Wall clock time and date at job start Sat Apr 11 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 C 1.52996 * 109.46829 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47187 * 179.97438 * 12 11 9 14 14 N 1.46500 * 109.47323 * 179.97438 * 13 12 11 15 15 C 1.33879 * 122.76049 * 269.70954 * 14 13 12 16 16 O 1.21223 * 125.39855 * 359.97438 * 15 14 13 17 17 C 1.51318 * 109.20322 * 179.84189 * 15 14 13 18 18 C 1.54222 * 103.55517 * 0.38773 * 17 15 14 19 19 C 1.33872 * 122.76220 * 89.99813 * 14 13 12 20 20 O 1.21232 * 125.39398 * 359.97438 * 19 14 13 21 21 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 2 1 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 2 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 2 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 33 33 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 34 34 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 35 35 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 36 36 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 37 37 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 38 38 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 39 39 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 40 40 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 41 41 H 1.09001 * 109.47479 * 299.99853 * 12 11 9 42 42 H 1.09000 * 109.47204 * 60.00187 * 12 11 9 43 43 H 1.09001 * 109.46931 * 300.00359 * 13 12 11 44 44 H 1.09000 * 109.46756 * 60.00084 * 13 12 11 45 45 H 1.08999 * 110.79652 * 241.78155 * 17 15 14 46 46 H 1.08992 * 110.54822 * 118.87672 * 17 15 14 47 47 H 1.09008 * 110.60827 * 241.25912 * 18 17 15 48 48 H 1.09004 * 110.60724 * 118.29334 * 18 17 15 49 49 H 0.97001 * 120.00384 * 265.00562 * 21 2 1 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8717 0.7288 13 6 7.3695 4.3370 0.9144 14 7 8.7244 4.5429 0.3967 15 6 9.8187 4.4060 1.1558 16 8 9.8256 4.1045 2.3299 17 6 11.0457 4.6842 0.3151 18 6 10.4641 5.0188 -1.0736 19 6 8.9699 4.8889 -0.8731 20 8 8.1285 5.0692 -1.7270 21 7 2.0184 -0.6906 -1.1962 22 6 2.1437 -0.0088 -2.3771 23 1 1.8868 1.0391 -2.4256 24 6 2.6010 -0.6645 -3.5120 25 7 2.9136 -1.9417 -3.4530 26 14 2.7727 0.2657 -5.1227 27 1 3.7294 1.3878 -4.9468 28 1 3.2759 -0.6541 -6.1744 29 1 1.4488 0.8028 -5.5277 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.6547 -1.0595 3.4193 36 1 3.8001 -2.4820 2.3594 37 1 5.1714 -1.3611 2.5385 38 1 3.3285 1.4128 1.9028 39 1 4.8579 3.2952 0.7277 40 1 5.5291 2.9083 2.3303 41 1 7.6673 2.2330 1.2707 42 1 6.9953 2.6201 -0.3314 43 1 6.6720 4.9753 0.3722 44 1 7.3439 4.5890 1.9746 45 1 11.6855 3.8035 0.2609 46 1 11.5983 5.5345 0.7145 47 1 10.8147 4.3045 -1.8186 48 1 10.7252 6.0366 -1.3638 49 1 2.2490 -1.6318 -1.1527 50 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134541194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:15 Heat of formation + Delta-G solvation = -137.065828 kcal Electronic energy + Delta-G solvation = -29976.669377 eV Core-core repulsion = 25809.649066 eV Total energy + Delta-G solvation = -4167.020311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.86297 -40.88128 -39.66518 -38.40873 -37.08171 -36.15436 -35.74901 -34.03416 -33.17516 -31.86698 -30.43104 -28.12760 -27.58433 -27.11272 -25.68199 -24.02923 -23.30805 -22.26336 -21.39353 -21.17570 -20.51027 -19.30288 -18.55002 -18.04710 -17.58036 -17.54575 -17.17412 -16.78682 -16.51336 -15.81588 -15.68097 -15.54743 -15.31379 -15.22497 -14.94318 -14.86855 -14.66800 -14.51782 -14.25094 -13.75909 -13.62841 -13.51021 -13.32864 -13.22136 -12.99294 -12.94605 -12.83737 -12.78177 -12.67228 -12.27005 -12.23034 -12.13163 -11.93637 -11.83101 -11.65049 -11.56681 -11.42596 -11.09848 -10.96853 -10.92450 -10.74895 -9.95611 -8.96196 -7.93839 -5.19008 0.47650 1.40046 1.44098 1.48565 1.48884 1.71807 1.74673 2.34426 2.54472 3.20929 3.26515 3.40586 3.62240 3.67060 3.80596 3.82156 3.83728 4.00686 4.11616 4.15967 4.26787 4.33020 4.35273 4.40829 4.54054 4.56755 4.61971 4.69876 4.74949 4.78382 4.82385 4.88434 4.91331 4.91948 4.94362 5.03541 5.09571 5.11429 5.23006 5.34532 5.42873 5.50624 5.62834 5.69620 5.81191 6.29613 6.29978 6.68529 6.72735 7.35062 7.41864 8.15956 8.35017 9.29962 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009843 B = 0.003005 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.049956 B = 9315.894522 C =11260.505453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.044 0.956 4 C -0.117 4.117 5 C 0.145 3.855 6 H 0.042 0.958 7 C -0.150 4.150 8 N -0.705 5.705 9 C 0.502 3.498 10 O -0.595 6.595 11 C -0.126 4.126 12 C -0.110 4.110 13 C 0.099 3.901 14 N -0.581 5.581 15 C 0.520 3.480 16 O -0.520 6.520 17 C -0.142 4.142 18 C -0.144 4.144 19 C 0.514 3.486 20 O -0.526 6.526 21 N -0.732 5.732 22 C -0.226 4.226 23 H 0.070 0.930 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.961 3.039 27 H -0.288 1.288 28 H -0.296 1.296 29 H -0.273 1.273 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.414 0.586 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.153 0.847 47 H 0.136 0.864 48 H 0.151 0.849 49 H 0.369 0.631 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.225 17.073 16.012 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.055 3.945 3 H 0.062 0.938 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.060 0.940 7 C -0.208 4.208 8 N -0.357 5.357 9 C 0.289 3.711 10 O -0.476 6.476 11 C -0.166 4.166 12 C -0.149 4.149 13 C -0.022 4.022 14 N -0.324 5.324 15 C 0.312 3.688 16 O -0.395 6.395 17 C -0.181 4.181 18 C -0.183 4.183 19 C 0.306 3.694 20 O -0.400 6.400 21 N -0.372 5.372 22 C -0.359 4.359 23 H 0.088 0.912 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.791 3.209 27 H -0.215 1.215 28 H -0.222 1.222 29 H -0.199 1.199 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.251 0.749 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.117 0.883 44 H 0.130 0.870 45 H 0.158 0.842 46 H 0.170 0.830 47 H 0.154 0.846 48 H 0.169 0.831 49 H 0.200 0.800 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.277 16.605 15.721 25.954 hybrid contribution -0.384 -0.342 -1.314 1.411 sum 11.893 16.264 14.407 24.769 Atomic orbital electron populations 1.22306 0.97708 1.00816 1.00753 1.20536 0.92631 0.95330 0.85987 0.93754 1.22066 0.92745 1.02116 0.98576 1.20792 0.95577 0.81567 0.98060 0.94014 1.22067 1.00193 1.00197 0.98349 1.45860 1.16395 1.11343 1.62065 1.21285 0.81731 0.91435 0.76609 1.90702 1.52985 1.58667 1.45253 1.21561 0.97287 0.91780 1.05937 1.21471 0.96685 0.96022 1.00698 1.21812 0.81886 0.96333 1.02177 1.47004 1.09995 1.61773 1.13587 1.21695 0.87045 0.73389 0.86685 1.90761 1.87195 1.45241 1.16264 1.22598 0.94869 1.08304 0.92340 1.22611 0.87196 1.08903 0.99601 1.21827 0.94429 0.72923 0.80216 1.90803 1.54721 1.48318 1.46194 1.42602 1.78250 1.10120 1.06220 1.19480 1.34213 0.93794 0.88388 0.91215 1.25432 1.03577 0.96823 1.01202 1.69797 1.53195 1.10070 1.29056 0.85392 0.77929 0.77287 0.80323 1.21511 1.22239 1.19926 0.95212 0.94033 0.90354 0.87342 0.90853 0.89756 0.91460 0.94653 0.74881 0.86743 0.84757 0.92520 0.94261 0.88271 0.87013 0.84212 0.82966 0.84574 0.83134 0.79962 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.49 71.98 0.68 -4.46 16 2 C 0.16 6.03 2.84 44.99 0.13 6.16 16 3 H 0.04 1.65 7.56 -2.39 -0.02 1.63 16 4 C -0.12 -3.35 4.29 30.60 0.13 -3.22 16 5 C 0.15 4.76 2.52 44.99 0.11 4.87 16 6 H 0.04 1.93 7.05 -2.39 -0.02 1.91 16 7 C -0.15 -4.09 9.48 71.98 0.68 -3.41 16 8 N -0.70 -19.79 4.45 -442.53 -1.97 -21.76 16 9 C 0.50 16.66 7.79 87.66 0.68 17.34 16 10 O -0.60 -27.06 15.64 -3.01 -0.05 -27.11 16 11 C -0.13 -2.82 5.70 29.85 0.17 -2.65 16 12 C -0.11 -2.91 4.83 30.59 0.15 -2.76 16 13 C 0.10 1.99 5.56 86.38 0.48 2.47 16 14 N -0.58 -11.34 2.55 -756.64 -1.93 -13.27 16 15 C 0.52 8.93 8.08 87.99 0.71 9.64 16 16 O -0.52 -12.64 17.47 -2.85 -0.05 -12.69 16 17 C -0.14 -0.83 7.03 30.46 0.21 -0.62 16 18 C -0.14 -1.03 7.03 30.46 0.21 -0.82 16 19 C 0.51 10.08 8.08 87.99 0.71 10.79 16 20 O -0.53 -15.38 17.48 -2.88 -0.05 -15.43 16 21 N -0.73 -37.19 4.49 -322.94 -1.45 -38.64 16 22 C -0.23 -13.02 9.93 84.03 0.83 -12.19 16 23 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 25 N -0.97 -62.65 13.06 21.65 0.28 -62.36 16 26 Si 0.96 49.32 29.55 68.60 2.03 51.35 16 27 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 28 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 29 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 8.06 8.60 -92.71 -0.80 7.26 16 39 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 42 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 43 H 0.10 1.90 7.83 -2.39 -0.02 1.88 16 44 H 0.11 1.82 7.82 -2.39 -0.02 1.80 16 45 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.14 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.15 0.24 8.14 -2.38 -0.02 0.22 16 49 H 0.37 20.57 7.80 -92.71 -0.72 19.84 16 50 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -92.23 417.14 2.60 -89.63 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.58 Total: 33.41 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.37 Total: 16.87 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -5.07 Total: -136.03 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -0.15 Total: -55.22 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.35 kcal Total: -92.23 2.60 -89.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134541194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.439 kcal (2) G-P(sol) polarization free energy of solvation -92.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds