Wall clock time and date at job start Sat Apr 11 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46465 * 2 1 4 4 C 1.50692 * 109.47106 * 119.99768 * 2 1 3 5 5 O 1.21286 * 120.00017 * 112.53054 * 4 2 1 6 6 N 1.34781 * 120.00376 * 292.25610 * 4 2 1 7 7 C 1.47074 * 120.88380 * 175.92800 * 6 4 2 8 8 C 1.53690 * 108.28120 * 128.75198 * 7 6 4 9 9 N 1.46902 * 109.25749 * 54.07778 * 8 7 6 10 10 C 1.46898 * 111.00456 * 172.60817 * 9 8 7 11 11 C 1.50703 * 109.46844 * 59.06598 * 10 9 8 12 12 O 1.21293 * 120.00098 * 5.90738 * 11 10 9 13 13 N 1.34777 * 120.00025 * 185.90029 * 11 10 9 14 14 C 1.37095 * 119.99657 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00422 * 0.02562 * 14 13 11 16 16 C 1.38953 * 119.99525 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00219 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99794 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47691 * 89.99634 * 18 16 14 20 20 H 1.48504 * 109.46942 * 209.99544 * 18 16 14 21 21 H 1.48504 * 109.47277 * 329.99345 * 18 16 14 22 22 C 1.46898 * 111.27177 * 296.76101 * 9 8 7 23 23 C 1.47083 * 120.87712 * 356.19830 * 6 4 2 24 24 C 1.52997 * 109.47078 * 239.99966 * 2 1 3 25 25 H 1.09000 * 109.82089 * 185.56558 * 24 2 1 26 26 C 1.54387 * 109.83149 * 64.58869 * 24 2 1 27 27 C 1.55307 * 102.24940 * 219.12836 * 26 24 2 28 28 C 1.54944 * 100.94613 * 34.13357 * 27 26 24 29 29 O 1.43236 * 109.83134 * 306.45566 * 24 2 1 30 30 H 1.09001 * 109.46810 * 173.66941 * 1 2 3 31 31 H 1.08998 * 109.47134 * 293.67025 * 1 2 3 32 32 H 1.08998 * 109.47313 * 53.67329 * 1 2 3 33 33 H 1.09003 * 109.62577 * 248.51960 * 7 6 4 34 34 H 1.09003 * 109.63029 * 9.09504 * 7 6 4 35 35 H 1.09004 * 109.64693 * 294.08158 * 8 7 6 36 36 H 1.09001 * 109.42406 * 173.94308 * 8 7 6 37 37 H 1.08995 * 109.47287 * 179.06760 * 10 9 8 38 38 H 1.08998 * 109.47273 * 299.07195 * 10 9 8 39 39 H 0.96993 * 119.99947 * 0.02562 * 13 11 10 40 40 H 0.97001 * 120.00219 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.49408 * 303.14448 * 22 9 8 42 42 H 1.08997 * 109.49511 * 183.06231 * 22 9 8 43 43 H 1.08999 * 109.62967 * 350.89841 * 23 6 4 44 44 H 1.08996 * 109.62597 * 111.28508 * 23 6 4 45 45 H 1.09002 * 110.84426 * 337.31356 * 26 24 2 46 46 H 1.08991 * 110.84865 * 100.93911 * 26 24 2 47 47 H 1.08996 * 111.12665 * 276.20874 * 27 26 24 48 48 H 1.09003 * 111.12401 * 152.05253 * 27 26 24 49 49 H 1.08995 * 110.31122 * 204.63778 * 28 27 26 50 50 H 1.09002 * 110.39403 * 82.50973 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.6140 -1.7693 1.1243 6 7 1.8402 -0.1662 2.4484 7 6 2.2427 -0.8834 3.6677 8 6 3.1017 0.0623 4.5221 9 7 2.3642 1.3119 4.7519 10 6 3.0732 2.1735 5.7073 11 6 4.4461 2.4920 5.1736 12 8 4.7607 2.1357 4.0577 13 7 5.3244 3.1728 5.9362 14 6 6.5731 3.4629 5.4504 15 1 6.8530 3.1463 4.4566 16 6 7.4788 4.1644 6.2369 17 7 7.1382 4.5501 7.4460 18 14 9.1801 4.5603 5.5747 19 1 9.1478 5.8720 4.8792 20 1 10.1475 4.6204 6.6998 21 1 9.5976 3.5034 4.6188 22 6 2.1112 2.0211 3.4906 23 6 1.2172 1.1582 2.5937 24 6 2.0401 -0.7212 -1.2492 25 1 3.1255 -0.8115 -1.2066 26 6 1.6271 0.0640 -2.5127 27 6 1.2541 -1.0744 -3.5010 28 6 0.6557 -2.1229 -2.5297 29 8 1.4472 -2.0223 -1.3352 30 1 -0.3633 -1.0214 -0.1133 31 1 -0.3633 0.4126 0.9412 32 1 -0.3634 0.6088 -0.8279 33 1 1.3556 -1.1823 4.2263 34 1 2.8238 -1.7655 3.3988 35 1 4.0342 0.2809 4.0017 36 1 3.3209 -0.4119 5.4787 37 1 2.5140 3.0986 5.8466 38 1 3.1657 1.6574 6.6629 39 1 5.0730 3.4575 6.8287 40 1 7.7703 5.0401 7.9948 41 1 3.0575 2.2123 2.9847 42 1 1.6121 2.9674 3.6992 43 1 1.1201 1.6267 1.6143 44 1 0.2321 1.0515 3.0479 45 1 0.7650 0.6996 -2.3098 46 1 2.4621 0.6512 -2.8947 47 1 2.1393 -1.4644 -4.0032 48 1 0.5103 -0.7391 -4.2239 49 1 0.7380 -3.1231 -2.9550 50 1 -0.3868 -1.8890 -2.3135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113317952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:42 Heat of formation + Delta-G solvation = -126.795560 kcal Electronic energy + Delta-G solvation = -30953.749388 eV Core-core repulsion = 26787.174429 eV Total energy + Delta-G solvation = -4166.574959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72167 -40.81133 -39.91206 -38.32751 -36.16068 -35.40618 -34.54334 -33.33581 -32.89358 -31.98207 -30.16510 -29.12835 -27.42601 -26.00810 -25.06696 -24.68671 -23.07092 -22.43413 -21.46064 -21.00516 -20.06262 -19.57967 -18.25607 -17.85004 -17.71171 -17.18840 -16.77461 -16.58522 -16.40371 -16.17097 -16.06721 -15.71549 -15.45363 -15.38427 -15.18754 -14.91105 -14.77976 -14.16102 -14.02515 -13.60799 -13.45765 -13.19605 -13.12546 -13.02067 -12.90305 -12.67834 -12.63735 -12.47628 -12.45453 -12.26298 -12.18564 -12.10407 -12.05827 -11.99036 -11.92779 -11.57473 -11.40659 -11.00211 -10.62500 -10.41907 -10.02013 -9.73390 -9.02796 -8.49285 -5.98964 1.32757 1.37662 1.49584 1.66269 1.98792 2.00241 2.25919 2.90484 2.99447 3.16785 3.24387 3.46555 3.57776 3.73350 3.95024 3.98142 4.03512 4.05989 4.14626 4.20233 4.32443 4.34215 4.39124 4.40363 4.50212 4.59299 4.59696 4.67197 4.69261 4.73075 4.78495 4.82662 4.84079 4.92272 4.95016 5.01003 5.08632 5.11057 5.21007 5.27637 5.38583 5.39324 5.50399 5.81247 5.98707 6.01661 6.21606 6.46399 6.56106 7.09097 7.21166 7.52708 8.08185 8.65971 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.002515 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.602714 B =11131.318449 C =12039.189164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 H 0.119 0.881 4 C 0.510 3.490 5 O -0.581 6.581 6 N -0.613 5.613 7 C 0.126 3.874 8 C 0.031 3.969 9 N -0.497 5.497 10 C 0.051 3.949 11 C 0.406 3.594 12 O -0.624 6.624 13 N -0.569 5.569 14 C -0.333 4.333 15 H 0.074 0.926 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 0.988 3.012 19 H -0.269 1.269 20 H -0.270 1.270 21 H -0.277 1.277 22 C 0.021 3.979 23 C 0.119 3.881 24 C 0.095 3.905 25 H 0.049 0.951 26 C -0.146 4.146 27 C -0.148 4.148 28 C 0.035 3.965 29 O -0.391 6.391 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.036 0.964 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.108 0.892 49 H 0.083 0.917 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.204 -4.583 -14.652 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 H 0.136 0.864 4 C 0.300 3.700 5 O -0.461 6.461 6 N -0.346 5.346 7 C 0.003 3.997 8 C -0.098 4.098 9 N -0.219 5.219 10 C -0.081 4.081 11 C 0.193 3.807 12 O -0.512 6.512 13 N -0.206 5.206 14 C -0.463 4.463 15 H 0.092 0.908 16 C -0.211 4.211 17 N -0.557 5.557 18 Si 0.812 3.188 19 H -0.194 1.194 20 H -0.195 1.195 21 H -0.203 1.203 22 C -0.108 4.108 23 C -0.003 4.003 24 C 0.037 3.963 25 H 0.067 0.933 26 C -0.183 4.183 27 C -0.186 4.186 28 C -0.041 4.041 29 O -0.311 6.311 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.127 0.873 49 H 0.101 0.899 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.031 -5.557 -14.923 24.814 hybrid contribution 2.276 0.552 0.203 2.351 sum -16.755 -5.005 -14.720 22.857 Atomic orbital electron populations 1.21822 0.90077 1.03143 1.04361 1.21798 1.00217 1.00506 0.91366 0.86366 1.21253 0.78141 0.85252 0.85335 1.90671 1.43499 1.25205 1.86709 1.48271 1.60886 1.19934 1.05514 1.21638 0.99147 0.94236 0.84648 1.22636 0.96023 0.91096 1.00048 1.62553 1.43420 1.04271 1.11656 1.22177 0.88900 0.99851 0.97176 1.22223 0.89385 0.82449 0.86645 1.90447 1.80294 1.58239 1.22216 1.42120 1.12540 1.49124 1.16803 1.19586 0.90854 1.34659 1.01169 0.90794 1.25987 1.03255 0.96281 0.95551 1.69655 1.38094 1.38684 1.09283 0.84997 0.77253 0.78612 0.77900 1.19447 1.19463 1.20256 1.22741 0.99678 0.97722 0.90641 1.22099 0.96365 0.80808 1.01012 1.22480 0.96236 0.83289 0.94291 0.93258 1.23263 1.03747 0.98461 0.92824 1.23245 1.02179 0.95010 0.98129 1.23630 0.95373 1.00423 0.84633 1.88596 1.66367 1.32399 1.43689 0.92838 0.90627 0.88610 0.89095 0.91260 0.94987 0.89840 0.86306 0.87272 0.76928 0.91233 0.94548 0.88143 0.87287 0.88356 0.87736 0.89135 0.90901 0.87321 0.89907 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.37 71.98 0.60 -1.44 16 2 C -0.12 -2.55 1.70 -11.54 -0.02 -2.57 16 3 H 0.12 2.15 7.08 -2.38 -0.02 2.13 16 4 C 0.51 16.03 6.92 87.65 0.61 16.64 16 5 O -0.58 -23.80 14.87 11.83 0.18 -23.62 16 6 N -0.61 -17.50 3.00 -817.06 -2.45 -19.95 16 7 C 0.13 3.82 6.64 86.50 0.57 4.40 16 8 C 0.03 1.05 5.13 86.54 0.44 1.49 16 9 N -0.50 -14.93 4.83 -898.89 -4.34 -19.27 16 10 C 0.05 1.62 5.84 85.56 0.50 2.12 16 11 C 0.41 18.33 7.18 87.66 0.63 18.96 16 12 O -0.62 -32.69 11.25 -3.07 -0.03 -32.73 16 13 N -0.57 -28.45 5.29 -306.98 -1.62 -30.08 16 14 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 15 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 16 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 17 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 18 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 C 0.02 0.59 5.21 86.38 0.45 1.04 16 23 C 0.12 2.56 5.06 86.35 0.44 3.00 16 24 C 0.10 2.20 2.75 31.06 0.09 2.29 16 25 H 0.05 1.44 8.06 -2.39 -0.02 1.42 16 26 C -0.15 -1.97 6.37 31.86 0.20 -1.76 16 27 C -0.15 -1.78 7.16 32.05 0.23 -1.55 16 28 C 0.04 0.59 7.58 72.65 0.55 1.14 16 29 O -0.39 -10.46 9.20 -134.10 -1.23 -11.70 16 30 H 0.05 0.99 7.09 -2.39 -0.02 0.97 16 31 H 0.07 0.98 6.08 -2.39 -0.01 0.96 16 32 H 0.10 0.85 6.54 -2.39 -0.02 0.83 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.38 7.04 -2.39 -0.02 2.37 16 35 H 0.03 1.42 5.70 -2.38 -0.01 1.41 16 36 H 0.08 2.62 8.11 -2.39 -0.02 2.61 16 37 H 0.12 3.21 8.06 -2.39 -0.02 3.19 16 38 H 0.11 3.13 8.14 -2.39 -0.02 3.12 16 39 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 40 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.04 1.39 5.78 -2.39 -0.01 1.37 16 42 H 0.10 2.35 8.05 -2.39 -0.02 2.33 16 43 H 0.11 1.78 5.23 -2.39 -0.01 1.77 16 44 H 0.10 1.65 8.10 -2.39 -0.02 1.63 16 45 H 0.10 0.94 6.15 -2.39 -0.01 0.93 16 46 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.07 0.96 8.01 -2.39 -0.02 0.94 16 Total: -1.00 -77.45 380.74 -0.39 -77.85 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.23 Total: 37.36 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.57 Total: 25.76 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -8.13 Total: -117.97 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: -1.09 Total: -68.04 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -77.45 -0.39 -77.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113317952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.946 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds