Wall clock time and date at job start Sat Apr 11 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 C 1.52996 * 109.46829 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47187 * 179.97438 * 12 11 9 14 14 N 1.46500 * 109.47323 * 179.97438 * 13 12 11 15 15 C 1.33879 * 122.76049 * 269.70954 * 14 13 12 16 16 O 1.21223 * 125.39855 * 359.97438 * 15 14 13 17 17 C 1.51318 * 109.20322 * 179.84189 * 15 14 13 18 18 C 1.54222 * 103.55517 * 0.38773 * 17 15 14 19 19 C 1.33872 * 122.76220 * 89.99813 * 14 13 12 20 20 O 1.21232 * 125.39398 * 359.97438 * 19 14 13 21 21 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 2 1 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 2 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 2 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 34 34 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 35 35 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 36 36 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 37 37 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 38 38 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 39 39 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 40 40 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 41 41 H 1.09001 * 109.47479 * 299.99853 * 12 11 9 42 42 H 1.09000 * 109.47204 * 60.00187 * 12 11 9 43 43 H 1.09001 * 109.46931 * 300.00359 * 13 12 11 44 44 H 1.09000 * 109.46756 * 60.00084 * 13 12 11 45 45 H 1.08999 * 110.79652 * 241.78155 * 17 15 14 46 46 H 1.08992 * 110.54822 * 118.87672 * 17 15 14 47 47 H 1.09008 * 110.60827 * 241.25912 * 18 17 15 48 48 H 1.09004 * 110.60724 * 118.29334 * 18 17 15 49 49 H 0.97001 * 120.00384 * 265.00562 * 21 2 1 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8717 0.7288 13 6 7.3695 4.3370 0.9144 14 7 8.7244 4.5429 0.3967 15 6 9.8187 4.4060 1.1558 16 8 9.8256 4.1045 2.3299 17 6 11.0457 4.6842 0.3151 18 6 10.4641 5.0188 -1.0736 19 6 8.9699 4.8889 -0.8731 20 8 8.1285 5.0692 -1.7270 21 7 2.0184 -0.6906 -1.1962 22 6 2.1437 -0.0088 -2.3771 23 1 1.8868 1.0391 -2.4256 24 6 2.6010 -0.6645 -3.5120 25 7 2.9136 -1.9417 -3.4530 26 14 2.7727 0.2657 -5.1227 27 1 3.7294 1.3878 -4.9468 28 1 3.2759 -0.6541 -6.1744 29 1 1.4488 0.8028 -5.5277 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.6547 -1.0595 3.4193 36 1 3.8001 -2.4820 2.3594 37 1 5.1714 -1.3611 2.5385 38 1 3.3285 1.4128 1.9028 39 1 4.8579 3.2952 0.7277 40 1 5.5291 2.9083 2.3303 41 1 7.6673 2.2330 1.2707 42 1 6.9953 2.6201 -0.3314 43 1 6.6720 4.9753 0.3722 44 1 7.3439 4.5890 1.9746 45 1 11.6855 3.8035 0.2609 46 1 11.5983 5.5345 0.7145 47 1 10.8147 4.3045 -1.8186 48 1 10.7252 6.0366 -1.3638 49 1 2.2490 -1.6318 -1.1527 50 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134541194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:16 Heat of formation + Delta-G solvation = -108.567568 kcal Electronic energy + Delta-G solvation = -29975.433600 eV Core-core repulsion = 25809.649066 eV Total energy + Delta-G solvation = -4165.784534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.13938 -39.55372 -38.82660 -36.92585 -36.19413 -35.05837 -34.35155 -32.41585 -32.01563 -30.56547 -28.55862 -27.21749 -26.52108 -26.26878 -23.59568 -22.96751 -22.68318 -20.96056 -20.09435 -19.74382 -19.65846 -17.70383 -17.31819 -17.15878 -16.77577 -16.47395 -15.84510 -15.58566 -15.02977 -14.67478 -14.50450 -14.34974 -14.25515 -14.07247 -13.90394 -13.69647 -13.47801 -13.18024 -12.97991 -12.81102 -12.53345 -12.22333 -12.04364 -11.87879 -11.84002 -11.78477 -11.69790 -11.54576 -10.99162 -10.90408 -10.87609 -10.76857 -10.56741 -10.37665 -10.31995 -10.20120 -10.03339 -9.86088 -9.56833 -9.43597 -8.82467 -8.63092 -6.87174 -5.68085 -2.95983 1.21019 2.19509 2.41430 3.03285 3.49974 3.52053 3.54866 3.55482 3.71040 3.85231 4.03611 4.42384 4.67043 4.70693 4.73109 4.80360 5.02967 5.10791 5.16501 5.16819 5.19417 5.20514 5.29959 5.42902 5.46926 5.51781 5.59615 5.67564 5.73885 5.92111 5.94387 5.98538 6.05379 6.17053 6.18879 6.33016 6.39876 6.48041 6.53754 6.60997 6.77580 6.87032 6.98889 7.01068 7.11159 7.47386 7.76373 7.87717 8.50377 8.63699 9.61588 10.19075 10.53131 11.54646 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009843 B = 0.003005 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.049956 B = 9315.894522 C =11260.505453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.105 0.895 7 C -0.160 4.160 8 N -0.718 5.718 9 C 0.514 3.486 10 O -0.534 6.534 11 C -0.136 4.136 12 C -0.119 4.119 13 C 0.098 3.902 14 N -0.573 5.573 15 C 0.526 3.474 16 O -0.482 6.482 17 C -0.157 4.157 18 C -0.158 4.158 19 C 0.523 3.477 20 O -0.473 6.473 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.066 0.934 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.902 3.098 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.393 0.607 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.257 14.567 13.906 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.219 4.219 8 N -0.369 5.369 9 C 0.299 3.701 10 O -0.410 6.410 11 C -0.177 4.177 12 C -0.157 4.157 13 C -0.023 4.023 14 N -0.316 5.316 15 C 0.315 3.685 16 O -0.354 6.354 17 C -0.197 4.197 18 C -0.197 4.197 19 C 0.311 3.689 20 O -0.344 6.344 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.084 0.916 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.214 1.214 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.227 0.773 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.357 14.035 13.555 23.096 hybrid contribution -0.356 0.418 -0.764 0.941 sum 12.000 14.453 12.791 22.727 Atomic orbital electron populations 1.22463 0.99613 1.00778 0.99721 1.20215 0.91488 0.95536 0.86580 0.93670 1.22161 0.93837 1.02148 0.98761 1.21010 0.94991 0.80346 0.99752 0.87751 1.22177 1.01442 1.00179 0.98057 1.45970 1.16502 1.11593 1.62804 1.20393 0.81957 0.89917 0.77802 1.90724 1.51133 1.56681 1.42498 1.21527 0.97989 0.95045 1.03119 1.21616 0.96014 0.94436 1.03661 1.21865 0.80987 0.98463 1.00972 1.46764 1.09748 1.62024 1.13084 1.20835 0.85966 0.74765 0.86910 1.90783 1.86620 1.43472 1.14528 1.22475 0.96952 1.06267 0.94018 1.22487 0.91660 1.06678 0.98902 1.20870 0.92410 0.74544 0.81031 1.90835 1.52759 1.45855 1.44928 1.42385 1.77995 1.10606 1.05175 1.19107 1.36649 0.93622 0.87233 0.91593 1.24687 1.02205 0.95920 0.97919 1.69640 1.51016 1.08584 1.28799 0.86341 0.77672 0.78753 0.83896 1.21292 1.21725 1.21415 0.92927 0.93560 0.94758 0.92121 0.90726 0.93220 0.91828 0.92624 0.77323 0.88546 0.88983 0.90626 0.90184 0.88638 0.88813 0.86040 0.86230 0.85990 0.86171 0.78371 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.49 37.16 0.35 -2.58 16 2 C 0.17 3.29 2.84 -67.93 -0.19 3.10 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.02 4.29 -26.73 -0.11 -2.13 16 5 C 0.14 2.36 2.52 -67.93 -0.17 2.19 16 6 H 0.10 2.28 7.05 -51.93 -0.37 1.92 16 7 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 8 N -0.72 -10.45 4.45 -53.80 -0.24 -10.69 16 9 C 0.51 8.38 7.79 -10.98 -0.09 8.29 16 10 O -0.53 -11.36 15.64 5.56 0.09 -11.27 16 11 C -0.14 -1.58 5.70 -27.88 -0.16 -1.74 16 12 C -0.12 -1.50 4.83 -26.73 -0.13 -1.63 16 13 C 0.10 0.98 5.56 -4.04 -0.02 0.96 16 14 N -0.57 -5.65 2.55 -115.34 -0.29 -5.94 16 15 C 0.53 4.79 8.08 -11.08 -0.09 4.71 16 16 O -0.48 -5.99 17.47 5.61 0.10 -5.89 16 17 C -0.16 -0.70 7.03 -26.94 -0.19 -0.89 16 18 C -0.16 -0.76 7.03 -26.94 -0.19 -0.95 16 19 C 0.52 5.20 8.08 -11.09 -0.09 5.11 16 20 O -0.47 -6.70 17.48 5.60 0.10 -6.60 16 21 N -0.72 -17.93 4.49 -53.43 -0.24 -18.17 16 22 C -0.23 -6.63 9.93 -15.06 -0.15 -6.78 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 26 Si 0.90 23.36 29.55 -169.99 -5.02 18.34 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.39 4.43 8.60 -40.82 -0.35 4.07 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.10 0.92 7.83 -51.93 -0.41 0.51 16 44 H 0.09 0.82 7.82 -51.93 -0.41 0.41 16 45 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.12 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.38 10.25 7.80 -40.82 -0.32 9.94 16 50 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 417.14 15.07 6.29 6.29 Total: -1.00 -38.40 417.14 -8.02 -46.42 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -8.55 Total: 10.43 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.97 Total: 5.32 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.05 Total: -63.03 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.28 Total: -23.76 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -38.40 -8.02 -46.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134541194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.146 kcal (2) G-P(sol) polarization free energy of solvation -38.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds