Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47213 * 2 1 4 4 N 1.46503 * 109.47083 * 239.99845 * 2 1 3 5 5 C 1.34777 * 119.99748 * 85.00075 * 4 2 1 6 6 O 1.21342 * 120.00257 * 0.02562 * 5 4 2 7 7 C 1.49450 * 119.99552 * 179.97438 * 5 4 2 8 8 O 1.21354 * 120.00250 * 6.45774 * 7 5 4 9 9 N 1.34774 * 119.99795 * 186.17842 * 7 5 4 10 10 C 1.47084 * 120.88434 * 358.37470 * 9 7 5 11 11 C 1.53690 * 108.27752 * 128.75180 * 10 9 7 12 12 N 1.46893 * 109.25922 * 54.08315 * 11 10 9 13 13 C 1.46907 * 111.00061 * 172.60517 * 12 11 10 14 14 C 1.50695 * 109.47194 * 294.30485 * 13 12 11 15 15 H 1.08008 * 120.00157 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00175 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99678 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00047 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47557 * 89.99588 * 18 16 14 20 20 H 1.48507 * 109.47121 * 210.00017 * 18 16 14 21 21 H 1.48507 * 109.47112 * 329.99702 * 18 16 14 22 22 C 1.46899 * 111.26859 * 296.75450 * 12 11 10 23 23 C 1.47086 * 120.88312 * 178.64666 * 9 7 5 24 24 C 1.53001 * 109.47122 * 119.99628 * 2 1 3 25 25 H 1.09001 * 110.43595 * 58.91215 * 24 2 1 26 26 C 1.54810 * 110.49263 * 296.22223 * 24 2 1 27 27 C 1.54991 * 102.09356 * 220.44459 * 26 24 2 28 28 O 1.44373 * 103.49129 * 37.02173 * 27 26 24 29 29 C 1.43746 * 106.97878 * 319.94000 * 28 27 26 30 30 H 1.08998 * 109.47175 * 299.99967 * 1 2 3 31 31 H 1.08991 * 109.46946 * 60.00224 * 1 2 3 32 32 H 1.09000 * 109.46761 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99811 * 264.99250 * 4 2 1 34 34 H 1.09001 * 109.62828 * 248.52436 * 10 9 7 35 35 H 1.09002 * 109.62279 * 9.09874 * 10 9 7 36 36 H 1.09004 * 109.64716 * 294.07522 * 11 10 9 37 37 H 1.09003 * 109.44063 * 173.96344 * 11 10 9 38 38 H 1.09002 * 109.46698 * 54.30076 * 13 12 11 39 39 H 1.08999 * 109.47319 * 174.30382 * 13 12 11 40 40 H 0.96998 * 119.99855 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.49286 * 303.14235 * 22 12 11 42 42 H 1.09007 * 109.49101 * 183.06173 * 22 12 11 43 43 H 1.09004 * 109.62735 * 350.90390 * 23 9 7 44 44 H 1.08992 * 109.62545 * 111.47877 * 23 9 7 45 45 H 1.09009 * 110.90147 * 338.64353 * 26 24 2 46 46 H 1.09002 * 110.90484 * 102.23910 * 26 24 2 47 47 H 1.08996 * 110.61552 * 278.51964 * 27 26 24 48 48 H 1.09004 * 110.61572 * 155.52469 * 27 26 24 49 49 H 1.08997 * 109.87700 * 267.09139 * 29 28 27 50 50 H 1.08993 * 109.87979 * 145.94173 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8589 1.1592 -2.4115 7 6 2.6458 -0.7227 -3.5772 8 8 2.8233 -1.9230 -3.5549 9 7 2.8930 -0.0258 -4.7039 10 6 2.6452 1.4227 -4.7654 11 6 3.9146 2.1067 -5.2975 12 7 4.2997 1.4884 -6.5731 13 6 5.4035 2.2251 -7.2032 14 6 4.9310 3.6023 -7.5920 15 1 3.9124 3.9003 -7.3915 16 6 5.7986 4.4814 -8.2046 17 7 7.0387 4.1183 -8.4492 18 14 5.2131 6.1887 -8.6859 19 1 5.4487 7.1285 -7.5605 20 1 5.9630 6.6504 -9.8817 21 1 3.7619 6.1446 -8.9983 22 6 4.6458 0.0719 -6.3956 23 6 3.4122 -0.6945 -5.9067 24 6 2.0400 -0.7212 1.2493 25 1 1.6696 -1.7460 1.2750 26 6 1.6166 0.0432 2.5272 27 6 2.8876 -0.0664 3.4073 28 8 3.9672 0.0462 2.4554 29 6 3.5804 -0.7032 1.2914 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6318 -1.1525 34 1 1.8093 1.6231 -5.4356 35 1 2.4164 1.7976 -3.7678 36 1 4.7239 1.9887 -4.5770 37 1 3.7173 3.1675 -5.4523 38 1 6.2317 2.3104 -6.4996 39 1 5.7360 1.6905 -8.0929 40 1 7.6492 4.7369 -8.8799 41 1 5.4450 -0.0179 -5.6599 42 1 4.9784 -0.3433 -7.3471 43 1 3.6906 -1.7201 -5.6641 44 1 2.6486 -0.6937 -6.6844 45 1 1.3894 1.0849 2.2999 46 1 0.7674 -0.4427 3.0077 47 1 2.9215 -1.0309 3.9139 48 1 2.9259 0.7492 4.1295 49 1 3.9611 -1.7220 1.3631 50 1 3.9701 -0.2220 0.3944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119139657.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -112.207551 kcal Electronic energy + Delta-G solvation = -30407.022929 eV Core-core repulsion = 26241.080553 eV Total energy + Delta-G solvation = -4165.942376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.17642 -40.79042 -39.83846 -39.02111 -37.19585 -35.94867 -34.42211 -33.48142 -32.20941 -30.82645 -30.13937 -29.85987 -27.78310 -25.95142 -24.79525 -24.16839 -23.65608 -23.07486 -21.87021 -21.63321 -20.57459 -18.78444 -18.52196 -18.25737 -17.66472 -17.13003 -17.02247 -16.92943 -16.61617 -16.19756 -16.03444 -15.86978 -15.70496 -15.49739 -15.42211 -14.98951 -14.51976 -14.38227 -14.12243 -14.01091 -13.72329 -13.65214 -13.21458 -13.13469 -13.02546 -12.74745 -12.64422 -12.58641 -12.48800 -12.36751 -12.16809 -12.13974 -12.10431 -12.07192 -11.77816 -11.56889 -11.30575 -10.65396 -10.63463 -10.44750 -10.18691 -9.93182 -9.10467 -8.21662 -6.31815 0.24377 1.17730 1.41957 1.43025 1.54814 2.02880 2.32266 2.40641 3.00563 3.10536 3.14275 3.22661 3.39975 3.63060 3.83766 3.90995 3.99708 4.18338 4.21471 4.23281 4.26970 4.32133 4.34394 4.39457 4.47484 4.51665 4.63785 4.74694 4.77058 4.79404 4.85213 4.87697 4.91305 4.95572 4.99728 5.00797 5.10647 5.15939 5.18670 5.28306 5.30433 5.42218 5.62736 5.89931 5.93155 6.00955 6.12699 6.26096 6.54061 6.60749 6.83499 6.85563 7.37971 8.89712 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.002398 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.266837 B =11673.651506 C =12389.684749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.078 0.922 4 N -0.681 5.681 5 C 0.515 3.485 6 O -0.521 6.521 7 C 0.503 3.497 8 O -0.545 6.545 9 N -0.577 5.577 10 C 0.072 3.928 11 C 0.055 3.945 12 N -0.541 5.541 13 C 0.208 3.792 14 C -0.523 4.523 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.041 3.959 23 C 0.122 3.878 24 C -0.121 4.121 25 H 0.117 0.883 26 C -0.139 4.139 27 C 0.037 3.963 28 O -0.409 6.409 29 C 0.043 3.957 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.420 0.580 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.010 0.990 37 H 0.082 0.918 38 H -0.042 1.042 39 H 0.009 0.991 40 H 0.264 0.736 41 H 0.017 0.983 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.075 0.925 48 H 0.101 0.899 49 H 0.072 0.928 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.143 -12.906 23.632 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 H 0.096 0.904 4 N -0.334 5.334 5 C 0.297 3.703 6 O -0.400 6.400 7 C 0.286 3.714 8 O -0.424 6.424 9 N -0.309 5.309 10 C -0.049 4.049 11 C -0.074 4.074 12 N -0.265 5.265 13 C 0.082 3.918 14 C -0.561 4.561 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.088 4.088 23 C 0.000 4.000 24 C -0.140 4.140 25 H 0.135 0.865 26 C -0.177 4.177 27 C -0.039 4.039 28 O -0.329 6.329 29 C -0.033 4.033 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.257 0.743 34 H 0.097 0.903 35 H 0.174 0.826 36 H 0.028 0.972 37 H 0.100 0.900 38 H -0.024 1.024 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.107 0.893 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.131 0.869 47 H 0.093 0.907 48 H 0.119 0.881 49 H 0.090 0.910 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.303 -12.521 23.253 30.523 hybrid contribution 1.280 0.423 -0.426 1.414 sum -14.023 -12.097 22.827 29.395 Atomic orbital electron populations 1.22166 0.92955 1.03480 1.03122 1.21285 0.95606 0.96665 0.82007 0.90352 1.45882 1.64119 1.15164 1.08202 1.20006 0.78788 0.86567 0.84977 1.90360 1.50176 1.16056 1.83380 1.20214 0.79564 0.87017 0.84603 1.90715 1.53297 1.14265 1.84132 1.48230 1.60802 1.10439 1.11436 1.23434 0.96572 0.77331 1.07545 1.22408 0.95970 0.99942 0.89056 1.62065 1.39844 1.01593 1.23045 1.19383 0.86963 0.93308 0.92137 1.21453 0.97785 0.98272 1.38622 0.91557 1.25931 0.94859 1.03193 0.95721 1.70087 1.06007 1.37714 1.43760 0.85366 0.78704 0.78712 0.77753 1.19888 1.20810 1.18685 1.22473 0.95915 0.89778 1.00602 1.21875 0.95685 0.96631 0.85793 1.22860 0.94776 1.02183 0.94218 0.86504 1.23192 0.99156 1.01755 0.93579 1.23814 0.84850 1.02953 0.92300 1.88889 1.42963 1.73437 1.27636 1.23328 0.94614 0.96721 0.88686 0.89169 0.93577 0.90721 0.74252 0.90313 0.82589 0.97168 0.90018 1.02410 0.97295 0.92680 0.96471 0.89258 0.87795 0.89139 0.90162 0.86935 0.90687 0.88105 0.90990 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.30 71.98 0.67 -1.04 16 2 C 0.15 1.98 1.84 44.99 0.08 2.06 16 3 H 0.08 1.42 7.57 -2.38 -0.02 1.40 16 4 N -0.68 -11.56 4.49 -443.86 -1.99 -13.56 16 5 C 0.52 12.59 7.77 87.27 0.68 13.27 16 6 O -0.52 -14.64 12.69 -3.22 -0.04 -14.68 16 7 C 0.50 14.24 7.77 87.27 0.68 14.92 16 8 O -0.55 -16.26 15.95 -3.26 -0.05 -16.32 16 9 N -0.58 -17.69 3.00 -818.62 -2.46 -20.15 16 10 C 0.07 2.34 6.39 86.50 0.55 2.89 16 11 C 0.06 2.21 5.47 86.54 0.47 2.68 16 12 N -0.54 -23.68 4.62 -898.89 -4.15 -27.83 16 13 C 0.21 11.24 4.72 85.55 0.40 11.65 16 14 C -0.52 -29.71 8.41 25.60 0.22 -29.50 16 15 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.94 -56.74 13.29 21.45 0.28 -56.45 16 18 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 22 C 0.04 1.51 5.62 86.38 0.49 1.99 16 23 C 0.12 3.66 6.59 86.35 0.57 4.23 16 24 C -0.12 -1.11 2.67 -9.80 -0.03 -1.14 16 25 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 26 C -0.14 -0.96 5.75 31.89 0.18 -0.77 16 27 C 0.04 0.37 7.72 72.66 0.56 0.94 16 28 O -0.41 -7.73 11.52 -148.98 -1.72 -9.45 16 29 C 0.04 0.64 7.15 72.35 0.52 1.16 16 30 H 0.09 0.64 7.31 -2.39 -0.02 0.62 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.42 5.91 8.09 -92.71 -0.75 5.16 16 34 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.16 4.93 3.90 -76.05 -0.30 4.63 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 3.51 6.67 -2.39 -0.02 3.49 16 38 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 39 H 0.01 0.52 7.97 -2.39 -0.02 0.50 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 3.12 7.99 -2.38 -0.02 3.10 16 43 H 0.10 2.86 7.07 -2.39 -0.02 2.84 16 44 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.08 0.65 7.75 -2.38 -0.02 0.63 16 46 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 1.24 7.41 -2.39 -0.02 1.22 16 Total: -1.00 -71.31 393.91 -1.69 -73.00 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.09 Total: 15.13 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.51 Total: 23.85 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -8.32 Total: -118.00 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.81 Total: -40.45 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.31 -1.69 -73.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119139657.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.212 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds