Wall clock time and date at job start Sat Apr 11 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35707 * 117.00136 * 2 1 4 4 C 1.41934 * 126.87980 * 180.29542 * 3 2 1 5 5 C 1.35271 * 103.95912 * 180.11776 * 4 3 2 6 6 C 1.50700 * 126.70974 * 179.88064 * 5 4 3 7 7 C 1.52992 * 109.47257 * 89.71217 * 6 5 4 8 8 C 1.50700 * 109.47257 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47706 * 34.99696 * 11 10 8 13 13 C 1.53005 * 109.47118 * 274.99773 * 11 10 8 14 14 C 1.53004 * 109.46982 * 155.00372 * 11 10 8 15 15 C 1.52999 * 109.46735 * 294.99676 * 14 11 10 16 16 C 1.52999 * 109.47222 * 180.02562 * 15 14 11 17 17 C 1.52998 * 109.47594 * 179.97438 * 16 15 14 18 18 N 1.46503 * 109.47537 * 179.97438 * 17 16 15 19 19 C 1.36936 * 120.00043 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99601 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99728 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99608 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47126 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46973 * 119.99874 * 23 21 19 26 26 H 1.48502 * 109.46693 * 239.99458 * 23 21 19 27 27 O 1.34085 * 106.58503 * 359.62002 * 5 4 3 28 28 N 1.20921 * 111.71409 * 0.26189 * 27 5 4 29 29 H 1.08997 * 109.47508 * 299.99959 * 1 2 3 30 30 H 1.09003 * 109.46856 * 60.00290 * 1 2 3 31 31 H 1.09007 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08002 * 128.02084 * 0.03401 * 4 3 2 33 33 H 1.09004 * 109.46932 * 329.70996 * 6 5 4 34 34 H 1.09005 * 109.47238 * 209.71374 * 6 5 4 35 35 H 1.09004 * 109.47330 * 60.00023 * 7 6 5 36 36 H 1.08997 * 109.47279 * 300.00509 * 7 6 5 37 37 H 0.96995 * 120.00015 * 359.72695 * 10 8 7 38 38 H 1.08996 * 109.47503 * 300.00392 * 13 11 10 39 39 H 1.08997 * 109.47041 * 60.00616 * 13 11 10 40 40 H 1.09005 * 109.46855 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.47373 * 54.99720 * 14 11 10 42 42 H 1.09001 * 109.47302 * 175.00215 * 14 11 10 43 43 H 1.09002 * 109.47226 * 300.00134 * 15 14 11 44 44 H 1.09002 * 109.47308 * 60.00186 * 15 14 11 45 45 H 1.09002 * 109.47060 * 300.00151 * 16 15 14 46 46 H 1.09002 * 109.46897 * 59.99849 * 16 15 14 47 47 H 1.09002 * 109.47056 * 300.00173 * 17 16 15 48 48 H 1.09002 * 109.47106 * 59.99997 * 17 16 15 49 49 H 0.97005 * 119.99355 * 0.02562 * 18 17 16 50 50 H 0.97000 * 119.99616 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4527 -0.0059 5 6 3.5397 2.8019 -0.0004 6 6 4.8088 3.6145 -0.0007 7 6 5.2381 3.8895 -1.4431 8 6 6.5070 4.7026 -1.4434 9 8 7.0179 5.0295 -0.3931 10 7 7.0740 5.0664 -2.6107 11 6 8.3077 5.8564 -2.6108 12 1 8.9319 5.5556 -1.7694 13 6 7.9624 7.3416 -2.4844 14 6 9.0654 5.6186 -3.9187 15 6 9.5193 4.1591 -3.9869 16 6 10.2775 3.9214 -5.2944 17 6 10.7319 2.4620 -5.3624 18 7 11.4574 2.2343 -6.6147 19 6 11.9620 0.9931 -6.8976 20 1 11.8255 0.1823 -6.1974 21 6 12.6498 0.7775 -8.0839 22 7 12.8166 1.7659 -8.9369 23 14 13.3388 -0.9155 -8.4696 24 1 13.0189 -1.8453 -7.3568 25 1 12.7334 -1.4214 -9.7276 26 1 14.8123 -0.8252 -8.6307 27 8 2.2851 3.2751 -0.0007 28 7 1.4700 2.3819 -0.0004 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.2447 0.7286 -0.0117 33 1 5.5948 3.0608 0.5131 34 1 4.6351 4.5600 0.5132 35 1 4.4522 4.4431 -1.9569 36 1 5.4119 2.9441 -1.9570 37 1 6.6676 4.8016 -3.4506 38 1 7.3382 7.6424 -3.3257 39 1 7.4227 7.5110 -1.5527 40 1 8.8804 7.9293 -2.4849 41 1 8.4104 5.8353 -4.7626 42 1 9.9368 6.2722 -3.9578 43 1 10.1742 3.9424 -3.1430 44 1 8.6479 3.5054 -3.9478 45 1 9.6229 4.1382 -6.1386 46 1 11.1488 4.5751 -5.3331 47 1 11.3867 2.2456 -4.5182 48 1 9.8608 1.8080 -5.3236 49 1 11.5803 2.9628 -7.2433 50 1 13.2969 1.6150 -9.7660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171021674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:46 Heat of formation + Delta-G solvation = -25.668047 kcal Electronic energy + Delta-G solvation = -28027.644683 eV Core-core repulsion = 23865.454942 eV Total energy + Delta-G solvation = -4162.189741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.28737 -40.18991 -39.23270 -37.17605 -35.38313 -35.00517 -33.32270 -33.20788 -31.80267 -30.72201 -30.08351 -28.03816 -27.46774 -25.57932 -24.17759 -23.79002 -22.27268 -21.56288 -20.94522 -20.71829 -20.61777 -18.45355 -18.08179 -17.24908 -17.10925 -17.00406 -16.49116 -16.00354 -15.88333 -15.46082 -15.06521 -14.73534 -14.50122 -14.35782 -13.98456 -13.85477 -13.47529 -13.31248 -13.11724 -12.94784 -12.89310 -12.71423 -12.62067 -12.34688 -12.29548 -11.88092 -11.78581 -11.48372 -11.35733 -11.28483 -11.01539 -10.83057 -10.72755 -10.41963 -10.32984 -10.21230 -9.97329 -9.89068 -9.67692 -9.61821 -9.28285 -8.86648 -6.90556 -5.75948 -3.04272 0.97981 1.86660 2.34145 2.37302 2.61836 3.01368 3.43465 3.48988 3.51390 3.79851 4.23524 4.36911 4.47356 4.51685 4.56908 4.63998 4.66949 4.69181 4.78686 4.86253 4.95749 4.98159 5.02554 5.08868 5.23304 5.35153 5.38184 5.42861 5.43939 5.54027 5.56219 5.60092 5.67539 5.76756 5.87359 5.93452 6.08119 6.19836 6.28909 6.35144 6.37653 6.45160 6.55580 6.88635 6.92597 7.24132 7.71162 7.83358 7.95765 8.43469 9.54312 10.13559 10.48002 11.47198 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.001788 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.791903 B =15657.528129 C =18448.258566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.284 6.284 3 C 0.209 3.791 4 C -0.230 4.230 5 C -0.001 4.001 6 C -0.025 4.025 7 C -0.142 4.142 8 C 0.517 3.483 9 O -0.542 6.542 10 N -0.721 5.721 11 C 0.140 3.860 12 H 0.089 0.911 13 C -0.163 4.163 14 C -0.128 4.128 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 O 0.100 5.900 28 N -0.411 5.411 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.180 0.820 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.402 0.598 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.247 7.116 19.173 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.190 6.190 3 C 0.011 3.989 4 C -0.252 4.252 5 C -0.065 4.065 6 C -0.063 4.063 7 C -0.182 4.182 8 C 0.303 3.697 9 O -0.419 6.419 10 N -0.373 5.373 11 C 0.036 3.964 12 H 0.107 0.893 13 C -0.221 4.221 14 C -0.166 4.166 15 C -0.152 4.152 16 C -0.164 4.164 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 O 0.039 5.961 28 N -0.138 5.138 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.197 0.803 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.236 0.764 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.033 0.967 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.993 7.288 19.948 32.042 hybrid contribution 0.622 -1.352 -1.032 1.811 sum -23.371 5.936 18.916 30.648 Atomic orbital electron populations 1.23076 0.76765 1.04187 1.02329 1.86207 1.22637 1.20889 1.89285 1.22050 0.90996 0.85716 1.00134 1.21864 0.94374 0.95782 1.13168 1.24328 0.88284 0.93246 1.00624 1.19924 0.88702 1.00564 0.97111 1.21682 0.96454 1.02031 0.98036 1.20427 0.85663 0.79692 0.83916 1.90723 1.64156 1.55818 1.31203 1.46125 1.27297 1.55292 1.08578 1.21059 0.85238 0.90585 0.99519 0.89283 1.22174 1.02209 0.95624 1.02121 1.21948 1.00354 0.98261 0.95990 1.21518 1.00094 0.95045 0.98517 1.21730 0.99765 0.98363 0.96530 1.20650 0.94292 0.92660 0.89929 1.42397 1.65646 1.10820 1.19034 1.19304 1.27523 0.88259 1.01888 0.91163 1.24752 1.01561 0.97660 0.97224 1.69671 1.47106 1.30501 1.11039 0.86110 0.78533 0.83730 0.77808 1.20556 1.21866 1.21857 1.84807 1.12262 1.30027 1.68973 1.74147 1.15624 0.96744 1.27292 0.92274 0.92213 0.87576 0.80250 0.87195 0.88140 0.88121 0.87900 0.76355 0.92494 0.92250 0.91523 0.91330 0.90204 0.91985 0.92141 0.92135 0.92054 0.96575 0.96653 0.78357 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.73 101.05 1.08 1.28 16 2 O -0.28 -2.67 10.57 -18.83 -0.20 -2.87 16 3 C 0.21 2.07 8.01 -16.65 -0.13 1.94 16 4 C -0.23 -1.83 11.11 -39.23 -0.44 -2.27 16 5 C 0.00 -0.01 6.73 -35.37 -0.24 -0.25 16 6 C -0.02 -0.14 5.07 -27.89 -0.14 -0.28 16 7 C -0.14 -0.76 5.68 -27.89 -0.16 -0.92 16 8 C 0.52 4.31 7.79 -10.98 -0.09 4.23 16 9 O -0.54 -6.47 15.64 5.56 0.09 -6.39 16 10 N -0.72 -5.36 4.53 -53.80 -0.24 -5.61 16 11 C 0.14 1.20 2.57 -67.93 -0.17 1.03 16 12 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 13 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 14 C -0.13 -1.14 4.75 -26.73 -0.13 -1.26 16 15 C -0.11 -1.30 5.10 -26.73 -0.14 -1.44 16 16 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16 17 C 0.15 3.07 6.26 -4.04 -0.03 3.04 16 18 N -0.74 -18.99 5.60 -59.91 -0.34 -19.33 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 23 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 O 0.10 0.92 11.19 17.06 0.19 1.11 16 28 N -0.41 -4.30 11.54 30.38 0.35 -3.95 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.11 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.40 2.21 8.60 -40.82 -0.35 1.86 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 50 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 421.24 15.07 6.35 6.35 Total: -1.00 -35.16 421.24 -7.32 -42.48 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.61 Total: 3.88 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.61 Total: -5.43 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.50 Total: -56.69 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.16 -7.32 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171021674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.809 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds