Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53002 * 109.47645 * 174.99822 * 4 2 1 6 6 H 1.08991 * 109.46949 * 305.00667 * 5 4 2 7 7 C 1.52994 * 109.47244 * 185.00003 * 5 4 2 8 8 N 1.46904 * 109.46339 * 65.00272 * 5 4 2 9 9 C 1.46907 * 110.99560 * 204.99811 * 8 5 4 10 10 C 1.50697 * 109.46936 * 180.02562 * 9 8 5 11 11 O 1.21292 * 120.00244 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99982 * 180.02562 * 10 9 8 13 13 C 1.37096 * 120.00423 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99368 * 359.97438 * 13 12 10 15 15 C 1.38946 * 120.00226 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00151 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47474 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46960 * 120.00028 * 17 15 13 20 20 H 1.48496 * 109.47080 * 239.99454 * 17 15 13 21 21 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 22 22 C 1.34775 * 119.99693 * 275.00198 * 21 2 1 23 23 O 1.21607 * 120.00077 * 359.97438 * 22 21 2 24 24 C 1.47106 * 119.99574 * 179.97438 * 22 21 2 25 25 C 1.32089 * 118.87461 * 179.72923 * 24 22 21 26 26 C 1.50265 * 122.57708 * 180.10250 * 25 24 22 27 27 O 1.42891 * 110.15175 * 344.84030 * 26 25 24 28 28 C 1.43270 * 113.09973 * 50.31499 * 27 26 25 29 29 C 1.50415 * 118.88023 * 359.97438 * 24 22 21 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 34 34 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 35 35 H 1.08999 * 109.47523 * 300.00522 * 7 5 4 36 36 H 1.09000 * 109.47104 * 60.00736 * 7 5 4 37 37 H 1.08999 * 109.47083 * 180.02562 * 7 5 4 38 38 H 1.00893 * 111.00184 * 81.05316 * 8 5 4 39 39 H 1.08995 * 109.47223 * 300.00331 * 9 8 5 40 40 H 1.09006 * 109.46768 * 60.00149 * 9 8 5 41 41 H 0.97006 * 120.00213 * 359.97438 * 12 10 9 42 42 H 0.97002 * 119.99952 * 180.02562 * 16 15 13 43 43 H 0.97000 * 120.00117 * 94.99845 * 21 2 1 44 44 H 1.07995 * 118.71021 * 0.37459 * 25 24 22 45 45 H 1.08998 * 109.51388 * 224.52117 * 26 25 24 46 46 H 1.09002 * 109.06097 * 104.87440 * 26 25 24 47 47 H 1.08999 * 109.63967 * 171.47798 * 28 27 26 48 48 H 1.09002 * 109.64307 * 50.85463 * 28 27 26 49 49 H 1.09002 * 109.45655 * 283.37846 * 29 24 22 50 50 H 1.09002 * 109.45302 * 43.31394 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6240 8 7 4.1552 -1.3363 -0.1793 9 6 5.4834 -0.8026 0.1512 10 6 6.0564 -1.5675 1.3164 11 8 5.4211 -2.4689 1.8215 12 7 7.2748 -1.2500 1.7972 13 6 7.7963 -1.9462 2.8569 14 1 7.2306 -2.7488 3.3066 15 6 9.0526 -1.6192 3.3522 16 7 9.7411 -0.6430 2.8047 17 14 9.7629 -2.5674 4.7966 18 1 8.7971 -3.6098 5.2275 19 1 11.0364 -3.2123 4.3871 20 1 10.0203 -1.6344 5.9227 21 7 2.0184 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3571 23 8 1.8582 1.1618 2.4116 24 6 2.6369 -0.7118 3.5584 25 6 2.7596 -0.0302 4.6831 26 6 3.2535 -0.6542 5.9576 27 8 3.2151 -2.0789 5.8553 28 6 3.8428 -2.5742 4.6664 29 6 2.9862 -2.1717 3.4626 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -1.7716 -1.2056 34 1 1.6054 -0.2618 -2.1370 35 1 3.7722 -2.2742 -2.6699 36 1 3.6264 -0.6888 -3.4657 37 1 5.1508 -1.1486 -2.6698 38 1 4.1998 -2.3269 -0.3655 39 1 6.1420 -0.9074 -0.7109 40 1 5.3960 0.2513 0.4157 41 1 7.7830 -0.5294 1.3931 42 1 10.6183 -0.4150 3.1503 43 1 2.2491 -1.6318 1.1527 44 1 2.4903 1.0157 4.6878 45 1 2.6236 -0.3343 6.7876 46 1 4.2793 -0.3323 6.1374 47 1 3.9166 -3.6606 4.7165 48 1 4.8381 -2.1404 4.5696 49 1 2.0713 -2.7641 3.4534 50 1 3.5443 -2.3519 2.5438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134159718.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -109.964638 kcal Electronic energy + Delta-G solvation = -32012.694962 eV Core-core repulsion = 27846.849846 eV Total energy + Delta-G solvation = -4165.845116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.93870 -38.65541 -38.29088 -37.14989 -34.89164 -33.94936 -33.36173 -31.64982 -31.25569 -30.60051 -29.92576 -26.92406 -26.23717 -25.72270 -23.97953 -23.44779 -21.93859 -20.82207 -20.37294 -19.29367 -18.10999 -17.92653 -17.13730 -16.33639 -16.06812 -15.66196 -15.35996 -15.03779 -14.80899 -14.71366 -14.54115 -14.28927 -14.06755 -13.81182 -13.60139 -13.38673 -13.16077 -12.93529 -12.76192 -12.47123 -12.28982 -12.25256 -12.19580 -11.98966 -11.77628 -11.60638 -11.47186 -11.31120 -11.13855 -10.91860 -10.83563 -10.69010 -10.41762 -10.34694 -10.26199 -9.71281 -9.54320 -9.10767 -8.82854 -8.62532 -8.44287 -8.01402 -7.98090 -6.46624 -3.87361 1.74873 3.12318 3.24130 3.29631 3.56147 3.74501 3.84862 4.05270 4.26795 4.30345 4.57248 4.92907 5.03070 5.10263 5.15488 5.17394 5.22243 5.26029 5.33586 5.37036 5.46058 5.52361 5.55919 5.67827 5.68572 5.70559 5.76544 5.79937 5.80469 5.87343 5.95441 6.01393 6.06639 6.11493 6.21472 6.24121 6.28930 6.42907 6.44068 6.68300 6.92303 6.99150 7.16586 7.47527 7.50153 7.60533 8.00359 8.03132 8.56295 8.69332 9.13031 9.49329 9.99911 10.70983 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.004743 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.839377 B = 5901.797721 C = 8026.088100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 H 0.081 0.919 4 C -0.115 4.115 5 C 0.081 3.919 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.659 5.659 9 C 0.051 3.949 10 C 0.443 3.557 11 O -0.580 6.580 12 N -0.561 5.561 13 C -0.297 4.297 14 H 0.104 0.896 15 C 0.023 3.977 16 N -0.900 5.900 17 Si 0.925 3.075 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.281 1.281 21 N -0.687 5.687 22 C 0.557 3.443 23 O -0.566 6.566 24 C -0.144 4.144 25 C -0.133 4.133 26 C 0.089 3.911 27 O -0.388 6.388 28 C 0.067 3.933 29 C -0.129 4.129 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.346 0.654 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.409 0.591 44 H 0.127 0.873 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.250 -0.154 -6.765 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 H 0.099 0.901 4 C -0.154 4.154 5 C -0.029 4.029 6 H 0.095 0.905 7 C -0.241 4.241 8 N -0.291 5.291 9 C -0.082 4.082 10 C 0.229 3.771 11 O -0.465 6.465 12 N -0.197 5.197 13 C -0.426 4.426 14 H 0.122 0.878 15 C -0.178 4.178 16 N -0.541 5.541 17 Si 0.752 3.248 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.207 1.207 21 N -0.338 5.338 22 C 0.346 3.654 23 O -0.447 6.447 24 C -0.147 4.147 25 C -0.153 4.153 26 C 0.013 3.987 27 O -0.307 6.307 28 C -0.009 4.009 29 C -0.165 4.165 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.166 0.834 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.247 0.753 44 H 0.144 0.856 45 H 0.120 0.880 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.087 0.374 -5.755 15.222 hybrid contribution 1.703 -0.383 -0.651 1.863 sum -12.384 -0.009 -6.405 13.942 Atomic orbital electron populations 1.22206 0.96071 1.01799 1.02131 1.20737 0.92806 0.97383 0.84541 0.90126 1.21923 0.94927 1.01346 0.97155 1.21617 0.94158 0.98702 0.88429 0.90508 1.22508 1.01585 1.01364 0.98653 1.60261 1.22262 1.08122 1.38415 1.21677 0.89765 0.99736 0.97025 1.19731 0.83127 0.87284 0.86997 1.90350 1.60213 1.33551 1.62412 1.41874 1.15102 1.32610 1.30127 1.19690 1.00070 1.14894 1.07974 0.87794 1.25249 0.96523 0.96894 0.99177 1.69616 1.13442 1.29077 1.41949 0.85868 0.78904 0.79383 0.80633 1.19124 1.20821 1.20747 1.45743 1.65327 1.14614 1.08158 1.18380 0.76974 0.86201 0.83847 1.90706 1.52287 1.16026 1.85728 1.20918 1.03288 0.97156 0.93380 1.23554 0.96240 1.00887 0.94643 1.21449 1.00811 0.81485 0.94996 1.88035 1.79931 1.19660 1.43082 1.22595 0.95994 0.99498 0.82833 1.21315 1.00664 0.91138 1.03407 0.92124 0.92238 0.92685 0.91227 0.90462 0.92388 0.92311 0.92573 0.83429 0.94084 0.90096 0.77597 0.91912 0.75336 0.85560 0.87975 0.91284 0.88852 0.91249 0.91513 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 2 C 0.15 1.77 2.57 -67.93 -0.17 1.59 16 3 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 4 C -0.12 -1.05 4.54 -26.73 -0.12 -1.17 16 5 C 0.08 0.85 2.59 -67.71 -0.18 0.68 16 6 H 0.08 0.88 7.80 -51.93 -0.40 0.48 16 7 C -0.18 -1.66 9.16 37.15 0.34 -1.32 16 8 N -0.66 -8.57 3.48 -107.99 -0.38 -8.95 16 9 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 10 C 0.44 9.12 7.82 -10.99 -0.09 9.03 16 11 O -0.58 -12.58 12.92 5.55 0.07 -12.51 16 12 N -0.56 -13.13 5.29 -10.96 -0.06 -13.19 16 13 C -0.30 -7.67 9.68 -14.94 -0.14 -7.82 16 14 H 0.10 2.78 7.16 -52.48 -0.38 2.41 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -23.82 13.05 55.50 0.72 -23.10 16 17 Si 0.92 20.38 29.55 -169.99 -5.02 15.35 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 N -0.69 -9.50 3.74 -54.99 -0.21 -9.70 16 22 C 0.56 9.56 7.69 -12.66 -0.10 9.46 16 23 O -0.57 -11.19 15.72 5.27 0.08 -11.11 16 24 C -0.14 -2.46 5.86 -103.09 -0.60 -3.07 16 25 C -0.13 -2.19 9.58 -36.44 -0.35 -2.54 16 26 C 0.09 1.34 7.04 35.79 0.25 1.59 16 27 O -0.39 -6.61 10.83 -35.23 -0.38 -6.99 16 28 C 0.07 1.16 6.88 37.23 0.26 1.42 16 29 C -0.13 -2.10 5.25 -27.95 -0.15 -2.24 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 38 H 0.35 4.57 8.17 -39.30 -0.32 4.25 16 39 H 0.04 0.61 7.43 -51.93 -0.39 0.22 16 40 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 41 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 42 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.41 5.46 5.90 -40.82 -0.24 5.22 16 44 H 0.13 2.05 7.29 -52.49 -0.38 1.67 16 45 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 48 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 49 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.13 2.31 4.25 -51.93 -0.22 2.08 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -29.14 400.46 -8.01 -37.15 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -8.06 Total: 21.47 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.82 Total: 5.53 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.08 Total: -54.94 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.23 Total: -30.60 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.14 -8.01 -37.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134159718.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.810 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds