Wall clock time and date at job start Sat Apr 11 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21278 * 119.99715 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00002 * 179.97438 * 18 17 2 21 21 N 1.46497 * 109.47134 * 180.02562 * 20 18 17 22 22 C 1.33876 * 122.76672 * 90.02563 * 21 20 18 23 23 O 1.21222 * 125.39237 * 359.97438 * 22 21 20 24 24 C 1.51309 * 109.21113 * 179.97438 * 22 21 20 25 25 C 1.54231 * 103.55650 * 359.97438 * 24 22 21 26 26 C 1.53003 * 110.60530 * 118.51228 * 25 24 22 27 27 C 1.52998 * 110.60950 * 241.48553 * 25 24 22 28 28 C 1.33883 * 122.76016 * 269.73144 * 21 20 18 29 29 O 1.21225 * 125.39421 * 359.97438 * 28 21 20 30 30 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 31 31 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 32 32 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 34 34 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 35 35 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 36 36 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 38 38 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 39 39 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 40 40 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 41 41 H 1.09000 * 109.47377 * 300.00300 * 20 18 17 42 42 H 1.09002 * 109.47170 * 60.00352 * 20 18 17 43 43 H 1.09002 * 110.60810 * 118.51244 * 24 22 21 44 44 H 1.08994 * 110.60998 * 241.32611 * 24 22 21 45 45 H 1.08996 * 109.46897 * 60.00894 * 26 25 24 46 46 H 1.09005 * 109.46915 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.47196 * 300.00315 * 26 25 24 48 48 H 1.08996 * 109.46989 * 59.99432 * 27 25 24 49 49 H 1.08996 * 109.47251 * 180.02562 * 27 25 24 50 50 H 1.08999 * 109.46837 * 299.99834 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8582 1.1583 2.4117 20 6 2.6487 -0.7288 3.5878 21 7 2.6976 0.2124 4.7093 22 6 1.6645 0.4057 5.5385 23 8 0.5925 -0.1558 5.4673 24 6 2.0468 1.4361 6.5785 25 6 3.4957 1.8082 6.2031 26 6 3.5951 3.2928 5.8463 27 6 4.4537 1.4619 7.3446 28 6 3.7811 0.9459 4.9929 29 8 4.8250 0.9236 4.3769 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 1.6054 -0.2618 -2.1369 34 1 1.7515 -1.7716 -1.2055 35 1 3.6263 -0.6888 -3.4657 36 1 5.1507 -1.1479 -2.6701 37 1 3.7721 -2.2742 -2.6699 38 1 3.6646 -2.0586 0.2387 39 1 4.4079 -2.8955 1.5989 40 1 2.2489 -1.6318 1.1527 41 1 1.9758 -1.5506 3.8326 42 1 3.6479 -1.1214 3.3987 43 1 1.3967 2.3084 6.5115 44 1 2.0063 1.0049 7.5787 45 1 3.2868 3.8934 6.7020 46 1 4.6250 3.5352 5.5840 47 1 2.9445 3.5071 4.9985 48 1 4.4052 0.3921 7.5476 49 1 5.4706 1.7324 7.0603 50 1 4.1677 2.0148 8.2393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134391703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:08 Heat of formation + Delta-G solvation = -90.741775 kcal Electronic energy + Delta-G solvation = -32398.771955 eV Core-core repulsion = 28233.760406 eV Total energy + Delta-G solvation = -4165.011550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.94975 -39.32265 -38.38960 -36.97166 -35.99310 -34.97007 -34.27871 -32.54990 -30.92755 -29.40964 -28.28514 -27.57727 -27.05093 -26.38039 -24.06685 -23.48206 -21.92697 -20.88158 -20.39032 -19.87567 -19.01092 -17.45419 -17.20883 -16.93345 -16.12634 -15.93177 -15.63960 -15.11373 -14.84635 -14.50018 -14.24642 -14.07131 -14.01203 -13.80205 -13.66161 -13.50245 -13.23029 -13.13041 -12.97464 -12.48877 -12.34839 -12.23018 -12.09594 -11.84220 -11.77637 -11.69496 -11.61933 -11.56051 -11.22023 -11.07596 -10.70860 -10.49317 -10.42798 -10.26426 -10.16169 -10.05127 -9.93242 -9.68589 -9.14978 -9.08415 -8.94786 -8.49074 -7.00691 -6.08860 -3.08589 1.74546 2.56947 2.93212 3.14207 3.56517 3.67318 3.75326 3.77663 4.00121 4.24472 4.35027 4.63893 4.71705 4.96370 4.97886 5.18265 5.30451 5.33025 5.36452 5.40692 5.43117 5.46327 5.56485 5.59728 5.63340 5.65837 5.66568 5.73870 5.79419 5.88561 5.92151 5.95105 5.97831 6.05977 6.07706 6.16408 6.29314 6.34180 6.45180 6.50094 6.79117 6.96837 7.03868 7.05089 7.53408 7.83458 7.93152 8.05730 8.69613 8.73872 9.19409 10.04860 10.20290 11.37604 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.005270 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.144179 B = 5311.749896 C = 7170.443629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.083 0.917 4 C -0.134 4.134 5 C 0.175 3.825 6 H 0.048 0.952 7 C -0.162 4.162 8 N -0.727 5.727 9 C -0.314 4.314 10 H 0.061 0.939 11 C -0.037 4.037 12 N -0.945 5.945 13 Si 1.069 2.931 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.291 1.291 17 N -0.694 5.694 18 C 0.521 3.479 19 O -0.554 6.554 20 C 0.072 3.928 21 N -0.551 5.551 22 C 0.532 3.468 23 O -0.492 6.492 24 C -0.149 4.149 25 C -0.096 4.096 26 C -0.132 4.132 27 C -0.133 4.133 28 C 0.529 3.471 29 O -0.448 6.448 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.360 0.640 39 H 0.246 0.754 40 H 0.400 0.600 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 6.912 6.711 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.101 0.899 4 C -0.173 4.173 5 C 0.065 3.935 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.372 5.372 9 C -0.445 4.445 10 H 0.079 0.921 11 C -0.233 4.233 12 N -0.592 5.592 13 Si 0.900 3.100 14 H -0.212 1.212 15 H -0.228 1.228 16 H -0.218 1.218 17 N -0.347 5.347 18 C 0.306 3.694 19 O -0.433 6.433 20 C -0.052 4.052 21 N -0.293 5.293 22 C 0.322 3.678 23 O -0.364 6.364 24 C -0.188 4.188 25 C -0.100 4.100 26 C -0.189 4.189 27 C -0.190 4.190 28 C 0.316 3.684 29 O -0.316 6.316 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.194 0.806 39 H 0.058 0.942 40 H 0.237 0.763 41 H 0.131 0.869 42 H 0.166 0.834 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.968 7.253 7.379 12.475 hybrid contribution -1.116 -0.458 -1.398 1.846 sum -8.084 6.796 5.981 12.137 Atomic orbital electron populations 1.22198 0.96078 1.01714 1.02001 1.20816 0.92566 0.97689 0.84252 0.89899 1.22226 0.97874 1.00543 0.96631 1.20213 0.89461 0.95880 0.87929 0.93360 1.22400 1.01647 1.00204 0.98013 1.42472 1.19106 1.39948 1.35674 1.19988 0.94108 1.15960 1.14475 0.92100 1.25502 1.05354 0.96938 0.95551 1.71006 1.13971 1.30752 1.43477 0.83372 0.74844 0.75870 0.75868 1.21206 1.22773 1.21771 1.45844 1.66041 1.14069 1.08730 1.20421 0.76746 0.87307 0.84904 1.90615 1.51294 1.15917 1.85449 1.21764 1.07789 0.91507 0.84174 1.46255 1.15862 1.39370 1.27804 1.20722 0.82788 0.82167 0.82169 1.90730 1.22497 1.50314 1.72903 1.22665 0.96433 0.99839 0.99895 1.21458 0.95815 0.97751 0.94954 1.21742 1.03867 0.91001 1.02333 1.21765 0.99119 1.02262 0.95885 1.20698 0.82732 0.79594 0.85372 1.90873 1.25208 1.62745 1.52769 0.92421 0.92019 0.92738 0.90635 0.91796 0.94494 0.92789 0.93730 0.80580 0.94243 0.76294 0.86941 0.83419 0.86253 0.86281 0.90851 0.90920 0.91594 0.91839 0.90780 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.15 0.35 -1.91 16 2 C 0.15 2.51 2.57 -67.93 -0.17 2.33 16 3 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 4 C -0.13 -2.04 4.43 -26.73 -0.12 -2.16 16 5 C 0.17 3.33 2.89 -67.93 -0.20 3.14 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 8 N -0.73 -16.57 3.84 -53.43 -0.21 -16.78 16 9 C -0.31 -8.44 9.93 -15.06 -0.15 -8.59 16 10 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 11 C -0.04 -1.02 5.50 -17.43 -0.10 -1.12 16 12 N -0.94 -26.46 13.40 55.49 0.74 -25.72 16 13 Si 1.07 26.66 29.92 -169.99 -5.09 21.57 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 N -0.69 -12.73 3.80 -53.81 -0.20 -12.93 16 18 C 0.52 10.68 7.86 -10.98 -0.09 10.59 16 19 O -0.55 -12.55 16.09 5.56 0.09 -12.46 16 20 C 0.07 1.40 6.04 -5.20 -0.03 1.37 16 21 N -0.55 -9.83 2.04 -116.63 -0.24 -10.06 16 22 C 0.53 8.38 8.07 -11.09 -0.09 8.29 16 23 O -0.49 -8.89 17.48 5.61 0.10 -8.79 16 24 C -0.15 -1.58 6.31 -26.94 -0.17 -1.75 16 25 C -0.10 -1.16 1.05 -154.71 -0.16 -1.32 16 26 C -0.13 -1.41 8.46 37.16 0.31 -1.10 16 27 C -0.13 -1.28 8.44 37.16 0.31 -0.97 16 28 C 0.53 9.43 6.74 -11.08 -0.07 9.35 16 29 O -0.45 -10.00 17.47 5.60 0.10 -9.91 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.36 8.13 4.54 -40.82 -0.19 7.95 16 39 H 0.25 6.61 6.77 -40.82 -0.28 6.33 16 40 H 0.40 7.20 6.51 -40.82 -0.27 6.94 16 41 H 0.11 1.93 7.83 -51.93 -0.41 1.53 16 42 H 0.15 3.32 7.53 -51.93 -0.39 2.93 16 43 H 0.12 1.05 7.74 -51.93 -0.40 0.65 16 44 H 0.12 0.92 7.74 -51.93 -0.40 0.52 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -34.33 408.77 -6.83 -41.16 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -8.27 Total: 14.10 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -0.02 Total: 13.65 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.10 Total: -65.49 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: 0.29 Total: -31.16 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -5.09 Total: 21.57 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.33 -6.83 -41.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134391703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.579 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds