Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00347 * 2 1 4 4 H 1.09007 * 109.46891 * 30.00421 * 3 2 1 5 5 C 1.52994 * 109.47686 * 270.00159 * 3 2 1 6 6 C 1.53002 * 109.47124 * 149.99562 * 3 2 1 7 7 C 1.50697 * 109.47501 * 295.00684 * 6 3 2 8 8 O 1.21284 * 119.99711 * 359.97438 * 7 6 3 9 9 N 1.34778 * 120.00204 * 180.02562 * 7 6 3 10 10 C 1.47883 * 134.34630 * 180.02562 * 9 7 6 11 11 C 1.52384 * 85.59505 * 156.52097 * 10 9 7 12 12 C 1.47888 * 134.34054 * 0.02562 * 9 7 6 13 13 C 1.53645 * 116.37438 * 141.33896 * 11 10 9 14 14 C 1.54595 * 102.81162 * 95.34901 * 13 11 10 15 15 N 1.47557 * 107.32808 * 20.84196 * 14 13 11 16 16 C 1.46906 * 110.99755 * 123.21876 * 15 14 13 17 17 C 1.50699 * 109.47140 * 69.87674 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47138 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47229 * 119.99992 * 24 22 20 27 27 H 1.48497 * 109.47429 * 239.99972 * 24 22 20 28 28 C 1.48139 * 108.68546 * 0.87288 * 15 14 13 29 29 H 1.09001 * 109.47185 * 300.00013 * 1 2 3 30 30 H 1.09006 * 109.46939 * 59.99835 * 1 2 3 31 31 H 1.09000 * 109.47590 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47358 * 300.00149 * 5 3 2 33 33 H 1.09004 * 109.47094 * 59.99886 * 5 3 2 34 34 H 1.09005 * 109.47460 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47128 * 174.99958 * 6 3 2 36 36 H 1.09000 * 109.46767 * 55.01018 * 6 3 2 37 37 H 1.09001 * 113.85175 * 42.35924 * 10 9 7 38 38 H 1.08993 * 113.97112 * 270.70756 * 10 9 7 39 39 H 1.09003 * 113.85289 * 89.31112 * 12 9 7 40 40 H 1.09006 * 113.85438 * 317.64332 * 12 9 7 41 41 H 1.09001 * 110.74675 * 337.02116 * 13 11 10 42 42 H 1.09000 * 110.74971 * 213.67887 * 13 11 10 43 43 H 1.08999 * 109.87377 * 261.41250 * 14 13 11 44 44 H 1.08997 * 109.99576 * 140.34431 * 14 13 11 45 45 H 1.09004 * 109.47040 * 189.87611 * 16 15 14 46 46 H 1.09000 * 109.47033 * 309.87564 * 16 15 14 47 47 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.41105 * 96.34150 * 28 15 14 50 50 H 1.09008 * 110.40619 * 218.76786 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3589 1.2631 0.7214 7 6 3.1416 0.9233 2.1733 8 8 2.0185 0.7341 2.5903 9 7 4.1951 0.8308 3.0088 10 6 4.3498 0.5259 4.4476 11 6 5.7700 0.1081 4.0861 12 6 5.6566 0.9936 2.8514 13 6 6.8682 0.4795 5.0944 14 6 7.0043 -0.8062 5.9421 15 7 6.4529 -1.9187 5.1448 16 6 7.4500 -2.9825 4.9654 17 6 7.6864 -3.6766 6.2820 18 8 7.0832 -3.3204 7.2722 19 7 8.5681 -4.6931 6.3590 20 6 8.7827 -5.3249 7.5567 21 1 8.2457 -5.0078 8.4384 22 6 9.6913 -6.3732 7.6361 23 7 10.3444 -6.7593 6.5631 24 14 9.9844 -7.2336 9.2680 25 1 9.1313 -6.6146 10.3142 26 1 9.6412 -8.6725 9.1376 27 1 11.4131 -7.0981 9.6495 28 6 6.0019 -1.3877 3.8375 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.8829 1.0775 -1.9563 33 1 1.2569 1.8015 -1.9563 34 1 2.6607 2.7674 -1.4423 35 1 3.8427 2.2368 0.6444 36 1 3.9931 0.5050 0.2617 37 1 3.7232 -0.2961 4.7938 38 1 4.2990 1.4021 5.0938 39 1 6.0057 2.0144 3.0074 40 1 6.0557 0.5388 1.9447 41 1 6.5551 1.3194 5.7145 42 1 7.8033 0.7044 4.5814 43 1 6.4410 -0.7000 6.8692 44 1 8.0540 -0.9956 6.1661 45 1 7.0840 -3.7040 4.2349 46 1 8.3846 -2.5483 4.6106 47 1 9.0501 -4.9781 5.5671 48 1 10.9789 -7.4909 6.6186 49 1 6.7740 -1.5322 3.0818 50 1 5.0738 -1.8704 3.5309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147217377.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -71.297033 kcal Electronic energy + Delta-G solvation = -29648.146489 eV Core-core repulsion = 25483.978126 eV Total energy + Delta-G solvation = -4164.168362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11872 -39.38025 -38.35807 -37.67063 -36.26625 -33.84989 -33.17936 -31.67881 -31.10271 -29.52304 -28.37379 -27.34344 -26.83911 -26.29474 -25.17833 -23.95590 -21.79138 -21.17456 -19.76546 -19.10092 -18.74069 -17.81501 -17.27343 -17.07628 -16.44469 -16.01941 -15.75995 -15.62669 -15.37706 -14.90548 -14.68504 -14.50400 -14.23087 -13.93513 -13.77123 -13.46799 -13.37802 -13.18356 -12.92593 -12.88101 -12.54387 -12.36022 -12.29555 -12.14672 -11.88530 -11.78186 -11.68796 -11.46045 -11.33010 -11.12547 -11.04234 -11.00027 -10.85925 -10.54126 -10.32515 -10.19969 -9.89440 -9.75727 -9.48146 -8.87289 -8.42193 -7.93833 -7.86684 -6.39203 -3.79686 2.50868 2.58689 3.17994 3.28357 3.35675 3.53431 3.84390 3.94789 4.06350 4.19469 4.28791 4.40984 4.43605 4.69411 4.78960 4.82258 4.89106 5.05098 5.07437 5.09317 5.10803 5.17458 5.21085 5.26635 5.28351 5.31054 5.32632 5.45013 5.53391 5.55800 5.57163 5.63728 5.65732 5.70046 5.78598 5.79889 5.81885 5.92314 5.97119 6.10582 6.32293 6.44841 6.98937 7.25333 7.26928 7.52574 7.57898 8.03625 8.09513 8.65148 9.21391 9.57932 10.10101 10.78782 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.001913 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.786537 B =14631.147123 C =15102.696817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.100 3.900 4 H 0.067 0.933 5 C -0.175 4.175 6 C -0.135 4.135 7 C 0.537 3.463 8 O -0.534 6.534 9 N -0.647 5.647 10 C 0.129 3.871 11 C -0.103 4.103 12 C 0.116 3.884 13 C -0.130 4.130 14 C 0.058 3.942 15 N -0.505 5.505 16 C 0.041 3.959 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.069 3.931 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.052 0.948 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 19.868 -16.567 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.295 6.295 3 C 0.041 3.959 4 H 0.085 0.915 5 C -0.232 4.232 6 C -0.175 4.175 7 C 0.327 3.673 8 O -0.410 6.410 9 N -0.383 5.383 10 C 0.007 3.993 11 C -0.104 4.104 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.070 4.070 15 N -0.229 5.229 16 C -0.091 4.091 17 C 0.230 3.770 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.059 4.059 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.033 19.459 -15.559 27.248 hybrid contribution 1.186 -0.152 -0.249 1.222 sum -9.847 19.307 -15.808 26.826 Atomic orbital electron populations 1.22701 0.80952 1.02587 0.99620 1.87901 1.19860 1.26791 1.94926 1.21780 0.93499 0.85988 0.94608 0.91503 1.22301 1.02676 1.01597 0.96663 1.21794 0.99103 1.04188 0.92381 1.20206 0.83296 0.76355 0.87443 1.90704 1.22581 1.49831 1.77897 1.50210 1.06602 1.70601 1.10932 1.22923 0.93981 1.00374 0.81988 1.22424 0.95852 0.96382 0.95782 1.23042 0.79396 0.99771 0.98538 1.22645 0.97617 0.99374 0.97243 1.22770 0.99654 0.87383 0.97162 1.63317 1.37259 1.09355 1.12940 1.22083 0.93982 0.94979 0.98022 1.19747 0.83773 0.83772 0.89722 1.90521 1.51015 1.66891 1.37465 1.41871 1.37074 1.29760 1.11759 1.19741 1.21673 1.12469 0.88692 0.87901 1.25253 0.96506 0.97462 0.98860 1.69623 1.27321 1.29146 1.28395 0.85809 0.78057 0.78901 0.81628 1.19239 1.20790 1.20829 1.22626 1.00725 0.91057 0.91489 0.93592 0.94688 0.89904 0.91566 0.92127 0.91533 0.87940 0.88077 0.89186 0.89664 0.89251 0.89745 0.90329 0.90853 0.89847 0.92509 0.89479 0.93299 0.77561 0.91998 0.93006 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.82 101.05 1.09 1.44 16 2 O -0.38 -4.34 9.58 -49.64 -0.48 -4.82 16 3 C 0.10 0.88 2.27 -26.73 -0.06 0.82 16 4 H 0.07 0.62 7.60 -51.92 -0.39 0.23 16 5 C -0.17 -1.07 9.53 37.15 0.35 -0.72 16 6 C -0.13 -1.09 5.15 -27.88 -0.14 -1.24 16 7 C 0.54 6.39 7.94 -10.99 -0.09 6.30 16 8 O -0.53 -8.49 16.15 -8.86 -0.14 -8.64 16 9 N -0.65 -6.69 3.62 -186.85 -0.68 -7.37 16 10 C 0.13 1.40 8.14 -3.60 -0.03 1.37 16 11 C -0.10 -1.01 0.99 -154.85 -0.15 -1.16 16 12 C 0.12 0.84 7.98 -3.60 -0.03 0.81 16 13 C -0.13 -1.28 6.35 -25.56 -0.16 -1.44 16 14 C 0.06 0.86 5.67 -2.63 -0.01 0.84 16 15 N -0.50 -8.16 4.86 -233.13 -1.13 -9.29 16 16 C 0.04 0.72 5.03 -4.97 -0.02 0.70 16 17 C 0.44 10.48 7.43 -10.99 -0.08 10.40 16 18 O -0.58 -15.57 15.12 5.55 0.08 -15.49 16 19 N -0.57 -14.39 5.29 -10.96 -0.06 -14.45 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 23 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.07 0.84 6.09 -2.93 -0.02 0.83 16 29 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.03 0.25 7.87 -51.93 -0.41 -0.16 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.18 8.12 -51.93 -0.42 0.76 16 38 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.06 0.92 7.31 -51.93 -0.38 0.54 16 45 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 46 H 0.05 0.77 7.96 -51.93 -0.41 0.35 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.05 0.56 7.80 -51.93 -0.40 0.16 16 50 H 0.08 1.10 8.07 -51.92 -0.42 0.68 16 LS Contribution 408.50 15.07 6.16 6.16 Total: -1.00 -35.05 408.50 -8.70 -43.75 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.56 Total: 6.94 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 0.40 Total: 10.98 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -1.14 Total: -55.03 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.53 Total: -28.94 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.05 -8.70 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147217377.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.549 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds