Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.34771 * 119.99694 * 179.97438 * 5 4 2 7 7 O 1.21358 * 120.00230 * 0.02562 * 6 5 4 8 8 C 1.49455 * 119.99986 * 180.02562 * 6 5 4 9 9 O 1.21341 * 119.99719 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99918 * 180.02562 * 8 6 5 11 11 C 1.47018 * 125.65108 * 359.68647 * 10 8 6 12 12 C 1.54334 * 107.26609 * 178.85598 * 11 10 8 13 13 C 1.55150 * 103.02083 * 338.13653 * 12 11 10 14 14 O 1.42898 * 111.01022 * 277.23511 * 13 12 11 15 15 C 1.50701 * 111.03763 * 153.39710 * 13 12 11 16 16 H 1.07993 * 119.99687 * 6.33496 * 15 13 12 17 17 C 1.37877 * 120.00040 * 186.33469 * 15 13 12 18 18 N 1.31510 * 119.99901 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99851 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46685 * 90.00531 * 19 17 15 21 21 H 1.48502 * 109.46845 * 209.99949 * 19 17 15 22 22 H 1.48495 * 109.47101 * 330.00293 * 19 17 15 23 23 C 1.47425 * 125.64807 * 180.02562 * 10 8 6 24 24 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 25 25 C 1.46893 * 111.00189 * 306.04680 * 24 2 1 26 26 C 1.46903 * 110.99939 * 69.99849 * 24 2 1 27 27 C 1.52999 * 117.49958 * 243.74612 * 26 24 2 28 28 C 1.52998 * 117.49922 * 175.08399 * 26 24 2 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.88337 * 298.39879 * 11 10 8 36 36 H 1.08999 * 109.88102 * 59.56090 * 11 10 8 37 37 H 1.09005 * 110.84679 * 219.67345 * 12 11 10 38 38 H 1.08994 * 110.51996 * 96.45143 * 12 11 10 39 39 H 0.96693 * 114.00586 * 173.64487 * 14 13 12 40 40 H 0.97010 * 120.00119 * 180.02562 * 18 17 15 41 41 H 1.09009 * 110.36543 * 322.92989 * 23 10 8 42 42 H 1.09007 * 110.36552 * 85.13710 * 23 10 8 43 43 H 1.08997 * 109.47231 * 60.00105 * 25 24 2 44 44 H 1.09001 * 109.47433 * 179.97438 * 25 24 2 45 45 H 1.09003 * 109.47029 * 299.99707 * 25 24 2 46 46 H 1.09004 * 115.54855 * 29.41845 * 26 24 2 47 47 H 1.09004 * 117.49832 * 359.97438 * 27 26 24 48 48 H 1.08993 * 117.49913 * 145.02268 * 27 26 24 49 49 H 1.09001 * 117.50084 * 214.98152 * 28 26 24 50 50 H 1.09002 * 117.49807 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1910 7 8 3.5697 -1.8836 3.1404 8 6 5.6627 -1.5350 2.1315 9 8 6.2660 -1.0802 1.1820 10 7 6.3356 -2.1374 3.1318 11 6 5.7336 -2.7244 4.3379 12 6 6.8817 -3.3216 5.1787 13 6 8.0088 -3.5303 4.1332 14 8 7.8272 -4.7563 3.4218 15 6 9.3668 -3.4835 4.7849 16 1 9.4479 -3.4235 5.8601 17 6 10.5057 -3.5172 4.0085 18 7 10.4069 -3.5897 2.6991 19 14 12.1889 -3.4584 4.8164 20 1 12.6465 -4.8408 5.1080 21 1 13.1549 -2.8002 3.9004 22 1 12.1035 -2.6877 6.0828 23 6 7.7980 -2.3106 3.2013 24 7 2.0197 -0.6924 -1.1995 25 6 1.4344 -2.0353 -1.3080 26 6 1.7529 0.0974 -2.4090 27 6 0.8025 -0.5009 -3.4481 28 6 2.3047 -0.4319 -3.7343 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -0.1584 2.1369 33 1 1.6055 -1.7199 1.2951 34 1 3.9825 -0.4621 0.4319 35 1 5.2170 -1.9521 4.9078 36 1 5.0337 -3.5115 4.0573 37 1 6.5847 -4.2727 5.6207 38 1 7.1964 -2.6184 5.9498 39 1 8.4497 -4.8841 2.6931 40 1 11.2082 -3.6138 2.1528 41 1 8.2033 -2.5157 2.2104 42 1 8.2656 -1.4217 3.6250 43 1 0.3492 -1.9548 -1.3695 44 1 1.8134 -2.5256 -2.2047 45 1 1.7061 -2.6220 -0.4304 46 1 1.7299 1.1782 -2.2692 47 1 0.3755 -1.4808 -3.2344 48 1 0.1546 0.1862 -3.9921 49 1 2.6443 0.3007 -4.4665 50 1 2.8653 -1.3663 -3.7087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118217683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -94.270580 kcal Electronic energy + Delta-G solvation = -30541.629196 eV Core-core repulsion = 26376.464626 eV Total energy + Delta-G solvation = -4165.164570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79011 -40.53846 -39.76518 -38.83411 -36.99321 -36.08328 -34.54579 -34.23576 -31.92928 -31.17833 -29.70369 -28.34492 -27.56764 -27.15826 -25.04975 -23.25242 -23.16806 -22.35220 -21.54046 -20.90381 -20.32731 -19.13901 -18.67612 -18.03937 -17.94251 -17.21583 -17.05623 -16.91345 -16.29119 -16.15969 -15.98744 -15.65545 -15.34421 -14.90799 -14.80110 -14.66230 -14.49153 -14.00506 -13.92081 -13.79854 -13.51488 -13.31638 -13.24077 -12.96101 -12.90228 -12.83845 -12.65203 -12.51435 -12.50322 -12.34925 -12.21881 -12.19132 -12.09953 -11.85687 -11.60417 -11.20976 -11.17553 -10.73655 -10.55087 -10.32781 -10.23173 -9.61865 -9.08215 -8.24246 -6.41192 0.39414 1.32736 1.44873 1.46479 1.55868 2.17112 2.38379 2.53125 2.71151 3.01641 3.09028 3.40914 3.66647 3.78484 3.94084 4.01311 4.06941 4.10490 4.16099 4.16885 4.26369 4.29389 4.33665 4.55087 4.57332 4.64925 4.67480 4.74677 4.77042 4.81279 4.89983 4.99096 4.99592 5.05922 5.06826 5.13077 5.16452 5.20823 5.26548 5.30743 5.34711 5.44355 5.75134 6.02527 6.03525 6.09593 6.13674 6.41430 6.65384 6.71978 6.98497 7.27243 7.35437 8.81356 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.002394 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.460157 B =11691.547037 C =12465.693054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 H 0.101 0.899 4 C 0.126 3.874 5 N -0.676 5.676 6 C 0.515 3.485 7 O -0.535 6.535 8 C 0.500 3.500 9 O -0.561 6.561 10 N -0.584 5.584 11 C 0.120 3.880 12 C -0.115 4.115 13 C 0.233 3.767 14 O -0.588 6.588 15 C -0.554 4.554 16 H 0.070 0.930 17 C 0.027 3.973 18 N -0.915 5.915 19 Si 0.966 3.034 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.106 3.894 24 N -0.520 5.520 25 C 0.016 3.984 26 C 0.020 3.980 27 C -0.206 4.206 28 C -0.182 4.182 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.420 0.580 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.129 0.871 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.346 8.645 -8.034 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.034 4.034 3 H 0.119 0.881 4 C 0.003 3.997 5 N -0.328 5.328 6 C 0.294 3.706 7 O -0.413 6.413 8 C 0.284 3.716 9 O -0.442 6.442 10 N -0.316 5.316 11 C -0.001 4.001 12 C -0.153 4.153 13 C 0.193 3.807 14 O -0.395 6.395 15 C -0.592 4.592 16 H 0.088 0.912 17 C -0.174 4.174 18 N -0.554 5.554 19 Si 0.791 3.209 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.016 4.016 24 N -0.241 5.241 25 C -0.132 4.132 26 C -0.089 4.089 27 C -0.245 4.245 28 C -0.220 4.220 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.257 0.743 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.223 0.777 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.146 0.854 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.123 0.877 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.397 8.463 -7.563 24.221 hybrid contribution 1.191 0.079 -0.837 1.458 sum -20.206 8.542 -8.400 23.491 Atomic orbital electron populations 1.22317 0.94144 1.03073 1.03757 1.22006 0.94988 0.98431 0.87975 0.88080 1.21727 0.77648 1.01604 0.98753 1.45600 1.08591 1.56423 1.22236 1.19747 0.87178 0.79813 0.83819 1.90711 1.69577 1.47497 1.33512 1.20317 0.89108 0.79808 0.82382 1.90701 1.70638 1.49323 1.33494 1.48699 1.09333 1.53251 1.20310 1.22143 0.95518 0.97821 0.84663 1.22725 0.93733 1.01565 0.97280 1.19871 0.93107 0.80117 0.87643 1.86120 1.61035 1.41883 1.50484 1.21749 0.90893 1.52407 0.94193 0.91166 1.25826 1.03187 0.93033 0.95372 1.69829 1.30853 1.49819 1.04851 0.85436 0.78719 0.78277 0.78483 1.20169 1.21064 1.18938 1.23052 0.76813 1.00078 1.01674 1.61951 1.57762 1.02830 1.01606 1.22528 0.98470 0.89961 1.02223 1.22677 1.03249 0.97416 0.85575 1.23566 0.93026 1.03602 1.04260 1.23105 0.96546 1.03365 0.99000 0.91922 0.90538 0.90982 0.89612 0.91350 0.74279 0.89707 0.91381 0.89646 0.88915 0.77749 0.92073 0.92438 0.92608 0.92826 0.91681 0.92292 0.85358 0.88376 0.87720 0.87738 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 8.49 71.98 0.61 -1.03 16 2 C 0.07 1.00 2.44 44.92 0.11 1.11 16 3 H 0.10 1.23 7.96 -2.39 -0.02 1.21 16 4 C 0.13 2.34 4.84 86.38 0.42 2.76 16 5 N -0.68 -17.57 5.38 -464.41 -2.50 -20.06 16 6 C 0.51 17.45 7.86 87.27 0.69 18.14 16 7 O -0.54 -19.05 14.12 -3.27 -0.05 -19.10 16 8 C 0.50 20.80 7.91 87.27 0.69 21.49 16 9 O -0.56 -25.81 16.73 -3.22 -0.05 -25.87 16 10 N -0.58 -25.43 3.33 -813.30 -2.70 -28.13 16 11 C 0.12 4.63 5.49 86.73 0.48 5.11 16 12 C -0.12 -4.65 6.13 31.78 0.19 -4.46 16 13 C 0.23 11.47 0.87 -10.14 -0.01 11.46 16 14 O -0.59 -30.74 13.16 -148.98 -1.96 -32.70 16 15 C -0.55 -28.84 8.27 25.60 0.21 -28.63 16 16 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 17 C 0.03 1.40 5.29 84.66 0.45 1.85 16 18 N -0.91 -49.49 10.69 21.45 0.23 -49.26 16 19 Si 0.97 41.58 29.54 68.60 2.03 43.61 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 C 0.11 5.24 5.38 86.86 0.47 5.71 16 24 N -0.52 -8.27 4.36 -871.80 -3.80 -12.07 16 25 C 0.02 0.25 7.41 127.69 0.95 1.19 16 26 C 0.02 0.26 5.20 44.91 0.23 0.50 16 27 C -0.21 -2.34 9.51 30.62 0.29 -2.05 16 28 C -0.18 -2.63 9.99 30.62 0.31 -2.32 16 29 H 0.06 0.63 6.33 -2.39 -0.02 0.62 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.61 7.52 -2.39 -0.02 0.59 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.36 6.80 -2.39 -0.02 1.34 16 34 H 0.42 11.08 7.61 -92.71 -0.71 10.37 16 35 H 0.08 2.92 7.71 -2.39 -0.02 2.90 16 36 H 0.07 2.64 7.57 -2.39 -0.02 2.62 16 37 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 38 H 0.09 3.44 8.03 -2.39 -0.02 3.42 16 39 H 0.37 20.23 7.56 -74.06 -0.56 19.67 16 40 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 41 H 0.06 3.20 7.33 -2.38 -0.02 3.18 16 42 H 0.06 2.82 8.03 -2.38 -0.02 2.80 16 43 H 0.05 0.66 5.30 -2.39 -0.01 0.65 16 44 H 0.06 1.08 6.63 -2.39 -0.02 1.06 16 45 H 0.06 1.09 6.58 -2.39 -0.02 1.07 16 46 H 0.13 1.42 7.93 -2.38 -0.02 1.40 16 47 H 0.10 1.15 5.89 -2.38 -0.01 1.13 16 48 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.08 1.44 7.56 -2.39 -0.02 1.43 16 Total: -1.00 -62.83 392.86 -3.02 -65.85 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: -0.29 Total: 46.91 kcal Atomic # 6 Polarization: 24.74 SS G_CDS: 6.08 Total: 30.82 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -8.78 Total: -109.53 kcal Atomic # 8 Polarization: -75.60 SS G_CDS: -2.06 Total: -77.66 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -62.83 -3.02 -65.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118217683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.418 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds