Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47122 * 2 1 4 4 C 1.53001 * 109.47109 * 240.00433 * 2 1 3 5 5 N 1.46502 * 109.46972 * 294.38558 * 4 2 1 6 6 C 1.34775 * 119.99992 * 174.96292 * 5 4 2 7 7 O 1.21344 * 119.99794 * 0.02562 * 6 5 4 8 8 C 1.49451 * 119.99712 * 179.97438 * 6 5 4 9 9 O 1.21344 * 120.00493 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99712 * 179.97438 * 8 6 5 11 11 C 1.47432 * 125.64882 * 359.69089 * 10 8 6 12 12 C 1.55135 * 104.72019 * 155.81854 * 11 10 8 13 13 C 1.55158 * 101.48779 * 37.29699 * 12 11 10 14 14 O 1.42897 * 110.71852 * 82.69293 * 13 12 11 15 15 C 1.50689 * 110.87218 * 205.89891 * 13 12 11 16 16 H 1.08000 * 120.00026 * 355.06058 * 15 13 12 17 17 C 1.37882 * 120.00337 * 175.06548 * 15 13 12 18 18 N 1.31518 * 119.99450 * 359.97438 * 17 15 13 19 19 Si 1.86789 * 120.00524 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47267 * 119.99852 * 19 17 15 22 22 H 1.48499 * 109.47388 * 239.99984 * 19 17 15 23 23 C 1.47023 * 125.65174 * 180.02562 * 10 8 6 24 24 N 1.46899 * 109.47272 * 120.00268 * 2 1 3 25 25 C 1.46900 * 111.00077 * 171.94433 * 24 2 1 26 26 C 1.46899 * 110.99811 * 295.89437 * 24 2 1 27 27 C 1.52999 * 117.50061 * 243.74849 * 26 24 2 28 28 C 1.52998 * 117.49911 * 175.08829 * 26 24 2 29 29 H 1.09001 * 109.46636 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46861 * 299.99504 * 1 2 3 31 31 H 1.08996 * 109.47091 * 60.00097 * 1 2 3 32 32 H 1.09001 * 109.46955 * 174.38745 * 4 2 1 33 33 H 1.08995 * 109.47388 * 54.38124 * 4 2 1 34 34 H 0.97007 * 119.99845 * 354.96016 * 5 4 2 35 35 H 1.08995 * 110.36648 * 274.74997 * 11 10 8 36 36 H 1.08997 * 110.36297 * 37.07295 * 11 10 8 37 37 H 1.09002 * 111.19159 * 279.18983 * 12 11 10 38 38 H 1.08995 * 110.90292 * 155.28023 * 12 11 10 39 39 H 0.96699 * 114.00207 * 185.02548 * 14 13 12 40 40 H 0.96996 * 120.00017 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.88471 * 300.44487 * 23 10 8 42 42 H 1.09009 * 109.87923 * 61.44800 * 23 10 8 43 43 H 1.09000 * 109.47039 * 54.46075 * 25 24 2 44 44 H 1.09001 * 109.47046 * 174.46181 * 25 24 2 45 45 H 1.09000 * 109.46785 * 294.46475 * 25 24 2 46 46 H 1.09002 * 115.55023 * 29.41670 * 26 24 2 47 47 H 1.09005 * 117.49876 * 359.97438 * 27 26 24 48 48 H 1.09002 * 117.50426 * 145.02146 * 27 26 24 49 49 H 1.09001 * 117.50039 * 214.98175 * 28 26 24 50 50 H 1.08999 * 117.49993 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6651 -2.1359 -1.1837 6 6 1.9209 -2.9499 -2.2270 7 8 2.4622 -2.5110 -3.2204 8 6 1.5390 -4.3932 -2.1598 9 8 0.9981 -4.8321 -1.1662 10 7 1.7943 -5.2070 -3.2033 11 6 2.4359 -4.8062 -4.4687 12 6 3.0506 -6.1150 -5.0309 13 6 1.9711 -7.1575 -4.6369 14 8 0.9074 -7.1691 -5.5911 15 6 2.5760 -8.5307 -4.4989 16 1 3.6146 -8.6908 -4.7480 17 6 1.8035 -9.5829 -4.0547 18 7 0.5389 -9.3879 -3.7509 19 14 2.5531 -11.2853 -3.8842 20 1 3.9822 -11.2394 -4.2856 21 1 2.4504 -11.7323 -2.4718 22 1 1.8231 -12.2376 -4.7591 23 6 1.4730 -6.6401 -3.2710 24 7 2.0197 -0.6925 1.1994 25 6 3.4754 -0.8808 1.1411 26 6 1.6305 0.0279 2.4190 27 6 2.7510 0.6011 3.2889 28 6 1.9651 -0.6243 3.7619 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1254 -0.6349 -1.3010 33 1 1.5969 -0.2687 -2.1364 34 1 1.2328 -2.4868 -0.3894 35 1 1.6943 -4.4053 -5.1596 36 1 3.2178 -4.0704 -4.2811 37 1 4.0039 -6.3398 -4.5525 38 1 3.1624 -6.0584 -6.1136 39 1 0.1705 -7.7477 -5.3517 40 1 -0.0047 -10.1281 -3.4388 41 1 1.9799 -7.1722 -2.4660 42 1 0.3954 -6.7827 -3.1883 43 1 3.9599 0.0814 0.9754 44 1 3.8247 -1.3062 2.0819 45 1 3.7218 -1.5573 0.3227 46 1 0.7033 0.5972 2.3531 47 1 3.7771 0.4433 2.9565 48 1 2.5609 1.5472 3.7957 49 1 1.2582 -0.4839 4.5797 50 1 2.4744 -1.5878 3.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118217680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -91.489841 kcal Electronic energy + Delta-G solvation = -30602.882953 eV Core-core repulsion = 26437.838965 eV Total energy + Delta-G solvation = -4165.043988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.84809 -40.51885 -39.72040 -38.88082 -37.11063 -36.10259 -34.27683 -34.23698 -31.86421 -31.70264 -29.74264 -28.69187 -27.40831 -26.42768 -25.21168 -23.51971 -23.20700 -22.30285 -21.55049 -20.96147 -20.36725 -19.12650 -18.76700 -18.16502 -17.78613 -17.38343 -16.99685 -16.78527 -16.37088 -16.24396 -15.88991 -15.40541 -15.31146 -15.04051 -14.80681 -14.75483 -14.63846 -14.24079 -13.99983 -13.59985 -13.52333 -13.43613 -13.36849 -13.04453 -12.88242 -12.65417 -12.57954 -12.50401 -12.45518 -12.35962 -12.24544 -12.14885 -12.05281 -12.01252 -11.54268 -11.19134 -11.18569 -10.74881 -10.51980 -10.28911 -10.26175 -9.72591 -9.12300 -8.26958 -6.42532 0.36580 1.29848 1.41770 1.44683 1.55290 2.14289 2.37157 2.50202 2.69039 2.99530 3.07704 3.38884 3.61276 3.79232 3.89171 4.00420 4.04095 4.09657 4.12158 4.16084 4.26203 4.32173 4.36565 4.52459 4.57096 4.61438 4.70925 4.73339 4.77378 4.82947 4.89304 4.95167 4.96641 5.05115 5.08679 5.11133 5.13639 5.25072 5.26337 5.31708 5.35046 5.45057 5.72757 6.00082 6.01472 6.08264 6.11970 6.39488 6.63076 6.70060 6.95654 7.26856 7.34723 8.79653 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002448 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.707055 B =11433.589476 C =12137.882868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.082 0.918 4 C 0.121 3.879 5 N -0.675 5.675 6 C 0.517 3.483 7 O -0.532 6.532 8 C 0.500 3.500 9 O -0.561 6.561 10 N -0.585 5.585 11 C 0.110 3.890 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.587 6.587 15 C -0.555 4.555 16 H 0.068 0.932 17 C 0.026 3.974 18 N -0.914 5.914 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.278 1.278 23 C 0.118 3.882 24 N -0.521 5.521 25 C 0.018 3.982 26 C 0.015 3.985 27 C -0.210 4.210 28 C -0.179 4.179 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.420 0.580 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.132 0.868 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 22.280 10.749 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 H 0.100 0.900 4 C -0.002 4.002 5 N -0.329 5.329 6 C 0.297 3.703 7 O -0.410 6.410 8 C 0.283 3.717 9 O -0.441 6.441 10 N -0.318 5.318 11 C -0.012 4.012 12 C -0.152 4.152 13 C 0.193 3.807 14 O -0.395 6.395 15 C -0.593 4.593 16 H 0.086 0.914 17 C -0.175 4.175 18 N -0.554 5.554 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.203 1.203 23 C -0.004 4.004 24 N -0.244 5.244 25 C -0.130 4.130 26 C -0.094 4.094 27 C -0.249 4.249 28 C -0.217 4.217 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.258 0.742 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.150 0.850 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.171 22.307 10.364 24.801 hybrid contribution -0.183 -1.260 0.922 1.572 sum 2.988 21.048 11.286 24.069 Atomic orbital electron populations 1.21907 0.92984 1.02412 1.03124 1.21928 0.96869 0.96493 0.87802 0.89999 1.21777 1.00809 0.78758 0.98869 1.45659 1.59431 1.09912 1.17877 1.19688 0.80190 0.86161 0.84242 1.90681 1.42398 1.76241 1.31677 1.20344 0.80704 0.87878 0.82735 1.90708 1.44138 1.77337 1.31928 1.48741 1.56413 1.10660 1.15937 1.22681 0.97498 0.97596 0.83421 1.22859 0.97685 0.92680 1.01991 1.19719 0.84815 0.93154 0.82984 1.86117 1.33016 1.70146 1.50181 1.21817 0.97904 0.93872 1.45742 0.91423 1.25812 0.95312 1.03029 0.93321 1.69800 1.07226 1.33615 1.44719 0.85401 0.78911 0.79155 0.77542 1.18991 1.20845 1.20340 1.22738 0.98972 0.77346 1.01358 1.61841 1.13179 1.48121 1.01262 1.22513 0.87145 1.00740 1.02592 1.22777 0.99525 1.00157 0.86903 1.23598 0.97787 0.98367 1.05147 1.23099 1.03889 0.97126 0.97539 0.93205 0.90859 0.90796 0.90711 0.89520 0.74181 0.91336 0.87696 0.89631 0.89093 0.77466 0.91995 0.93656 0.93878 0.93679 0.91161 0.92152 0.85027 0.88417 0.87746 0.87611 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.04 71.98 0.65 -1.24 16 2 C 0.08 1.02 2.33 44.92 0.10 1.13 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.12 2.14 4.53 86.38 0.39 2.53 16 5 N -0.68 -16.83 4.80 -464.41 -2.23 -19.06 16 6 C 0.52 16.86 7.86 87.27 0.69 17.55 16 7 O -0.53 -18.10 13.77 -3.23 -0.04 -18.14 16 8 C 0.50 20.34 7.91 87.27 0.69 21.03 16 9 O -0.56 -25.40 16.80 -3.23 -0.05 -25.45 16 10 N -0.59 -25.28 3.32 -812.90 -2.70 -27.98 16 11 C 0.11 4.19 6.07 86.93 0.53 4.71 16 12 C -0.11 -4.65 6.24 32.07 0.20 -4.45 16 13 C 0.23 11.51 0.85 -10.35 -0.01 11.50 16 14 O -0.59 -30.04 13.07 -148.98 -1.95 -31.98 16 15 C -0.56 -29.22 8.13 25.60 0.21 -29.01 16 16 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 17 C 0.03 1.38 5.28 84.66 0.45 1.82 16 18 N -0.91 -49.37 10.96 21.45 0.24 -49.14 16 19 Si 0.96 41.99 29.54 68.60 2.03 44.01 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 C 0.12 5.92 5.23 86.73 0.45 6.37 16 24 N -0.52 -8.00 4.18 -871.80 -3.65 -11.65 16 25 C 0.02 0.27 7.44 127.69 0.95 1.22 16 26 C 0.02 0.19 5.81 44.91 0.26 0.46 16 27 C -0.21 -2.34 9.53 30.62 0.29 -2.05 16 28 C -0.18 -2.39 9.97 30.62 0.31 -2.09 16 29 H 0.05 0.86 7.34 -2.39 -0.02 0.84 16 30 H 0.07 0.75 6.31 -2.39 -0.02 0.74 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.31 6.79 -2.39 -0.02 1.30 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.42 10.88 6.90 -92.70 -0.64 10.24 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.11 3.66 6.14 -2.39 -0.01 3.65 16 37 H 0.09 3.31 8.04 -2.39 -0.02 3.29 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.38 19.84 7.45 -74.06 -0.55 19.29 16 40 H 0.27 13.95 8.31 -92.71 -0.77 13.17 16 41 H 0.04 2.46 7.81 -2.39 -0.02 2.44 16 42 H 0.04 2.35 7.92 -2.38 -0.02 2.33 16 43 H 0.04 0.56 7.58 -2.39 -0.02 0.55 16 44 H 0.07 1.08 6.24 -2.39 -0.01 1.07 16 45 H 0.06 1.11 6.46 -2.39 -0.02 1.10 16 46 H 0.13 1.38 6.22 -2.39 -0.01 1.37 16 47 H 0.10 1.12 5.92 -2.38 -0.01 1.11 16 48 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.08 1.36 7.57 -2.39 -0.02 1.35 16 Total: -1.00 -62.23 391.78 -2.42 -64.65 By element: Atomic # 1 Polarization: 45.46 SS G_CDS: -0.22 Total: 45.24 kcal Atomic # 6 Polarization: 23.34 SS G_CDS: 6.16 Total: 29.50 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -8.34 Total: -107.83 kcal Atomic # 8 Polarization: -73.53 SS G_CDS: -2.05 Total: -75.57 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -62.23 -2.42 -64.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118217680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.843 kcal (2) G-P(sol) polarization free energy of solvation -62.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds