Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 H 1.09001 * 109.46968 * 305.00340 * 5 4 2 7 7 C 1.52996 * 109.47161 * 184.99876 * 5 4 2 8 8 N 1.46503 * 109.46987 * 64.99735 * 5 4 2 9 9 C 1.34780 * 120.00069 * 205.00005 * 8 5 4 10 10 O 1.21282 * 119.99513 * 0.02562 * 9 8 5 11 11 C 1.50694 * 119.99808 * 180.02562 * 9 8 5 12 12 H 1.08998 * 115.51584 * 34.62892 * 11 9 8 13 13 C 1.53003 * 117.42972 * 179.97438 * 11 9 8 14 14 H 1.08999 * 119.80602 * 354.35141 * 13 11 9 15 15 C 1.54483 * 118.06555 * 198.08132 * 13 11 9 16 16 O 1.44429 * 104.80283 * 321.12989 * 15 13 11 17 17 C 1.44427 * 105.27642 * 319.48876 * 16 15 13 18 18 C 1.53005 * 117.43022 * 249.34399 * 11 9 8 19 19 H 1.08997 * 119.80667 * 4.63993 * 18 11 9 20 20 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 21 21 C 1.46901 * 110.99793 * 275.00325 * 20 2 1 22 22 C 1.50701 * 109.46921 * 179.97438 * 21 20 2 23 23 O 1.21294 * 119.99849 * 0.02562 * 22 21 20 24 24 N 1.34780 * 119.99795 * 179.97438 * 22 21 20 25 25 C 1.37101 * 119.99707 * 180.02562 * 24 22 21 26 26 H 1.08002 * 119.99704 * 359.97438 * 25 24 22 27 27 C 1.38941 * 119.99927 * 180.02562 * 25 24 22 28 28 N 1.31417 * 120.00180 * 359.97438 * 27 25 24 29 29 Si 1.86800 * 120.00273 * 180.02562 * 27 25 24 30 30 H 1.48496 * 109.46986 * 359.97438 * 29 27 25 31 31 H 1.48494 * 109.47457 * 119.99901 * 29 27 25 32 32 H 1.48501 * 109.47104 * 239.99973 * 29 27 25 33 33 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 35 35 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 36 36 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 37 37 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 38 38 H 1.09003 * 109.47242 * 60.00105 * 7 5 4 39 39 H 1.09004 * 109.46882 * 180.02562 * 7 5 4 40 40 H 1.08999 * 109.47153 * 299.99764 * 7 5 4 41 41 H 0.97005 * 120.00187 * 25.00288 * 8 5 4 42 42 H 1.08994 * 110.36832 * 79.96107 * 15 13 11 43 43 H 1.08997 * 110.37201 * 202.30471 * 15 13 11 44 44 H 1.08999 * 110.36922 * 159.34380 * 17 16 15 45 45 H 1.09000 * 110.36916 * 281.56958 * 17 16 15 46 46 H 1.00898 * 110.99995 * 38.95403 * 20 2 1 47 47 H 1.09002 * 109.47401 * 59.99808 * 21 20 2 48 48 H 1.09001 * 109.46874 * 299.99821 * 21 20 2 49 49 H 0.96995 * 120.00011 * 0.02562 * 24 22 21 50 50 H 0.97000 * 119.99884 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2677 7 6 4.0645 -1.2251 -2.6239 8 7 4.1537 -1.3341 -0.1823 9 6 5.3748 -0.9910 0.2735 10 8 5.9859 -0.0852 -0.2527 11 6 5.9806 -1.7329 1.4369 12 1 5.7448 -2.7957 1.4901 13 6 7.3697 -1.2951 1.9057 14 1 7.9177 -0.5388 1.3437 15 6 8.1831 -2.2737 2.7815 16 8 7.2102 -2.8762 3.6627 17 6 6.3288 -1.7995 4.0495 18 6 6.1213 -0.9761 2.7592 19 1 5.7195 0.0329 2.8514 20 7 2.0196 -0.6925 1.1995 21 6 2.0823 0.2227 2.3469 22 6 2.5872 -0.5217 3.5561 23 8 2.8677 -1.6987 3.4703 24 7 2.7280 0.1207 4.7326 25 6 3.1878 -0.5564 5.8325 26 1 3.4368 -1.6046 5.7562 27 6 3.3325 0.1056 7.0454 28 7 3.0291 1.3809 7.1383 29 14 3.9597 -0.8167 8.5439 30 1 4.2283 -2.2306 8.1783 31 1 5.2130 -0.1830 9.0265 32 1 2.9357 -0.7697 9.6184 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 -0.3633 0.5137 -0.8900 36 1 1.7516 -1.7715 -1.2055 37 1 1.6054 -0.2618 -2.1369 38 1 3.6264 -0.6887 -3.4657 39 1 5.1509 -1.1485 -2.6696 40 1 3.7724 -2.2742 -2.6698 41 1 3.6647 -2.0584 0.2388 42 1 8.6559 -3.0349 2.1610 43 1 8.9335 -1.7329 3.3581 44 1 5.3773 -2.1965 4.4031 45 1 6.7942 -1.1871 4.8219 46 1 1.4495 -1.4979 1.4101 47 1 1.0869 0.6164 2.5525 48 1 2.7587 1.0463 2.1182 49 1 2.5041 1.0619 4.8010 50 1 3.1305 1.8431 7.9850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135231324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -107.767943 kcal Electronic energy + Delta-G solvation = -31957.258711 eV Core-core repulsion = 27791.508851 eV Total energy + Delta-G solvation = -4165.749860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69668 -40.30518 -39.92479 -38.34286 -36.14371 -35.65198 -35.22682 -33.17146 -32.70501 -31.17298 -29.62144 -27.91329 -27.58986 -27.32248 -25.58209 -23.70313 -21.90304 -21.65070 -21.57607 -20.88981 -20.67611 -19.78508 -18.64821 -17.62309 -17.32634 -16.96429 -16.68177 -16.36209 -16.23844 -16.16839 -15.96732 -15.66861 -15.43886 -15.26782 -14.74274 -14.60969 -14.33241 -14.05966 -13.81346 -13.55096 -13.49916 -13.44767 -13.31169 -13.07995 -12.93636 -12.77263 -12.72959 -12.58000 -12.50577 -12.25894 -12.19395 -12.09363 -11.69893 -11.60832 -11.40119 -11.27263 -11.16501 -10.83744 -10.49684 -10.16997 -9.89130 -9.85332 -9.10397 -8.38114 -5.83336 1.37827 1.44419 1.56315 1.56537 2.18194 2.22753 2.32340 2.73892 2.98939 3.05198 3.31503 3.60804 3.67077 3.70913 3.75518 3.86430 3.93371 4.11075 4.20777 4.29021 4.35564 4.39955 4.44044 4.48950 4.50886 4.55395 4.64012 4.65484 4.69854 4.76901 4.81003 4.88788 4.90174 4.97809 4.99063 5.03768 5.06769 5.08914 5.28675 5.31079 5.41936 5.51515 5.76364 5.80590 5.99854 6.19584 6.54429 6.70403 6.80316 7.24038 7.45033 7.68971 8.23096 8.80061 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.004798 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.119393 B = 5834.563272 C = 8170.711152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 H 0.067 0.933 4 C -0.104 4.104 5 C 0.148 3.852 6 H 0.058 0.942 7 C -0.156 4.156 8 N -0.675 5.675 9 C 0.550 3.450 10 O -0.593 6.593 11 C -0.133 4.133 12 H 0.119 0.881 13 C -0.168 4.168 14 H 0.131 0.869 15 C 0.071 3.929 16 O -0.390 6.390 17 C 0.085 3.915 18 C -0.148 4.148 19 H 0.098 0.902 20 N -0.660 5.660 21 C 0.066 3.934 22 C 0.450 3.550 23 O -0.595 6.595 24 N -0.580 5.580 25 C -0.305 4.305 26 H 0.085 0.915 27 C -0.014 4.014 28 N -0.926 5.926 29 Si 0.976 3.024 30 H -0.269 1.269 31 H -0.277 1.277 32 H -0.278 1.278 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.412 0.588 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.346 0.654 47 H 0.055 0.945 48 H 0.079 0.921 49 H 0.390 0.610 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 -3.145 -16.444 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 H 0.086 0.914 4 C -0.142 4.142 5 C 0.043 3.957 6 H 0.076 0.924 7 C -0.215 4.215 8 N -0.324 5.324 9 C 0.336 3.664 10 O -0.475 6.475 11 C -0.154 4.154 12 H 0.137 0.863 13 C -0.186 4.186 14 H 0.149 0.851 15 C -0.005 4.005 16 O -0.309 6.309 17 C 0.008 3.992 18 C -0.168 4.168 19 H 0.116 0.884 20 N -0.292 5.292 21 C -0.067 4.067 22 C 0.237 3.763 23 O -0.479 6.479 24 N -0.218 5.218 25 C -0.435 4.435 26 H 0.103 0.897 27 C -0.213 4.213 28 N -0.569 5.569 29 Si 0.801 3.199 30 H -0.194 1.194 31 H -0.203 1.203 32 H -0.204 1.204 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.165 0.835 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.222 0.778 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.574 -3.346 -16.823 17.162 hybrid contribution -1.095 0.607 1.689 2.102 sum -0.521 -2.739 -15.134 15.388 Atomic orbital electron populations 1.22422 0.95866 1.02655 1.02452 1.21691 0.93356 0.97674 0.90084 0.91441 1.21888 0.92382 1.02390 0.97516 1.20918 0.93626 0.95856 0.85271 0.92375 1.22136 1.00532 1.01917 0.96885 1.45756 1.16187 1.37306 1.33129 1.19414 0.81971 0.82338 0.82647 1.90608 1.63236 1.32707 1.60997 1.21915 0.99425 1.00392 0.93656 0.86336 1.24096 0.89459 1.03257 1.01810 0.85072 1.23153 0.90840 0.96116 0.90366 1.89128 1.43406 1.32190 1.66182 1.22735 0.94050 0.88125 0.94292 1.23442 1.03003 0.99989 0.90322 0.88360 1.60248 1.57788 1.08840 1.02316 1.21460 0.99953 0.95409 0.89902 1.20544 0.83134 0.88124 0.84508 1.90498 1.55259 1.17080 1.85058 1.41944 1.59074 1.12343 1.08395 1.19579 1.40423 0.95657 0.87868 0.89744 1.25831 0.97983 0.96357 1.01091 1.69687 1.49875 1.09733 1.27592 0.85098 0.77962 0.78520 0.78299 1.19382 1.20267 1.20358 0.91776 0.93751 0.90417 0.90028 0.87629 0.89823 0.94616 0.91434 0.75063 0.86571 0.89514 0.89942 0.91377 0.83468 0.92710 0.90325 0.77757 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 9.16 71.98 0.66 -2.09 16 2 C 0.08 1.55 2.59 44.91 0.12 1.67 16 3 H 0.07 1.43 7.80 -2.39 -0.02 1.42 16 4 C -0.10 -1.58 4.54 30.60 0.14 -1.44 16 5 C 0.15 3.15 2.57 44.99 0.12 3.27 16 6 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 7 C -0.16 -2.85 9.48 71.98 0.68 -2.17 16 8 N -0.67 -17.73 3.80 -442.53 -1.68 -19.41 16 9 C 0.55 18.04 7.57 87.65 0.66 18.70 16 10 O -0.59 -22.69 16.01 -3.04 -0.05 -22.73 16 11 C -0.13 -4.36 5.56 -11.54 -0.06 -4.42 16 12 H 0.12 3.86 8.06 -2.39 -0.02 3.84 16 13 C -0.17 -5.10 6.69 -9.76 -0.07 -5.16 16 14 H 0.13 3.94 7.82 -2.39 -0.02 3.93 16 15 C 0.07 1.91 7.53 72.49 0.55 2.46 16 16 O -0.39 -13.55 11.31 -148.98 -1.69 -15.23 16 17 C 0.08 3.21 7.53 72.48 0.55 3.76 16 18 C -0.15 -5.38 6.95 -9.76 -0.07 -5.45 16 19 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 20 N -0.66 -16.84 3.48 -495.56 -1.72 -18.57 16 21 C 0.07 2.08 5.97 85.56 0.51 2.59 16 22 C 0.45 19.02 7.82 87.66 0.69 19.70 16 23 O -0.59 -27.77 15.78 -3.07 -0.05 -27.81 16 24 N -0.58 -27.61 5.29 -306.98 -1.62 -29.23 16 25 C -0.31 -16.08 9.68 84.04 0.81 -15.27 16 26 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 27 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 28 N -0.93 -49.35 13.05 21.66 0.28 -49.07 16 29 Si 0.98 42.28 29.55 68.60 2.03 44.31 16 30 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 31 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 32 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 33 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 34 H 0.04 0.81 7.45 -2.39 -0.02 0.79 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.41 10.64 7.59 -92.70 -0.70 9.93 16 42 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.08 3.67 8.14 -2.39 -0.02 3.65 16 45 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.35 9.09 8.17 -89.70 -0.73 8.35 16 47 H 0.06 1.60 7.44 -2.39 -0.02 1.58 16 48 H 0.08 2.55 8.06 -2.39 -0.02 2.53 16 49 H 0.39 18.45 7.90 -92.71 -0.73 17.72 16 50 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -63.94 409.75 0.05 -63.90 By element: Atomic # 1 Polarization: 59.18 SS G_CDS: -1.20 Total: 57.98 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 5.75 Total: 15.88 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.75 Total: -116.29 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -1.78 Total: -65.78 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -63.94 0.05 -63.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135231324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.871 kcal (2) G-P(sol) polarization free energy of solvation -63.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds