Wall clock time and date at job start Sat Apr 11 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53002 * 109.47645 * 174.99822 * 4 2 1 6 6 H 1.08991 * 109.46949 * 305.00667 * 5 4 2 7 7 C 1.52994 * 109.47244 * 185.00003 * 5 4 2 8 8 N 1.46904 * 109.46339 * 65.00272 * 5 4 2 9 9 C 1.46907 * 110.99560 * 204.99811 * 8 5 4 10 10 C 1.50697 * 109.46936 * 180.02562 * 9 8 5 11 11 O 1.21292 * 120.00244 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99982 * 180.02562 * 10 9 8 13 13 C 1.37096 * 120.00423 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99368 * 359.97438 * 13 12 10 15 15 C 1.38946 * 120.00226 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00151 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47474 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46960 * 120.00028 * 17 15 13 20 20 H 1.48496 * 109.47080 * 239.99454 * 17 15 13 21 21 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 22 22 C 1.34775 * 119.99693 * 275.00198 * 21 2 1 23 23 O 1.21607 * 120.00077 * 359.97438 * 22 21 2 24 24 C 1.47106 * 119.99574 * 179.97438 * 22 21 2 25 25 C 1.32089 * 118.87461 * 179.72923 * 24 22 21 26 26 C 1.50265 * 122.57708 * 180.10250 * 25 24 22 27 27 O 1.42891 * 110.15175 * 344.84030 * 26 25 24 28 28 C 1.43270 * 113.09973 * 50.31499 * 27 26 25 29 29 C 1.50415 * 118.88023 * 359.97438 * 24 22 21 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 34 34 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 35 35 H 1.08999 * 109.47523 * 300.00522 * 7 5 4 36 36 H 1.09000 * 109.47104 * 60.00736 * 7 5 4 37 37 H 1.08999 * 109.47083 * 180.02562 * 7 5 4 38 38 H 1.00893 * 111.00184 * 81.05316 * 8 5 4 39 39 H 1.08995 * 109.47223 * 300.00331 * 9 8 5 40 40 H 1.09006 * 109.46768 * 60.00149 * 9 8 5 41 41 H 0.97006 * 120.00213 * 359.97438 * 12 10 9 42 42 H 0.97002 * 119.99952 * 180.02562 * 16 15 13 43 43 H 0.97000 * 120.00117 * 94.99845 * 21 2 1 44 44 H 1.07995 * 118.71021 * 0.37459 * 25 24 22 45 45 H 1.08998 * 109.51388 * 224.52117 * 26 25 24 46 46 H 1.09002 * 109.06097 * 104.87440 * 26 25 24 47 47 H 1.08999 * 109.63967 * 171.47798 * 28 27 26 48 48 H 1.09002 * 109.64307 * 50.85463 * 28 27 26 49 49 H 1.09002 * 109.45655 * 283.37846 * 29 24 22 50 50 H 1.09002 * 109.45302 * 43.31394 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6240 8 7 4.1552 -1.3363 -0.1793 9 6 5.4834 -0.8026 0.1512 10 6 6.0564 -1.5675 1.3164 11 8 5.4211 -2.4689 1.8215 12 7 7.2748 -1.2500 1.7972 13 6 7.7963 -1.9462 2.8569 14 1 7.2306 -2.7488 3.3066 15 6 9.0526 -1.6192 3.3522 16 7 9.7411 -0.6430 2.8047 17 14 9.7629 -2.5674 4.7966 18 1 8.7971 -3.6098 5.2275 19 1 11.0364 -3.2123 4.3871 20 1 10.0203 -1.6344 5.9227 21 7 2.0184 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3571 23 8 1.8582 1.1618 2.4116 24 6 2.6369 -0.7118 3.5584 25 6 2.7596 -0.0302 4.6831 26 6 3.2535 -0.6542 5.9576 27 8 3.2151 -2.0789 5.8553 28 6 3.8428 -2.5742 4.6664 29 6 2.9862 -2.1717 3.4626 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -1.7716 -1.2056 34 1 1.6054 -0.2618 -2.1370 35 1 3.7722 -2.2742 -2.6699 36 1 3.6264 -0.6888 -3.4657 37 1 5.1508 -1.1486 -2.6698 38 1 4.1998 -2.3269 -0.3655 39 1 6.1420 -0.9074 -0.7109 40 1 5.3960 0.2513 0.4157 41 1 7.7830 -0.5294 1.3931 42 1 10.6183 -0.4150 3.1503 43 1 2.2491 -1.6318 1.1527 44 1 2.4903 1.0157 4.6878 45 1 2.6236 -0.3343 6.7876 46 1 4.2793 -0.3323 6.1374 47 1 3.9166 -3.6606 4.7165 48 1 4.8381 -2.1404 4.5696 49 1 2.0713 -2.7641 3.4534 50 1 3.5443 -2.3519 2.5438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134159718.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:03 Heat of formation + Delta-G solvation = -129.907231 kcal Electronic energy + Delta-G solvation = -32013.559738 eV Core-core repulsion = 27846.849846 eV Total energy + Delta-G solvation = -4166.709891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.20933 -40.09165 -39.71506 -38.36028 -36.13972 -35.68037 -34.70934 -33.19504 -32.72388 -31.88584 -31.01375 -27.91386 -27.58853 -26.99620 -25.60455 -24.75509 -23.08949 -21.75142 -21.53052 -20.92976 -19.82268 -19.36054 -18.45002 -17.64161 -17.51279 -16.93344 -16.76757 -16.38484 -16.23246 -16.04844 -15.89120 -15.62565 -15.41746 -15.25183 -14.81264 -14.66625 -14.38834 -14.15408 -13.91173 -13.59679 -13.52875 -13.50372 -13.39738 -13.27227 -13.01528 -12.91808 -12.75867 -12.57147 -12.34907 -12.26916 -12.17925 -12.09061 -11.75555 -11.68347 -11.59804 -11.37928 -11.08517 -10.45945 -10.21830 -10.05074 -9.89132 -9.78908 -9.11167 -8.40650 -5.86389 0.42360 1.37296 1.43360 1.55617 2.14506 2.30605 2.33264 2.49797 2.96667 3.01615 3.28829 3.61308 3.73709 3.80076 3.86366 4.00430 4.11304 4.28908 4.32192 4.36272 4.40499 4.42370 4.48195 4.50461 4.53417 4.64140 4.64401 4.65654 4.81098 4.85379 4.89898 4.98930 5.03512 5.03985 5.08510 5.09811 5.27433 5.31518 5.37561 5.41562 5.48418 5.64964 5.80127 5.97893 6.13218 6.17482 6.55605 6.68430 6.80514 7.21553 7.43616 7.66286 8.20400 8.77566 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.004743 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.839377 B = 5901.797721 C = 8026.088100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.057 0.943 4 C -0.104 4.104 5 C 0.082 3.918 6 H 0.067 0.933 7 C -0.174 4.174 8 N -0.661 5.661 9 C 0.066 3.934 10 C 0.446 3.554 11 O -0.587 6.587 12 N -0.581 5.581 13 C -0.312 4.312 14 H 0.088 0.912 15 C -0.017 4.017 16 N -0.928 5.928 17 Si 0.982 3.018 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.279 1.279 21 N -0.673 5.673 22 C 0.550 3.450 23 O -0.600 6.600 24 C -0.163 4.163 25 C -0.135 4.135 26 C 0.086 3.914 27 O -0.393 6.393 28 C 0.071 3.929 29 C -0.118 4.118 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.348 0.652 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.390 0.610 42 H 0.272 0.728 43 H 0.412 0.588 44 H 0.125 0.875 45 H 0.136 0.864 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.085 0.915 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 -1.004 -8.026 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.076 0.924 4 C -0.142 4.142 5 C -0.028 4.028 6 H 0.085 0.915 7 C -0.233 4.233 8 N -0.294 5.294 9 C -0.067 4.067 10 C 0.233 3.767 11 O -0.472 6.472 12 N -0.218 5.218 13 C -0.442 4.442 14 H 0.106 0.894 15 C -0.216 4.216 16 N -0.570 5.570 17 Si 0.807 3.193 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.205 1.205 21 N -0.322 5.322 22 C 0.339 3.661 23 O -0.485 6.485 24 C -0.166 4.166 25 C -0.156 4.156 26 C 0.010 3.990 27 O -0.312 6.312 28 C -0.006 4.006 29 C -0.154 4.154 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.168 0.832 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.222 0.778 42 H 0.082 0.918 43 H 0.251 0.749 44 H 0.143 0.857 45 H 0.154 0.846 46 H 0.085 0.915 47 H 0.122 0.878 48 H 0.053 0.947 49 H 0.104 0.896 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.537 -0.506 -7.059 17.073 hybrid contribution 2.019 -0.109 -0.313 2.046 sum -13.519 -0.615 -7.372 15.410 Atomic orbital electron populations 1.22137 0.94690 1.02611 1.02034 1.20938 0.93867 0.96389 0.84725 0.92427 1.21894 0.93583 1.02048 0.96648 1.21681 0.94984 0.97880 0.88252 0.91517 1.22415 1.00868 1.01924 0.98119 1.60254 1.20461 1.08379 1.40299 1.21447 0.91331 0.98531 0.95363 1.20601 0.82029 0.86764 0.87272 1.90349 1.60148 1.33921 1.62798 1.41967 1.16246 1.33108 1.30468 1.19672 1.00443 1.15029 1.09029 0.89390 1.25925 0.96669 0.97728 1.01288 1.69692 1.13782 1.30293 1.43220 0.85012 0.78184 0.78191 0.77931 1.19133 1.20190 1.20499 1.45762 1.63905 1.14602 1.07976 1.18486 0.77017 0.85903 0.84736 1.90681 1.54152 1.17347 1.86294 1.21111 1.04030 0.97658 0.93799 1.23733 0.95717 1.00916 0.95191 1.21667 1.01377 0.80457 0.95462 1.88022 1.79657 1.20758 1.42798 1.22492 0.94487 0.99891 0.83694 1.21190 1.00990 0.91029 1.02219 0.89736 0.94856 0.91347 0.89859 0.87585 0.91619 0.90479 0.93715 0.83241 0.92497 0.90548 0.77786 0.91826 0.74907 0.85702 0.84632 0.91532 0.87814 0.94693 0.89644 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.15 3.17 2.57 44.99 0.12 3.29 16 3 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 4 C -0.10 -1.55 4.54 30.59 0.14 -1.42 16 5 C 0.08 1.52 2.59 44.91 0.12 1.63 16 6 H 0.07 1.41 7.80 -2.39 -0.02 1.39 16 7 C -0.17 -2.63 9.16 71.98 0.66 -1.97 16 8 N -0.66 -16.27 3.48 -495.57 -1.72 -17.99 16 9 C 0.07 2.05 5.97 85.55 0.51 2.56 16 10 C 0.45 18.52 7.82 87.66 0.69 19.21 16 11 O -0.59 -25.63 12.92 -3.07 -0.04 -25.67 16 12 N -0.58 -27.79 5.29 -306.99 -1.62 -29.41 16 13 C -0.31 -16.53 9.68 84.04 0.81 -15.72 16 14 H 0.09 4.86 7.16 -2.91 -0.02 4.84 16 15 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 16 N -0.93 -49.89 13.05 21.66 0.28 -49.60 16 17 Si 0.98 42.26 29.55 68.60 2.03 44.29 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 21 N -0.67 -18.00 3.74 -446.14 -1.67 -19.67 16 22 C 0.55 18.95 7.69 86.57 0.67 19.62 16 23 O -0.60 -24.19 15.72 -4.05 -0.06 -24.26 16 24 C -0.16 -5.58 5.86 -18.59 -0.11 -5.69 16 25 C -0.14 -4.47 9.58 24.59 0.24 -4.24 16 26 C 0.09 2.55 7.04 71.10 0.50 3.05 16 27 O -0.39 -13.16 10.83 -148.98 -1.61 -14.77 16 28 C 0.07 2.47 6.88 72.03 0.50 2.96 16 29 C -0.12 -3.80 5.25 29.80 0.16 -3.64 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.06 0.91 8.13 -2.39 -0.02 0.90 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 0.79 7.45 -2.39 -0.02 0.77 16 38 H 0.35 8.52 8.17 -89.70 -0.73 7.79 16 39 H 0.06 1.62 7.43 -2.39 -0.02 1.60 16 40 H 0.08 2.49 8.06 -2.38 -0.02 2.48 16 41 H 0.39 18.62 7.90 -92.70 -0.73 17.89 16 42 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.41 10.44 5.90 -92.71 -0.55 9.89 16 44 H 0.13 4.13 7.29 -2.91 -0.02 4.11 16 45 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 46 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 48 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 49 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.12 4.19 4.25 -2.39 -0.01 4.18 16 Total: -1.00 -64.64 400.46 0.67 -63.96 By element: Atomic # 1 Polarization: 57.21 SS G_CDS: -1.04 Total: 56.17 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.13 Total: 16.96 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -4.73 Total: -116.68 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -1.72 Total: -64.70 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -64.64 0.67 -63.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134159718.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.943 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds