Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47210 * 2 1 4 4 C 1.50703 * 109.46860 * 240.00671 * 2 1 3 5 5 O 1.21276 * 120.00021 * 264.51083 * 4 2 1 6 6 N 1.34781 * 120.00025 * 84.51173 * 4 2 1 7 7 C 1.47080 * 120.88234 * 354.61520 * 6 4 2 8 8 C 1.53696 * 108.27715 * 128.75113 * 7 6 4 9 9 N 1.46897 * 109.25744 * 54.08463 * 8 7 6 10 10 C 1.46892 * 111.00210 * 172.60804 * 9 8 7 11 11 C 1.50704 * 109.47251 * 59.34541 * 10 9 8 12 12 O 1.21285 * 119.99909 * 5.62583 * 11 10 9 13 13 N 1.34773 * 119.99867 * 185.62396 * 11 10 9 14 14 C 1.37093 * 119.99987 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00335 * 359.97438 * 14 13 11 16 16 C 1.38955 * 120.00512 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99502 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00408 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47136 * 89.99204 * 18 16 14 20 20 H 1.48493 * 109.47134 * 209.99938 * 18 16 14 21 21 H 1.48502 * 109.46740 * 329.99703 * 18 16 14 22 22 C 1.46904 * 111.26675 * 296.75433 * 9 8 7 23 23 C 1.47082 * 120.87951 * 174.89084 * 6 4 2 24 24 C 1.52994 * 109.47207 * 120.00790 * 2 1 3 25 25 H 1.08998 * 109.82671 * 60.56506 * 24 2 1 26 26 C 1.54383 * 109.82971 * 299.58492 * 24 2 1 27 27 C 1.55303 * 102.25294 * 219.13506 * 26 24 2 28 28 C 1.54948 * 100.94280 * 34.13278 * 27 26 24 29 29 O 1.43239 * 109.82579 * 181.45308 * 24 2 1 30 30 H 1.09003 * 109.46989 * 184.64783 * 1 2 3 31 31 H 1.08994 * 109.46687 * 304.64078 * 1 2 3 32 32 H 1.09000 * 109.47381 * 64.64700 * 1 2 3 33 33 H 1.09001 * 109.62272 * 248.52144 * 7 6 4 34 34 H 1.09001 * 109.62863 * 9.09395 * 7 6 4 35 35 H 1.08997 * 109.64716 * 294.08076 * 8 7 6 36 36 H 1.09004 * 109.41737 * 173.94720 * 8 7 6 37 37 H 1.09005 * 109.47352 * 179.34977 * 10 9 8 38 38 H 1.09005 * 109.47273 * 299.34670 * 10 9 8 39 39 H 0.96997 * 120.00553 * 359.97438 * 13 11 10 40 40 H 0.97004 * 119.99927 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.49327 * 303.14759 * 22 9 8 42 42 H 1.09005 * 109.49160 * 183.06423 * 22 9 8 43 43 H 1.08998 * 109.62745 * 350.89200 * 23 6 4 44 44 H 1.08992 * 109.62945 * 111.48271 * 23 6 4 45 45 H 1.09003 * 110.84592 * 337.32131 * 26 24 2 46 46 H 1.08994 * 110.84500 * 100.94356 * 26 24 2 47 47 H 1.09002 * 111.12344 * 276.21367 * 27 26 24 48 48 H 1.08998 * 111.16467 * 152.07205 * 27 26 24 49 49 H 1.09006 * 110.30742 * 204.64079 * 28 27 26 50 50 H 1.09000 * 110.39511 * 82.51926 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3291 -1.8848 -1.1741 6 7 2.1517 -0.0402 -2.3939 7 6 1.6880 1.3503 -2.5152 8 6 2.8303 2.1892 -3.1098 9 7 3.2809 1.5736 -4.3651 10 6 4.2498 2.4350 -5.0557 11 6 5.4407 2.6685 -4.1622 12 8 5.5265 2.0864 -3.1016 13 7 6.4103 3.5243 -4.5416 14 6 7.4939 3.7364 -3.7290 15 1 7.5704 3.2181 -2.7846 16 6 8.4934 4.6190 -4.1198 17 7 8.4001 5.2501 -5.2687 18 14 9.9695 4.9085 -3.0122 19 1 11.0399 3.9363 -3.3498 20 1 10.4748 6.2905 -3.2120 21 1 9.5669 4.7289 -1.5941 22 6 3.8391 0.2350 -4.1319 23 6 2.7436 -0.6821 -3.5775 24 6 2.0400 -0.7214 1.2491 25 1 1.6882 -1.7530 1.2498 26 6 1.5386 0.0058 2.5152 27 6 2.7719 -0.0806 3.4551 28 6 3.9301 0.0215 2.4308 29 8 3.4720 -0.6963 1.2740 30 1 -0.3633 -1.0243 0.0833 31 1 -0.3632 0.5841 0.8455 32 1 -0.3634 0.4400 -0.9287 33 1 0.8195 1.3905 -3.1726 34 1 1.4233 1.7352 -1.5304 35 1 3.6611 2.2286 -2.4053 36 1 2.4726 3.1996 -3.3080 37 1 4.5757 1.9502 -5.9761 38 1 3.7817 3.3901 -5.2943 39 1 6.3419 3.9896 -5.3899 40 1 9.0980 5.8660 -5.5418 41 1 4.6558 0.3016 -3.4131 42 1 4.2131 -0.1719 -5.0714 43 1 3.1774 -1.6414 -3.2953 44 1 1.9747 -0.8334 -4.3350 45 1 1.2915 1.0441 2.2940 46 1 0.6839 -0.5138 2.9481 47 1 2.7974 -1.0338 3.9832 48 1 2.7922 0.7543 4.1556 49 1 4.8315 -0.4423 2.8315 50 1 4.1224 1.0641 2.1776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113317954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -104.910294 kcal Electronic energy + Delta-G solvation = -31266.309307 eV Core-core repulsion = 27100.683364 eV Total energy + Delta-G solvation = -4165.625943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.55334 -39.45248 -38.60840 -36.88478 -34.53060 -34.09189 -33.51122 -32.09467 -31.35032 -30.82806 -28.80022 -28.09257 -25.83247 -24.77480 -23.73048 -23.45741 -22.18764 -21.49222 -20.32598 -19.38092 -18.67894 -17.90843 -17.39831 -16.64051 -16.17599 -16.03578 -15.79789 -15.23908 -14.91421 -14.74050 -14.54035 -14.45965 -14.18624 -13.94039 -13.68578 -13.62995 -13.50959 -13.16089 -12.93959 -12.58554 -12.37423 -12.13301 -11.83022 -11.80888 -11.69236 -11.52363 -11.43954 -11.31164 -11.24727 -11.19534 -11.00964 -10.91449 -10.76648 -10.63868 -10.43921 -10.28390 -9.53368 -9.50950 -9.44455 -9.27234 -8.49363 -8.03015 -7.45452 -6.48476 -3.89732 2.81733 3.11757 3.12504 3.22237 3.27805 3.74069 3.79303 4.12286 4.24794 4.29154 4.39354 4.56991 4.69678 4.90200 4.93454 4.96736 5.06297 5.09718 5.15459 5.22480 5.27839 5.31273 5.36276 5.45366 5.47587 5.52565 5.57852 5.59953 5.67896 5.70272 5.72454 5.79794 5.84943 5.89326 5.96407 6.00421 6.05347 6.09694 6.19662 6.51416 6.64661 6.71883 7.03437 7.22780 7.35984 7.48515 7.61143 7.98087 8.37348 8.52749 9.10265 9.46014 9.96743 10.68050 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003204 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.749993 B = 8736.564878 C =10422.853963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 H 0.097 0.903 4 C 0.530 3.470 5 O -0.541 6.541 6 N -0.608 5.608 7 C 0.115 3.885 8 C 0.022 3.978 9 N -0.512 5.512 10 C 0.042 3.958 11 C 0.404 3.596 12 O -0.592 6.592 13 N -0.556 5.556 14 C -0.302 4.302 15 H 0.102 0.898 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.929 3.071 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.025 3.975 23 C 0.123 3.877 24 C 0.100 3.900 25 H 0.089 0.911 26 C -0.150 4.150 27 C -0.156 4.156 28 C 0.046 3.954 29 O -0.365 6.365 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.393 0.607 40 H 0.273 0.727 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.042 -5.990 9.447 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 H 0.115 0.885 4 C 0.318 3.682 5 O -0.418 6.418 6 N -0.341 5.341 7 C -0.009 4.009 8 C -0.107 4.107 9 N -0.236 5.236 10 C -0.090 4.090 11 C 0.190 3.810 12 O -0.479 6.479 13 N -0.191 5.191 14 C -0.432 4.432 15 H 0.120 0.880 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.756 3.244 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.104 4.104 23 C 0.000 4.000 24 C 0.041 3.959 25 H 0.106 0.894 26 C -0.187 4.187 27 C -0.194 4.194 28 C -0.031 4.031 29 O -0.284 6.284 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.973 -7.011 9.621 20.731 hybrid contribution 1.461 1.008 0.433 1.827 sum -15.512 -6.003 10.053 19.435 Atomic orbital electron populations 1.21726 0.92084 1.03097 1.02916 1.21754 0.97585 1.01319 0.93965 0.88489 1.20291 0.77293 0.86894 0.83746 1.90654 1.50276 1.16133 1.84697 1.48080 1.61135 1.13874 1.11056 1.21978 0.97043 0.80862 1.00992 1.22773 0.98220 0.96791 0.92918 1.62450 1.36266 1.02533 1.22312 1.22059 0.91315 0.98428 0.97229 1.21091 0.86258 0.84452 0.89219 1.90440 1.79538 1.52446 1.25433 1.42049 1.18730 1.37862 1.20453 1.19712 0.97329 1.23439 1.02729 0.88004 1.25282 0.99409 0.96282 0.96786 1.69609 1.35238 1.28330 1.20729 0.85869 0.80838 0.77524 0.80154 1.20321 1.20835 1.19430 1.22686 0.97267 0.88727 1.01717 1.21657 0.95667 0.96602 0.86080 1.22561 0.81717 0.99445 0.92135 0.89364 1.23208 0.98774 1.01701 0.95048 1.23271 0.94694 1.03067 0.98342 1.23417 0.97264 0.97105 0.85279 1.88605 1.19400 1.75448 1.44908 0.91714 0.91211 0.91597 0.91119 0.89909 0.90015 0.90671 0.89198 0.89297 0.77387 0.91751 0.90088 0.90656 0.89251 0.91644 0.90208 0.89871 0.90405 0.89932 0.89774 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.65 37.16 0.32 -0.85 16 2 C -0.12 -1.48 1.51 -91.77 -0.14 -1.62 16 3 H 0.10 1.13 6.51 -51.93 -0.34 0.79 16 4 C 0.53 8.35 6.53 -10.98 -0.07 8.27 16 5 O -0.54 -10.37 15.49 5.55 0.09 -10.29 16 6 N -0.61 -9.09 3.00 -172.18 -0.52 -9.61 16 7 C 0.11 1.44 5.96 -3.36 -0.02 1.42 16 8 C 0.02 0.34 5.13 -3.46 -0.02 0.32 16 9 N -0.51 -8.26 4.83 -235.46 -1.14 -9.40 16 10 C 0.04 0.71 5.84 -4.98 -0.03 0.68 16 11 C 0.40 9.10 7.18 -10.99 -0.08 9.02 16 12 O -0.59 -15.12 11.25 5.55 0.06 -15.06 16 13 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 14 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 16 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 17 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 18 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.02 0.41 5.21 -3.70 -0.02 0.39 16 23 C 0.12 1.87 6.58 -3.60 -0.02 1.85 16 24 C 0.10 1.21 2.64 -26.01 -0.07 1.14 16 25 H 0.09 1.15 7.86 -51.93 -0.41 0.74 16 26 C -0.15 -1.24 5.55 -24.79 -0.14 -1.38 16 27 C -0.16 -1.31 7.16 -24.48 -0.18 -1.49 16 28 C 0.05 0.54 7.78 38.19 0.30 0.83 16 29 O -0.36 -5.67 10.62 -35.24 -0.37 -6.04 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.43 7.22 -51.93 -0.37 0.06 16 32 H 0.07 0.52 7.39 -51.93 -0.38 0.13 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.87 5.25 -51.93 -0.27 0.60 16 35 H 0.08 1.62 5.71 -51.93 -0.30 1.33 16 36 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 37 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.08 1.72 5.76 -51.93 -0.30 1.43 16 42 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 43 H 0.09 1.46 7.10 -51.93 -0.37 1.09 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.08 0.59 7.56 -51.93 -0.39 0.19 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -33.56 386.50 -8.84 -42.41 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -8.03 Total: 12.72 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.40 Total: 10.71 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.99 Total: -56.14 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.23 Total: -31.39 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.56 -8.84 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113317954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.504 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds