Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00347 * 2 1 4 4 H 1.09007 * 109.46891 * 30.00421 * 3 2 1 5 5 C 1.52994 * 109.47686 * 270.00159 * 3 2 1 6 6 C 1.53002 * 109.47124 * 149.99562 * 3 2 1 7 7 C 1.50697 * 109.47501 * 295.00684 * 6 3 2 8 8 O 1.21284 * 119.99711 * 359.97438 * 7 6 3 9 9 N 1.34778 * 120.00204 * 180.02562 * 7 6 3 10 10 C 1.47883 * 134.34630 * 180.02562 * 9 7 6 11 11 C 1.52384 * 85.59505 * 156.52097 * 10 9 7 12 12 C 1.47888 * 134.34054 * 0.02562 * 9 7 6 13 13 C 1.53645 * 116.37438 * 141.33896 * 11 10 9 14 14 C 1.54595 * 102.81162 * 95.34901 * 13 11 10 15 15 N 1.47557 * 107.32808 * 20.84196 * 14 13 11 16 16 C 1.46906 * 110.99755 * 123.21876 * 15 14 13 17 17 C 1.50699 * 109.47140 * 69.87674 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47138 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47229 * 119.99992 * 24 22 20 27 27 H 1.48497 * 109.47429 * 239.99972 * 24 22 20 28 28 C 1.48139 * 108.68546 * 0.87288 * 15 14 13 29 29 H 1.09001 * 109.47185 * 300.00013 * 1 2 3 30 30 H 1.09006 * 109.46939 * 59.99835 * 1 2 3 31 31 H 1.09000 * 109.47590 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47358 * 300.00149 * 5 3 2 33 33 H 1.09004 * 109.47094 * 59.99886 * 5 3 2 34 34 H 1.09005 * 109.47460 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47128 * 174.99958 * 6 3 2 36 36 H 1.09000 * 109.46767 * 55.01018 * 6 3 2 37 37 H 1.09001 * 113.85175 * 42.35924 * 10 9 7 38 38 H 1.08993 * 113.97112 * 270.70756 * 10 9 7 39 39 H 1.09003 * 113.85289 * 89.31112 * 12 9 7 40 40 H 1.09006 * 113.85438 * 317.64332 * 12 9 7 41 41 H 1.09001 * 110.74675 * 337.02116 * 13 11 10 42 42 H 1.09000 * 110.74971 * 213.67887 * 13 11 10 43 43 H 1.08999 * 109.87377 * 261.41250 * 14 13 11 44 44 H 1.08997 * 109.99576 * 140.34431 * 14 13 11 45 45 H 1.09004 * 109.47040 * 189.87611 * 16 15 14 46 46 H 1.09000 * 109.47033 * 309.87564 * 16 15 14 47 47 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.41105 * 96.34150 * 28 15 14 50 50 H 1.09008 * 110.40619 * 218.76786 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3589 1.2631 0.7214 7 6 3.1416 0.9233 2.1733 8 8 2.0185 0.7341 2.5903 9 7 4.1951 0.8308 3.0088 10 6 4.3498 0.5259 4.4476 11 6 5.7700 0.1081 4.0861 12 6 5.6566 0.9936 2.8514 13 6 6.8682 0.4795 5.0944 14 6 7.0043 -0.8062 5.9421 15 7 6.4529 -1.9187 5.1448 16 6 7.4500 -2.9825 4.9654 17 6 7.6864 -3.6766 6.2820 18 8 7.0832 -3.3204 7.2722 19 7 8.5681 -4.6931 6.3590 20 6 8.7827 -5.3249 7.5567 21 1 8.2457 -5.0078 8.4384 22 6 9.6913 -6.3732 7.6361 23 7 10.3444 -6.7593 6.5631 24 14 9.9844 -7.2336 9.2680 25 1 9.1313 -6.6146 10.3142 26 1 9.6412 -8.6725 9.1376 27 1 11.4131 -7.0981 9.6495 28 6 6.0019 -1.3877 3.8375 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.8829 1.0775 -1.9563 33 1 1.2569 1.8015 -1.9563 34 1 2.6607 2.7674 -1.4423 35 1 3.8427 2.2368 0.6444 36 1 3.9931 0.5050 0.2617 37 1 3.7232 -0.2961 4.7938 38 1 4.2990 1.4021 5.0938 39 1 6.0057 2.0144 3.0074 40 1 6.0557 0.5388 1.9447 41 1 6.5551 1.3194 5.7145 42 1 7.8033 0.7044 4.5814 43 1 6.4410 -0.7000 6.8692 44 1 8.0540 -0.9956 6.1661 45 1 7.0840 -3.7040 4.2349 46 1 8.3846 -2.5483 4.6106 47 1 9.0501 -4.9781 5.5671 48 1 10.9789 -7.4909 6.6186 49 1 6.7740 -1.5322 3.0818 50 1 5.0738 -1.8704 3.5309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147217377.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -97.793855 kcal Electronic energy + Delta-G solvation = -29649.295477 eV Core-core repulsion = 25483.978126 eV Total energy + Delta-G solvation = -4165.317351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97761 -40.43652 -39.82194 -38.64385 -37.44541 -35.87529 -33.86690 -33.31185 -32.59062 -30.41668 -29.28485 -28.49402 -27.56836 -27.09430 -26.59899 -25.34600 -22.49296 -22.35693 -20.98624 -20.46821 -19.85882 -19.56006 -18.04387 -17.81628 -17.67306 -17.35106 -16.75563 -16.64882 -16.43573 -16.27694 -15.94241 -15.62818 -15.55370 -15.30590 -15.02660 -14.63389 -14.21905 -14.17978 -13.81229 -13.72086 -13.54616 -13.46237 -13.32951 -13.12293 -13.02243 -12.91428 -12.85403 -12.69667 -12.42644 -12.39529 -12.30684 -12.11822 -11.98993 -11.89593 -11.66814 -11.49500 -11.40324 -10.73433 -10.51199 -10.30690 -9.99405 -9.69125 -9.14633 -8.45998 -5.94302 1.36325 1.41317 1.55459 1.69182 1.82456 2.07537 2.28821 2.77571 2.89102 3.20709 3.26773 3.41330 3.43448 3.65268 3.77347 3.84771 4.03065 4.19205 4.27064 4.30401 4.33662 4.41950 4.44974 4.46507 4.53612 4.55521 4.57465 4.60436 4.64899 4.68431 4.71905 4.77580 4.80033 4.85657 4.89859 4.92302 4.94269 5.03053 5.06024 5.18125 5.31340 5.32941 5.41762 5.91192 6.09461 6.15761 6.31121 6.62415 6.75419 7.14534 7.19511 7.58304 8.14784 8.71693 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.001913 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.786537 B =14631.147123 C =15102.696817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.405 6.405 3 C 0.091 3.909 4 H 0.054 0.946 5 C -0.166 4.166 6 C -0.127 4.127 7 C 0.526 3.474 8 O -0.589 6.589 9 N -0.649 5.649 10 C 0.118 3.882 11 C -0.096 4.096 12 C 0.132 3.868 13 C -0.111 4.111 14 C 0.056 3.944 15 N -0.536 5.536 16 C 0.056 3.944 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.269 1.269 28 C 0.071 3.929 29 H 0.030 0.970 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.051 0.949 44 H 0.038 0.962 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.078 0.922 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 21.661 -18.898 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.324 6.324 3 C 0.033 3.967 4 H 0.072 0.928 5 C -0.224 4.224 6 C -0.166 4.166 7 C 0.318 3.682 8 O -0.469 6.469 9 N -0.384 5.384 10 C -0.004 4.004 11 C -0.098 4.098 12 C 0.010 3.990 13 C -0.149 4.149 14 C -0.072 4.072 15 N -0.260 5.260 16 C -0.075 4.075 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.200 1.200 26 H -0.197 1.197 27 H -0.194 1.194 28 C -0.056 4.056 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.121 0.879 46 H 0.094 0.906 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.222 21.265 -17.929 29.304 hybrid contribution 0.587 -0.726 0.533 1.075 sum -8.635 20.539 -17.397 28.268 Atomic orbital electron populations 1.22738 0.80420 1.02876 0.99884 1.87847 1.20713 1.28718 1.95168 1.22007 0.93589 0.84724 0.96377 0.92791 1.22238 1.02955 1.02715 0.94454 1.21876 0.99070 1.06389 0.89243 1.20984 0.82765 0.75496 0.89004 1.90679 1.24825 1.52346 1.79049 1.50338 1.08024 1.69678 1.10384 1.22971 0.94379 0.99972 0.83077 1.22303 0.94813 0.95221 0.97432 1.23266 0.76852 1.01015 0.97839 1.22558 0.98829 0.96976 0.96572 1.22684 0.97663 0.89788 0.97044 1.63145 1.37256 1.10061 1.15571 1.21904 0.95857 0.95518 0.94248 1.20862 0.82019 0.82799 0.91544 1.90491 1.52176 1.67837 1.39773 1.41937 1.37861 1.30413 1.11207 1.19666 1.23016 1.14209 0.89135 0.90547 1.26019 0.95659 0.97418 1.02275 1.69677 1.27311 1.29396 1.29790 0.84884 0.78257 0.77889 0.77374 1.19978 1.19724 1.19417 1.22619 1.00415 0.92522 0.90071 0.95157 0.92515 0.89713 0.91356 0.92172 0.89278 0.84292 0.86884 0.92848 0.88145 0.85813 0.87281 0.88564 0.88132 0.93052 0.94328 0.87922 0.90611 0.77025 0.91342 0.90427 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.82 113.37 1.23 1.93 16 2 O -0.40 -9.30 9.58 -135.20 -1.30 -10.59 16 3 C 0.09 1.49 2.27 30.59 0.07 1.56 16 4 H 0.05 1.00 7.60 -2.38 -0.02 0.98 16 5 C -0.17 -1.61 9.53 71.98 0.69 -0.92 16 6 C -0.13 -1.71 5.15 29.85 0.15 -1.56 16 7 C 0.53 11.97 7.94 87.66 0.70 12.67 16 8 O -0.59 -19.38 16.15 10.74 0.17 -19.20 16 9 N -0.65 -12.11 3.62 -863.46 -3.12 -15.23 16 10 C 0.12 2.50 8.14 85.91 0.70 3.20 16 11 C -0.10 -1.63 0.99 -52.16 -0.05 -1.68 16 12 C 0.13 1.29 7.98 85.90 0.69 1.98 16 13 C -0.11 -1.85 6.35 31.35 0.20 -1.65 16 14 C 0.06 1.65 5.67 86.72 0.49 2.14 16 15 N -0.54 -17.23 4.86 -891.50 -4.33 -21.56 16 16 C 0.06 1.94 5.03 85.56 0.43 2.37 16 17 C 0.44 21.33 7.43 87.66 0.65 21.98 16 18 O -0.62 -34.97 15.12 -3.06 -0.05 -35.01 16 19 N -0.58 -29.95 5.29 -306.99 -1.62 -31.57 16 20 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 24 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 C 0.07 1.61 6.09 86.20 0.53 2.14 16 29 H 0.03 0.64 8.08 -2.39 -0.02 0.63 16 30 H 0.06 0.78 7.87 -2.38 -0.02 0.77 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.59 7.87 -2.38 -0.02 0.57 16 34 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 1.51 8.12 -2.39 -0.02 1.49 16 38 H 0.10 1.79 8.04 -2.39 -0.02 1.77 16 39 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.11 0.64 8.12 -2.38 -0.02 0.62 16 41 H 0.10 1.32 7.99 -2.39 -0.02 1.30 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.04 1.25 7.31 -2.39 -0.02 1.23 16 45 H 0.10 3.22 8.07 -2.38 -0.02 3.20 16 46 H 0.08 2.23 7.96 -2.39 -0.02 2.21 16 47 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.08 1.39 7.80 -2.39 -0.02 1.38 16 50 H 0.06 1.70 8.07 -2.38 -0.02 1.68 16 Total: -1.00 -81.93 408.50 0.00 -81.93 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.20 Total: 29.78 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 7.74 Total: 25.60 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -8.79 Total: -118.03 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -1.17 Total: -64.81 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -81.93 0.00 -81.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147217377.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.866 kcal (2) G-P(sol) polarization free energy of solvation -81.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds