2 1 30 30 H 1.09001 * 109.46810 * 173.66941 * 1 2 3 31 31 H 1.08998 * 109.47134 * 293.67025 * 1 2 3 32 32 H 1.08998 * 109.47313 * 53.67329 * 1 2 3 33 33 H 1.09003 * 109.62577 * 248.51960 * 7 6 4 34 34 H 1.09003 * 109.63029 * 9.09504 * 7 6 4 35 35 H 1.09004 * 109.64693 * 294.08158 * 8 7 6 36 36 H 1.09001 * 109.42406 * 173.94308 * 8 7 6 37 37 H 1.08995 * 109.47287 * 179.06760 * 10 9 8 38 38 H 1.08998 * 109.47273 * 299.07195 * 10 9 8 39 39 H 0.96993 * 119.99947 * 0.02562 * 13 11 10 40 40 H 0.97001 * 120.00219 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.49408 * 303.14448 * 22 9 8 42 42 H 1.08997 * 109.49511 * 183.06231 * 22 9 8 43 43 H 1.08999 * 109.62967 * 350.89841 * 23 6 4 44 44 H 1.08996 * 109.62597 * 111.28508 * 23 6 4 45 45 H 1.09002 * 110.84426 * 337.31356 * 26 24 2 46 46 H 1.08991 * 110.84865 * 100.93911 * 26 24 2 47 47 H 1.08996 * 111.12665 * 276.20874 * 27 26 24 48 48 H 1.09003 * 111.12401 * 152.05253 * 27 26 24 49 49 H 1.08995 * 110.31122 * 204.63778 * 28 27 26 50 50 H 1.09002 * 110.39403 * 82.50973 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.6140 -1.7693 1.1243 6 7 1.8402 -0.1662 2.4484 7 6 2.2427 -0.8834 3.6677 8 6 3.1017 0.0623 4.5221 9 7 2.3642 1.3119 4.7519 10 6 3.0732 2.1735 5.7073 11 6 4.4461 2.4920 5.1736 12 8 4.7607 2.1357 4.0577 13 7 5.3244 3.1728 5.9362 14 6 6.5731 3.4629 5.4504 15 1 6.8530 3.1463 4.4566 16 6 7.4788 4.1644 6.2369 17 7 7.1382 4.5501 7.4460 18 14 9.1801 4.5603 5.5747 19 1 9.1478 5.8720 4.8792 20 1 10.1475 4.6204 6.6998 21 1 9.5976 3.5034 4.6188 22 6 2.1112 2.0211 3.4906 23 6 1.2172 1.1582 2.5937 24 6 2.0401 -0.7212 -1.2492 25 1 3.1255 -0.8115 -1.2066 26 6 1.6271 0.0640 -2.5127 27 6 1.2541 -1.0744 -3.5010 28 6 0.6557 -2.1229 -2.5297 29 8 1.4472 -2.0223 -1.3352 30 1 -0.3633 -1.0214 -0.1133 31 1 -0.3633 0.4126 0.9412 32 1 -0.3634 0.6088 -0.8279 33 1 1.3556 -1.1823 4.2263 34 1 2.8238 -1.7655 3.3988 35 1 4.0342 0.2809 4.0017 36 1 3.3209 -0.4119 5.4787 37 1 2.5140 3.0986 5.8466 38 1 3.1657 1.6574 6.6629 39 1 5.0730 3.4575 6.8287 40 1 7.7703 5.0401 7.9948 41 1 3.0575 2.2123 2.9847 42 1 1.6121 2.9674 3.6992 43 1 1.1201 1.6267 1.6143 44 1 0.2321 1.0515 3.0479 45 1 0.7650 0.6996 -2.3098 46 1 2.4621 0.6512 -2.8947 47 1 2.1393 -1.4644 -4.0032 48 1 0.5103 -0.7391 -4.2239 49 1 0.7380 -3.1231 -2.9550 50 1 -0.3868 -1.8890 -2.3135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113317952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -102.256799 kcal Electronic energy + Delta-G solvation = -30952.685308 eV Core-core repulsion = 26787.174429 eV Total energy + Delta-G solvation = -4165.510879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64241 -39.53144 -38.61752 -36.87149 -34.56725 -33.94101 -33.40981 -32.18196 -31.36486 -30.81260 -28.87753 -28.28558 -25.85565 -24.80880 -23.71587 -23.52741 -22.23960 -21.51639 -20.27378 -19.39239 -18.65210 -17.87795 -17.25575 -16.84340 -16.16843 -16.05515 -15.84447 -15.28050 -14.93279 -14.77166 -14.57031 -14.50330 -14.21703 -14.01204 -13.85427 -13.76557 -13.49576 -13.17469 -12.86535 -12.39884 -12.32803 -12.01082 -11.95133 -11.82108 -11.74179 -11.51116 -11.49059 -11.34291 -11.26404 -11.19253 -10.96595 -10.93792 -10.78843 -10.64480 -10.45064 -10.29717 -9.59060 -9.52440 -9.43460 -9.29050 -8.49125 -8.04591 -7.47133 -6.49710 -3.91112 2.83215 3.09511 3.11355 3.21510 3.27345 3.69438 3.77524 4.11207 4.20592 4.26741 4.39668 4.56284 4.63532 4.82255 4.88370 4.93757 5.02522 5.05626 5.14270 5.17332 5.25694 5.28116 5.41266 5.41855 5.44417 5.49879 5.51660 5.60641 5.65524 5.69663 5.71580 5.73823 5.84755 5.89147 5.95803 5.99557 6.05600 6.10326 6.17770 6.48793 6.63678 6.70449 6.97693 7.21500 7.34790 7.47165 7.60917 7.96555 8.38707 8.51067 9.08719 9.44459 9.94892 10.66726 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.002515 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.602714 B =11131.318449 C =12039.189164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 H 0.103 0.897 4 C 0.522 3.478 5 O -0.531 6.531 6 N -0.609 5.609 7 C 0.122 3.878 8 C 0.024 3.976 9 N -0.513 5.513 10 C 0.042 3.958 11 C 0.404 3.596 12 O -0.594 6.594 13 N -0.555 5.555 14 C -0.303 4.303 15 H 0.102 0.898 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.929 3.071 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.023 3.977 23 C 0.116 3.884 24 C 0.102 3.898 25 H 0.085 0.915 26 C -0.154 4.154 27 C -0.155 4.155 28 C 0.045 3.955 29 O -0.355 6.355 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.393 0.607 40 H 0.273 0.727 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 -6.053 -14.026 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 H 0.121 0.879 4 C 0.310 3.690 5 O -0.406 6.406 6 N -0.343 5.343 7 C -0.001 4.001 8 C -0.104 4.104 9 N -0.236 5.236 10 C -0.090 4.090 11 C 0.190 3.810 12 O -0.481 6.481 13 N -0.190 5.190 14 C -0.432 4.432 15 H 0.120 0.880 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.756 3.244 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.106 4.106 23 C -0.008 4.008 24 C 0.044 3.956 25 H 0.103 0.897 26 C -0.192 4.192 27 C -0.193 4.193 28 C -0.032 4.032 29 O -0.274 6.274 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.226 0.774 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.335 -7.051 -14.306 22.830 hybrid contribution 1.479 1.090 0.029 1.837 sum -14.857 -5.961 -14.277 21.450 Atomic orbital electron populations 1.21832 0.92587 1.03305 1.02513 1.21729 0.98335 1.00617 0.93767 0.87928 1.20378 0.79028 0.85580 0.84050 1.90702 1.41247 1.22760 1.85938 1.48088 1.61255 1.19100 1.05902 1.21751 0.98801 0.95297 0.84234 1.22778 0.97653 0.90040 0.99968 1.62446 1.45032 1.04869 1.11240 1.22054 0.92311 0.98134 0.96497 1.21089 0.87861 0.84637 0.87442 1.90425 1.79168 1.57844 1.20656 1.42054 1.12785 1.47846 1.16335 1.19705 0.88885 1.32958 1.01690 0.88002 1.25289 1.00293 0.96845 0.95351 1.69604 1.36977 1.38490 1.08756 0.85867 0.81184 0.78988 0.78330 1.20349 1.20810 1.19398 1.22676 1.00873 0.95935 0.91109 1.21898 0.96326 0.82637 0.99920 1.22470 0.98066 0.82865 0.92227 0.89674 1.23266 1.02685 0.98450 0.94793 1.23249 1.01749 0.96023 0.98279 1.23402 0.94976 0.99502 0.85338 1.88629 1.65640 1.31362 1.41727 0.91347 0.91632 0.91719 0.91600 0.89162 0.90071 0.90688 0.89224 0.89268 0.77364 0.91726 0.90163 0.90619 0.89908 0.91248 0.89979 0.89831 0.90373 0.90089 0.90046 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.37 37.16 0.31 -0.99 16 2 C -0.12 -1.40 1.70 -91.77 -0.16 -1.55 16 3 H 0.10 1.03 7.08 -51.93 -0.37 0.66 16 4 C 0.52 8.06 6.92 -10.99 -0.08 7.99 16 5 O -0.53 -10.23 14.87 -10.01 -0.15 -10.38 16 6 N -0.61 -8.87 3.00 -172.19 -0.52 -9.39 16 7 C 0.12 1.84 6.64 -3.37 -0.02 1.81 16 8 C 0.02 0.40 5.13 -3.46 -0.02 0.39 16 9 N -0.51 -8.13 4.83 -235.47 -1.14 -9.26 16 10 C 0.04 0.71 5.84 -4.98 -0.03 0.68 16 11 C 0.40 9.00 7.18 -10.98 -0.08 8.92 16 12 O -0.59 -14.94 11.25 5.55 0.06 -14.88 16 13 N -0.56 -13.61 5.29 -10.96 -0.06 -13.66 16 14 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 15 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 16 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 17 N -0.90 -23.99 13.05 55.50 0.72 -23.27 16 18 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.02 0.34 5.21 -3.70 -0.02 0.32 16 23 C 0.12 1.40 5.06 -3.60 -0.02 1.38 16 24 C 0.10 1.17 2.75 -26.01 -0.07 1.10 16 25 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 26 C -0.15 -1.21 6.37 -24.78 -0.16 -1.36 16 27 C -0.16 -1.10 7.16 -24.48 -0.18 -1.27 16 28 C 0.04 0.40 7.58 38.18 0.29 0.68 16 29 O -0.35 -4.66 9.20 -50.79 -0.47 -5.13 16 30 H 0.07 0.70 7.09 -51.93 -0.37 0.34 16 31 H 0.06 0.55 6.08 -51.93 -0.32 0.24 16 32 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 35 H 0.08 1.71 5.70 -51.93 -0.30 1.41 16 36 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 37 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.08 1.52 5.78 -51.93 -0.30 1.22 16 42 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 43 H 0.08 0.82 5.23 -51.93 -0.27 0.55 16 44 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 45 H 0.08 0.54 6.15 -51.93 -0.32 0.22 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 0.44 8.01 -51.93 -0.42 0.02 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -33.09 380.74 -9.11 -42.20 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -7.83 Total: 11.98 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -0.46 Total: 10.25 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.99 Total: -55.59 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.55 Total: -30.38 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.09 -9.11 -42.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113317952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.055 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds