Wall clock time and date at job start Sat Apr 11 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47258 * 2 1 4 4 C 1.53003 * 109.47059 * 240.00114 * 2 1 3 5 5 C 1.53008 * 109.46722 * 174.99639 * 4 2 1 6 6 H 1.09001 * 109.46784 * 55.00262 * 5 4 2 7 7 C 1.53003 * 109.46845 * 174.99924 * 5 4 2 8 8 N 1.46498 * 109.47262 * 294.99825 * 5 4 2 9 9 C 1.34774 * 119.99586 * 155.00052 * 8 5 4 10 10 O 1.21281 * 120.00281 * 0.02562 * 9 8 5 11 11 C 1.50698 * 119.99937 * 179.97438 * 9 8 5 12 12 N 1.46501 * 109.47302 * 179.97438 * 11 9 8 13 13 C 1.33884 * 122.75641 * 90.02975 * 12 11 9 14 14 O 1.21221 * 125.39565 * 359.73039 * 13 12 11 15 15 C 1.51314 * 109.20132 * 180.02562 * 13 12 11 16 16 C 1.54226 * 103.56033 * 0.02562 * 15 13 12 17 17 C 1.53002 * 110.60385 * 241.48731 * 16 15 13 18 18 C 1.52994 * 110.61018 * 118.51532 * 16 15 13 19 19 C 1.33875 * 122.76632 * 270.02883 * 12 11 9 20 20 O 1.21221 * 125.39767 * 359.97438 * 19 12 11 21 21 N 1.46503 * 109.47214 * 120.00150 * 2 1 3 22 22 C 1.36930 * 119.99931 * 274.99998 * 21 2 1 23 23 H 1.08007 * 120.00380 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00382 * 179.97438 * 22 21 2 25 25 N 1.31619 * 120.00555 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99525 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47416 * 89.99940 * 26 24 22 28 28 H 1.48506 * 109.47105 * 210.00088 * 26 24 22 29 29 H 1.48497 * 109.47207 * 329.99537 * 26 24 22 30 30 H 1.09004 * 109.46829 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46950 * 299.99735 * 1 2 3 32 32 H 1.08997 * 109.47279 * 60.00480 * 1 2 3 33 33 H 1.08999 * 109.47219 * 55.00079 * 4 2 1 34 34 H 1.09000 * 109.47357 * 294.99494 * 4 2 1 35 35 H 1.08993 * 109.47409 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47279 * 300.00229 * 7 5 4 37 37 H 1.09000 * 109.46746 * 60.00217 * 7 5 4 38 38 H 0.96994 * 119.99866 * 335.00430 * 8 5 4 39 39 H 1.08999 * 109.46856 * 60.00466 * 11 9 8 40 40 H 1.08994 * 109.47318 * 300.00369 * 11 9 8 41 41 H 1.09000 * 110.60562 * 118.51746 * 15 13 12 42 42 H 1.08999 * 110.60532 * 241.47708 * 15 13 12 43 43 H 1.09001 * 109.47182 * 175.58888 * 17 16 15 44 44 H 1.09009 * 109.46699 * 295.58191 * 17 16 15 45 45 H 1.08994 * 109.47857 * 55.58195 * 17 16 15 46 46 H 1.09000 * 109.47489 * 304.41539 * 18 16 15 47 47 H 1.09005 * 109.46916 * 64.41334 * 18 16 15 48 48 H 1.09000 * 109.47292 * 184.40987 * 18 16 15 49 49 H 0.96994 * 120.00157 * 95.00120 * 21 2 1 50 50 H 0.96991 * 120.00260 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 1 3.9954 -0.9921 -0.3868 7 6 4.0853 -1.4382 -2.4925 8 7 3.9479 0.7895 -1.4925 9 6 5.1611 1.2137 -1.0867 10 8 5.9359 0.4341 -0.5740 11 6 5.5555 2.6564 -1.2711 12 7 6.9100 2.8626 -0.7526 13 6 8.0051 2.7194 -1.5095 14 8 8.0131 2.4064 -2.6805 15 6 9.2313 3.0030 -0.6695 16 6 8.6490 3.3378 0.7189 17 6 9.0154 4.7664 1.1262 18 6 9.1402 2.3352 1.7649 19 6 7.1548 3.2097 0.5170 20 8 6.3129 3.3917 1.3700 21 7 2.0184 -0.6906 1.1962 22 6 2.1492 -0.0076 2.3757 23 1 1.8919 1.0403 2.4244 24 6 2.6114 -0.6620 3.5092 25 7 2.7366 -0.0056 4.6432 26 14 3.0557 -2.4745 3.4253 27 1 4.4885 -2.6167 3.0620 28 1 2.8155 -3.1048 4.7483 29 1 2.2161 -3.1429 2.3990 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6054 -0.2617 -2.1370 34 1 1.7517 -1.7715 -1.2056 35 1 5.1715 -1.3616 -2.5382 36 1 3.8002 -2.4818 -2.3595 37 1 3.6547 -1.0592 -3.4193 38 1 3.3284 1.4129 -1.9028 39 1 4.8583 3.2956 -0.7294 40 1 5.5298 2.9074 -2.3314 41 1 9.8707 2.1220 -0.6145 42 1 9.7823 3.8538 -1.0701 43 1 8.5308 5.0103 2.0715 44 1 10.0965 4.8454 1.2411 45 1 8.6802 5.4612 0.3562 46 1 8.8925 1.3237 1.4432 47 1 10.2206 2.4267 1.8766 48 1 8.6575 2.5411 2.7203 49 1 2.2491 -1.6317 1.1526 50 1 3.0599 -0.4628 5.4351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134391700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:16 Heat of formation + Delta-G solvation = -124.400754 kcal Electronic energy + Delta-G solvation = -31473.164700 eV Core-core repulsion = 27306.693587 eV Total energy + Delta-G solvation = -4166.471113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.27049 -40.84704 -39.81038 -38.51931 -37.31415 -36.38290 -36.02753 -34.15322 -32.62404 -31.14261 -30.48100 -28.39617 -28.30673 -27.64057 -25.44317 -25.32309 -23.26542 -22.19118 -21.75141 -21.36099 -20.35009 -19.77045 -18.80292 -18.41428 -17.43736 -17.34687 -17.03097 -16.68927 -16.32683 -16.13145 -15.83518 -15.39518 -15.31204 -15.28873 -15.06338 -14.70688 -14.65072 -14.50740 -14.39167 -14.07800 -13.59599 -13.51674 -13.45170 -13.18892 -13.11787 -13.06910 -12.88179 -12.69602 -12.68960 -12.53520 -12.34727 -12.10926 -12.05790 -11.93599 -11.76824 -11.68859 -11.48800 -11.44208 -11.06745 -11.01444 -10.68695 -10.11403 -9.30577 -8.04301 -5.34782 0.42204 1.18746 1.27110 1.34124 1.38410 1.48448 1.64393 2.25076 2.43907 2.96006 3.12065 3.28580 3.35655 3.58354 3.61309 3.76308 3.81145 3.91305 4.02557 4.03976 4.05865 4.23636 4.29447 4.46778 4.55103 4.60700 4.60885 4.70927 4.72434 4.75816 4.77849 4.85780 4.87012 4.95950 4.97495 5.04536 5.14627 5.17720 5.27461 5.27708 5.33019 5.52581 5.57501 5.66375 5.76288 6.20481 6.21436 6.42961 6.65554 7.07867 7.16908 7.86256 8.01595 9.18142 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.004112 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.667792 B = 6807.690401 C = 8240.515502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 H 0.041 0.959 4 C -0.119 4.119 5 C 0.141 3.859 6 H 0.045 0.955 7 C -0.150 4.150 8 N -0.699 5.699 9 C 0.494 3.506 10 O -0.580 6.580 11 C 0.075 3.925 12 N -0.563 5.563 13 C 0.529 3.471 14 O -0.512 6.512 15 C -0.134 4.134 16 C -0.089 4.089 17 C -0.129 4.129 18 C -0.136 4.136 19 C 0.522 3.478 20 O -0.514 6.514 21 N -0.749 5.749 22 C -0.214 4.214 23 H 0.051 0.949 24 C -0.068 4.068 25 N -0.986 5.986 26 Si 0.947 3.053 27 H -0.295 1.295 28 H -0.293 1.293 29 H -0.244 1.244 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.129 0.871 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.055 0.945 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.118 0.882 48 H 0.051 0.949 49 H 0.361 0.639 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.669 8.046 -19.362 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.059 0.941 4 C -0.157 4.157 5 C 0.037 3.963 6 H 0.063 0.937 7 C -0.208 4.208 8 N -0.352 5.352 9 C 0.280 3.720 10 O -0.460 6.460 11 C -0.050 4.050 12 N -0.305 5.305 13 C 0.321 3.679 14 O -0.386 6.386 15 C -0.173 4.173 16 C -0.092 4.092 17 C -0.186 4.186 18 C -0.193 4.193 19 C 0.312 3.688 20 O -0.386 6.386 21 N -0.393 5.393 22 C -0.345 4.345 23 H 0.069 0.931 24 C -0.259 4.259 25 N -0.638 5.638 26 Si 0.776 3.224 27 H -0.222 1.222 28 H -0.220 1.220 29 H -0.169 1.169 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.253 0.747 39 H 0.147 0.853 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.075 0.925 44 H 0.131 0.869 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.136 0.864 48 H 0.070 0.930 49 H 0.194 0.806 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.697 7.593 -19.057 23.614 hybrid contribution -0.539 -0.978 0.891 1.429 sum 11.157 6.615 -18.166 22.322 Atomic orbital electron populations 1.22276 0.97060 1.01409 1.00848 1.20533 0.92996 0.95338 0.85333 0.94068 1.22145 0.92296 1.02834 0.98474 1.20949 0.95971 0.80936 0.98466 0.93675 1.22075 1.00151 1.00418 0.98153 1.45758 1.15808 1.11924 1.61703 1.21205 0.82616 0.90887 0.77339 1.90690 1.52798 1.57708 1.44797 1.21732 0.84383 0.93900 1.04990 1.46560 1.08796 1.61643 1.13513 1.21500 0.86621 0.73179 0.86569 1.90733 1.86982 1.44919 1.16001 1.22840 0.95043 1.08518 0.90866 1.21589 0.87895 1.01791 0.97901 1.21826 1.04845 0.89711 1.02197 1.21823 1.04176 0.96439 0.96855 1.21756 0.93947 0.72839 0.80215 1.90820 1.54217 1.47661 1.45940 1.42819 1.79952 1.09263 1.07220 1.18937 1.34136 0.93954 0.87522 0.93115 1.25433 1.02810 1.02181 0.95438 1.69883 1.55237 1.37483 1.01150 0.85513 0.77918 0.81703 0.77297 1.22198 1.21986 1.16857 0.92987 0.95663 0.90085 0.86735 0.89463 0.94817 0.90614 0.89678 0.74652 0.85332 0.82813 0.84245 0.81787 0.92548 0.86897 0.90787 0.93886 0.86374 0.92957 0.80612 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 9.49 71.98 0.68 -4.24 16 2 C 0.17 5.87 2.84 44.99 0.13 5.99 16 3 H 0.04 1.57 7.56 -2.38 -0.02 1.55 16 4 C -0.12 -3.03 4.29 30.60 0.13 -2.90 16 5 C 0.14 4.26 2.52 45.00 0.11 4.37 16 6 H 0.04 1.88 7.06 -2.39 -0.02 1.86 16 7 C -0.15 -3.64 9.48 71.98 0.68 -2.96 16 8 N -0.70 -19.47 4.45 -442.52 -1.97 -21.44 16 9 C 0.49 16.89 7.86 87.66 0.69 17.58 16 10 O -0.58 -25.79 16.09 -3.03 -0.05 -25.84 16 11 C 0.07 1.97 6.03 85.63 0.52 2.49 16 12 N -0.56 -15.65 2.04 -760.73 -1.55 -17.21 16 13 C 0.53 12.75 8.08 87.99 0.71 13.46 16 14 O -0.51 -14.71 17.48 -2.85 -0.05 -14.76 16 15 C -0.13 -1.90 6.32 30.46 0.19 -1.71 16 16 C -0.09 -1.69 1.05 -52.32 -0.06 -1.75 16 17 C -0.13 -1.63 8.44 71.98 0.61 -1.03 16 18 C -0.14 -2.76 8.45 71.98 0.61 -2.15 16 19 C 0.52 15.89 6.74 87.99 0.59 16.49 16 20 O -0.51 -21.03 17.48 -2.85 -0.05 -21.08 16 21 N -0.75 -35.67 4.30 -322.92 -1.39 -37.06 16 22 C -0.21 -12.84 10.41 84.03 0.87 -11.97 16 23 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 24 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 25 N -0.99 -67.55 13.97 21.65 0.30 -67.25 16 26 Si 0.95 49.39 27.74 68.60 1.90 51.30 16 27 H -0.29 -15.76 7.11 99.48 0.71 -15.05 16 28 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 29 H -0.24 -11.23 6.52 99.48 0.65 -10.58 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.42 8.10 8.60 -92.71 -0.80 7.30 16 39 H 0.13 3.22 7.83 -2.39 -0.02 3.20 16 40 H 0.15 2.87 7.83 -2.39 -0.02 2.86 16 41 H 0.14 1.61 7.74 -2.39 -0.02 1.59 16 42 H 0.16 0.97 7.74 -2.39 -0.02 0.95 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 47 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 48 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.36 16.86 5.66 -92.71 -0.52 16.33 16 50 H 0.25 16.67 8.31 -92.71 -0.77 15.90 16 Total: -1.00 -96.00 412.15 3.65 -92.34 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.44 Total: 33.12 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 6.94 Total: 27.86 kcal Atomic # 7 Polarization: -138.34 SS G_CDS: -4.61 Total: -142.95 kcal Atomic # 8 Polarization: -61.52 SS G_CDS: -0.15 Total: -61.67 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.90 Total: 51.30 kcal Total: -96.00 3.65 -92.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134391700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.057 kcal (2) G-P(sol) polarization free energy of solvation -95.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds