Wall clock time and date at job start Sat Apr 11 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.34771 * 119.99694 * 179.97438 * 5 4 2 7 7 O 1.21358 * 120.00230 * 0.02562 * 6 5 4 8 8 C 1.49455 * 119.99986 * 180.02562 * 6 5 4 9 9 O 1.21341 * 119.99719 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99918 * 180.02562 * 8 6 5 11 11 C 1.47018 * 125.65108 * 359.68647 * 10 8 6 12 12 C 1.54334 * 107.26609 * 178.85598 * 11 10 8 13 13 C 1.55150 * 103.02083 * 338.13653 * 12 11 10 14 14 O 1.42898 * 111.01022 * 277.23511 * 13 12 11 15 15 C 1.50701 * 111.03763 * 153.39710 * 13 12 11 16 16 H 1.07993 * 119.99687 * 6.33496 * 15 13 12 17 17 C 1.37877 * 120.00040 * 186.33469 * 15 13 12 18 18 N 1.31510 * 119.99901 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99851 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46685 * 90.00531 * 19 17 15 21 21 H 1.48502 * 109.46845 * 209.99949 * 19 17 15 22 22 H 1.48495 * 109.47101 * 330.00293 * 19 17 15 23 23 C 1.47425 * 125.64807 * 180.02562 * 10 8 6 24 24 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 25 25 C 1.46893 * 111.00189 * 306.04680 * 24 2 1 26 26 C 1.46903 * 110.99939 * 69.99849 * 24 2 1 27 27 C 1.52999 * 117.49958 * 243.74612 * 26 24 2 28 28 C 1.52998 * 117.49922 * 175.08399 * 26 24 2 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.88337 * 298.39879 * 11 10 8 36 36 H 1.08999 * 109.88102 * 59.56090 * 11 10 8 37 37 H 1.09005 * 110.84679 * 219.67345 * 12 11 10 38 38 H 1.08994 * 110.51996 * 96.45143 * 12 11 10 39 39 H 0.96693 * 114.00586 * 173.64487 * 14 13 12 40 40 H 0.97010 * 120.00119 * 180.02562 * 18 17 15 41 41 H 1.09009 * 110.36543 * 322.92989 * 23 10 8 42 42 H 1.09007 * 110.36552 * 85.13710 * 23 10 8 43 43 H 1.08997 * 109.47231 * 60.00105 * 25 24 2 44 44 H 1.09001 * 109.47433 * 179.97438 * 25 24 2 45 45 H 1.09003 * 109.47029 * 299.99707 * 25 24 2 46 46 H 1.09004 * 115.54855 * 29.41845 * 26 24 2 47 47 H 1.09004 * 117.49832 * 359.97438 * 27 26 24 48 48 H 1.08993 * 117.49913 * 145.02268 * 27 26 24 49 49 H 1.09001 * 117.50084 * 214.98152 * 28 26 24 50 50 H 1.09002 * 117.49807 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1910 7 8 3.5697 -1.8836 3.1404 8 6 5.6627 -1.5350 2.1315 9 8 6.2660 -1.0802 1.1820 10 7 6.3356 -2.1374 3.1318 11 6 5.7336 -2.7244 4.3379 12 6 6.8817 -3.3216 5.1787 13 6 8.0088 -3.5303 4.1332 14 8 7.8272 -4.7563 3.4218 15 6 9.3668 -3.4835 4.7849 16 1 9.4479 -3.4235 5.8601 17 6 10.5057 -3.5172 4.0085 18 7 10.4069 -3.5897 2.6991 19 14 12.1889 -3.4584 4.8164 20 1 12.6465 -4.8408 5.1080 21 1 13.1549 -2.8002 3.9004 22 1 12.1035 -2.6877 6.0828 23 6 7.7980 -2.3106 3.2013 24 7 2.0197 -0.6924 -1.1995 25 6 1.4344 -2.0353 -1.3080 26 6 1.7529 0.0974 -2.4090 27 6 0.8025 -0.5009 -3.4481 28 6 2.3047 -0.4319 -3.7343 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -0.1584 2.1369 33 1 1.6055 -1.7199 1.2951 34 1 3.9825 -0.4621 0.4319 35 1 5.2170 -1.9521 4.9078 36 1 5.0337 -3.5115 4.0573 37 1 6.5847 -4.2727 5.6207 38 1 7.1964 -2.6184 5.9498 39 1 8.4497 -4.8841 2.6931 40 1 11.2082 -3.6138 2.1528 41 1 8.2033 -2.5157 2.2104 42 1 8.2656 -1.4217 3.6250 43 1 0.3492 -1.9548 -1.3695 44 1 1.8134 -2.5256 -2.2047 45 1 1.7061 -2.6220 -0.4304 46 1 1.7299 1.1782 -2.2692 47 1 0.3755 -1.4808 -3.2344 48 1 0.1546 0.1862 -3.9921 49 1 2.6443 0.3007 -4.4665 50 1 2.8653 -1.3663 -3.7087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118217683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:22 Heat of formation + Delta-G solvation = -71.949437 kcal Electronic energy + Delta-G solvation = -30540.661279 eV Core-core repulsion = 26376.464626 eV Total energy + Delta-G solvation = -4164.196653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.38138 -39.65149 -38.31910 -37.09764 -36.11889 -34.35445 -33.46357 -32.22495 -30.51164 -30.16281 -27.91420 -27.18408 -26.94308 -25.49070 -23.47394 -22.63882 -21.93111 -21.40302 -19.95454 -19.68285 -19.20136 -17.39667 -17.29852 -17.04691 -16.49684 -15.86181 -15.68689 -15.28697 -15.12160 -15.04351 -14.48564 -14.45419 -14.11449 -13.89169 -13.34547 -13.13850 -12.99696 -12.87565 -12.76851 -12.60393 -12.38715 -12.21163 -12.18466 -11.89199 -11.63863 -11.61673 -11.45934 -11.22292 -11.04553 -11.03392 -11.00084 -10.75400 -10.60621 -10.53489 -10.45238 -10.18130 -9.34611 -9.09290 -9.05513 -8.67786 -8.47263 -8.36704 -7.84039 -6.27266 -4.36742 1.90948 2.74441 3.22021 3.27021 3.29549 3.32094 3.66094 3.71462 4.02155 4.27932 4.35363 4.53424 4.56597 4.66282 4.77665 4.82491 4.88557 4.93051 5.00592 5.15880 5.23458 5.29462 5.32778 5.43501 5.48991 5.53913 5.59404 5.64923 5.73618 5.79901 5.83297 5.83751 5.87691 6.10855 6.28667 6.41953 6.56079 6.66753 6.72064 6.76641 6.86283 6.89628 7.21901 7.33185 7.43562 7.74622 7.98235 8.05216 8.15279 8.54663 8.67470 9.30802 9.39323 10.79873 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.002394 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.460157 B =11691.547037 C =12465.693054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.093 0.907 4 C 0.128 3.872 5 N -0.695 5.695 6 C 0.508 3.492 7 O -0.524 6.524 8 C 0.508 3.492 9 O -0.536 6.536 10 N -0.576 5.576 11 C 0.113 3.887 12 C -0.122 4.122 13 C 0.248 3.752 14 O -0.581 6.581 15 C -0.536 4.536 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.893 5.893 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.092 3.908 24 N -0.502 5.502 25 C 0.013 3.987 26 C 0.023 3.977 27 C -0.220 4.220 28 C -0.169 4.169 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.419 0.581 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 7.618 -8.524 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.041 4.041 3 H 0.111 0.889 4 C 0.004 3.996 5 N -0.349 5.349 6 C 0.289 3.711 7 O -0.400 6.400 8 C 0.290 3.710 9 O -0.415 6.415 10 N -0.308 5.308 11 C -0.010 4.010 12 C -0.160 4.160 13 C 0.208 3.792 14 O -0.389 6.389 15 C -0.574 4.574 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.532 5.532 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.029 4.029 24 N -0.223 5.223 25 C -0.135 4.135 26 C -0.086 4.086 27 C -0.259 4.259 28 C -0.207 4.207 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.230 0.770 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.135 0.865 47 H 0.117 0.883 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.649 7.424 -8.047 22.494 hybrid contribution 0.690 0.387 -0.605 0.996 sum -18.959 7.811 -8.653 22.256 Atomic orbital electron populations 1.22385 0.95882 1.02910 1.02865 1.22038 0.93804 0.98697 0.89534 0.88905 1.21445 0.80232 1.01076 0.96835 1.45582 1.07126 1.58493 1.23706 1.20413 0.88975 0.78821 0.82874 1.90718 1.70084 1.46359 1.32836 1.19587 0.87358 0.80846 0.83226 1.90726 1.69580 1.48487 1.32683 1.48648 1.10252 1.52700 1.19213 1.22121 0.96077 0.97377 0.85432 1.22712 0.94891 1.00564 0.97801 1.19639 0.91989 0.80731 0.86861 1.86127 1.61235 1.40970 1.50613 1.21460 0.89876 1.52166 0.93933 0.91414 1.25090 0.99901 0.93383 0.94913 1.69715 1.30179 1.49450 1.03827 0.86393 0.82846 0.78346 0.79259 1.20398 1.21033 1.19695 1.23469 0.75094 1.00550 1.03738 1.61999 1.57012 1.02508 1.00804 1.22590 0.97570 0.90129 1.03213 1.22606 1.02836 0.97005 0.86131 1.23567 0.93653 1.03503 1.05158 1.23083 0.95601 1.03725 0.98312 0.91740 0.91525 0.91789 0.90624 0.91173 0.74367 0.91832 0.91267 0.90578 0.90418 0.76973 0.91989 0.89133 0.91518 0.94331 0.91131 0.90834 0.86475 0.88285 0.89024 0.88464 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 8.49 37.16 0.32 -0.79 16 2 C 0.07 0.53 2.44 -67.71 -0.17 0.36 16 3 H 0.09 0.69 7.96 -51.93 -0.41 0.27 16 4 C 0.13 1.31 4.84 -4.04 -0.02 1.29 16 5 N -0.69 -9.40 5.38 -60.73 -0.33 -9.73 16 6 C 0.51 8.82 7.86 -11.59 -0.09 8.72 16 7 O -0.52 -9.69 14.12 5.49 0.08 -9.61 16 8 C 0.51 10.49 7.91 -11.58 -0.09 10.40 16 9 O -0.54 -12.08 16.73 5.50 0.09 -11.98 16 10 N -0.58 -12.47 3.33 -171.00 -0.57 -13.04 16 11 C 0.11 2.22 5.49 -3.06 -0.02 2.21 16 12 C -0.12 -2.52 6.13 -24.89 -0.15 -2.67 16 13 C 0.25 6.07 0.87 -89.61 -0.08 5.99 16 14 O -0.58 -14.94 13.16 -35.23 -0.46 -15.40 16 15 C -0.54 -13.92 8.27 -34.44 -0.28 -14.21 16 16 H 0.07 1.72 7.79 -52.49 -0.41 1.32 16 17 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 18 N -0.89 -23.67 10.69 55.43 0.59 -23.08 16 19 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.09 2.23 5.38 -2.52 -0.01 2.21 16 24 N -0.50 -4.34 4.36 -226.91 -0.99 -5.33 16 25 C 0.01 0.10 7.41 60.06 0.45 0.55 16 26 C 0.02 0.18 5.20 -67.71 -0.35 -0.17 16 27 C -0.22 -1.46 9.51 -26.69 -0.25 -1.71 16 28 C -0.17 -1.29 9.99 -26.69 -0.27 -1.56 16 29 H 0.06 0.41 6.33 -51.93 -0.33 0.08 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 7.52 -51.93 -0.39 -0.02 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.75 6.80 -51.93 -0.35 0.40 16 34 H 0.42 5.69 7.61 -40.82 -0.31 5.38 16 35 H 0.06 1.16 7.71 -51.93 -0.40 0.76 16 36 H 0.07 1.38 7.57 -51.93 -0.39 0.99 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 39 H 0.38 9.95 7.56 45.56 0.34 10.29 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.09 2.42 7.33 -51.92 -0.38 2.04 16 42 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 43 H 0.04 0.27 5.30 -51.93 -0.28 0.00 16 44 H 0.07 0.59 6.63 -51.93 -0.34 0.25 16 45 H 0.07 0.70 6.58 -51.93 -0.34 0.36 16 46 H 0.12 0.79 7.93 -51.93 -0.41 0.38 16 47 H 0.10 0.67 5.89 -51.93 -0.31 0.36 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.10 0.85 7.56 -51.93 -0.39 0.46 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -29.25 392.86 -9.00 -38.24 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -7.19 Total: 16.39 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -1.12 Total: 12.35 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -1.29 Total: -51.18 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.29 Total: -36.99 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.25 -9.00 -38.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118217683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.708 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds