Wall clock time and date at job start Sat Apr 11 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47179 * 2 1 4 4 C 1.53004 * 109.47240 * 240.00230 * 2 1 3 5 5 C 1.52999 * 109.47241 * 175.00250 * 4 2 1 6 6 C 1.53007 * 109.46937 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46935 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.46810 * 179.97438 * 7 6 5 9 9 C 1.36936 * 119.99666 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00051 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99818 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00078 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00069 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47557 * 89.99754 * 13 11 9 15 15 H 1.48507 * 109.47035 * 209.99467 * 13 11 9 16 16 H 1.48502 * 109.47202 * 329.99089 * 13 11 9 17 17 N 1.46500 * 109.47392 * 120.00154 * 2 1 3 18 18 C 1.34780 * 119.99954 * 274.99757 * 17 2 1 19 19 O 1.21284 * 119.99877 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00222 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.46869 * 60.00297 * 20 18 17 22 22 C 1.52994 * 109.47200 * 300.00503 * 20 18 17 23 23 N 1.46501 * 109.47137 * 180.02562 * 20 18 17 24 24 C 1.33878 * 122.76150 * 240.00080 * 23 20 18 25 25 O 1.21224 * 125.39650 * 359.97438 * 24 23 20 26 26 C 1.51313 * 109.20530 * 180.02562 * 24 23 20 27 27 C 1.54227 * 103.69342 * 359.92201 * 26 24 23 28 28 C 1.33871 * 122.75948 * 60.00163 * 23 20 18 29 29 O 1.21229 * 125.40167 * 0.02562 * 28 23 20 30 30 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47096 * 300.00073 * 1 2 3 32 32 H 1.08997 * 109.47160 * 59.99876 * 1 2 3 33 33 H 1.09001 * 109.46789 * 294.99606 * 4 2 1 34 34 H 1.09000 * 109.47262 * 54.99632 * 4 2 1 35 35 H 1.09001 * 109.46702 * 299.99408 * 5 4 2 36 36 H 1.09000 * 109.47497 * 59.99526 * 5 4 2 37 37 H 1.08998 * 109.46696 * 299.99678 * 6 5 4 38 38 H 1.09001 * 109.46602 * 59.99947 * 6 5 4 39 39 H 1.08997 * 109.47274 * 300.00363 * 7 6 5 40 40 H 1.08999 * 109.46717 * 60.00394 * 7 6 5 41 41 H 0.96996 * 119.99966 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00122 * 180.02562 * 12 11 9 43 43 H 0.96992 * 120.00220 * 94.99756 * 17 2 1 44 44 H 1.09000 * 109.47041 * 299.99689 * 22 20 18 45 45 H 1.09000 * 109.47513 * 59.99527 * 22 20 18 46 46 H 1.08997 * 109.47190 * 179.97438 * 22 20 18 47 47 H 1.09002 * 110.60607 * 118.51938 * 26 24 23 48 48 H 1.09002 * 110.60509 * 241.32619 * 26 24 23 49 49 H 1.09007 * 110.60335 * 118.59605 * 27 26 24 50 50 H 1.09001 * 110.61059 * 241.55663 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3351 -2.5627 7 6 5.5996 -1.2266 -2.6274 8 7 6.0880 -1.9182 -3.8230 9 6 7.4300 -1.9539 -4.0931 10 1 8.1283 -1.4726 -3.4245 11 6 7.8928 -2.6097 -5.2256 12 7 9.1827 -2.6445 -5.4850 13 14 6.6849 -3.4429 -6.3815 14 1 6.2490 -2.4773 -7.4221 15 1 7.3422 -4.6060 -7.0299 16 1 5.5033 -3.9079 -5.6116 17 7 2.0183 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8582 1.1584 2.4117 20 6 2.6490 -0.7288 3.5877 21 1 3.6481 -1.1213 3.3985 22 6 1.7045 -1.8823 3.9314 23 7 2.6978 0.2125 4.7093 24 6 3.8300 0.5041 5.3616 25 8 4.9223 0.0402 5.1142 26 6 3.5299 1.5035 6.4573 27 6 2.0124 1.7453 6.3253 28 6 1.6140 0.8518 5.1662 29 8 0.4914 0.7355 4.7236 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 3.8531 0.4370 -1.3574 36 1 3.9994 -1.0728 -0.4260 37 1 3.7864 -2.3853 -2.5185 38 1 3.6402 -0.8759 -3.4506 39 1 5.8876 -0.1763 -2.6716 40 1 6.0345 -1.6856 -1.7396 41 1 5.4607 -2.3502 -4.4236 42 1 9.5061 -3.1024 -6.2766 43 1 2.2490 -1.6317 1.1526 44 1 0.7054 -1.4898 4.1206 45 1 1.6677 -2.5827 3.0970 46 1 2.0677 -2.3965 4.8212 47 1 3.7680 1.0840 7.4348 48 1 4.0816 2.4293 6.2938 49 1 1.4956 1.4461 7.2372 50 1 1.8093 2.7908 6.0935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171117501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:52 Heat of formation + Delta-G solvation = -101.870487 kcal Electronic energy + Delta-G solvation = -29720.948527 eV Core-core repulsion = 25555.454400 eV Total energy + Delta-G solvation = -4165.494127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46921 -40.03098 -38.89763 -37.15385 -36.19628 -35.44842 -34.81263 -33.33879 -31.86586 -30.87634 -30.10250 -27.77659 -26.59037 -25.37392 -24.22501 -22.88791 -22.29173 -21.42790 -20.93502 -20.75717 -19.65419 -18.07553 -17.66708 -17.48025 -17.10790 -16.59443 -16.22693 -15.44207 -15.30369 -14.96383 -14.66299 -14.59161 -14.48478 -14.29861 -14.17076 -13.99163 -13.63215 -13.54997 -13.44364 -13.05756 -12.91140 -12.87285 -12.67630 -12.42934 -12.34565 -11.92346 -11.85161 -11.67382 -11.48116 -11.18145 -10.93604 -10.89131 -10.84586 -10.67573 -10.42461 -10.35822 -10.34292 -10.09966 -9.83960 -9.57387 -9.34543 -8.87430 -7.20735 -5.74915 -3.10178 1.16056 1.88166 2.26315 2.30697 2.88731 3.37943 3.40677 3.45597 3.61355 3.75570 3.94760 4.18397 4.30011 4.42322 4.47469 4.50465 4.60552 4.74823 4.82024 4.88832 4.94590 5.09167 5.09571 5.12982 5.17687 5.24310 5.30176 5.34531 5.48410 5.52713 5.54994 5.58339 5.64192 5.80095 5.86680 6.02666 6.06529 6.11267 6.17521 6.28012 6.35470 6.38881 6.78356 6.82032 6.92719 7.12383 7.38409 7.86651 8.02227 8.44410 9.23823 9.96237 10.16552 11.43661 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.002076 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.855052 B =13487.246143 C =14674.507130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.716 5.716 18 C 0.513 3.487 19 O -0.524 6.524 20 C 0.106 3.894 21 H 0.132 0.868 22 C -0.162 4.162 23 N -0.559 5.559 24 C 0.528 3.472 25 O -0.480 6.480 26 C -0.155 4.155 27 C -0.154 4.154 28 C 0.532 3.468 29 O -0.467 6.467 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.401 0.599 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.276 6.138 27.199 35.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.368 5.368 18 C 0.296 3.704 19 O -0.400 6.400 20 C 0.000 4.000 21 H 0.150 0.850 22 C -0.220 4.220 23 N -0.303 5.303 24 C 0.317 3.683 25 O -0.351 6.351 26 C -0.194 4.194 27 C -0.194 4.194 28 C 0.321 3.679 29 O -0.337 6.337 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.236 0.764 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.264 6.714 26.855 34.906 hybrid contribution -0.514 -1.146 -1.085 1.660 sum -21.777 5.568 25.770 34.195 Atomic orbital electron populations 1.22167 0.95161 1.02138 1.02622 1.21062 0.93888 0.97672 0.83495 0.89310 1.21949 0.96824 1.00968 0.96748 1.21520 0.93968 1.01257 0.98549 1.21778 0.97308 1.00265 0.97365 1.20630 0.90750 0.95716 0.90012 1.42736 1.05285 1.66049 1.26295 1.19090 0.82330 1.29166 1.06762 0.89272 1.24697 0.95654 1.00755 0.98318 1.69707 1.11711 1.48329 1.28591 0.86508 0.80859 0.79452 0.81474 1.21087 1.21720 1.20390 1.45979 1.67323 1.14125 1.09419 1.20392 0.77963 0.87518 0.84489 1.90722 1.49039 1.15669 1.84542 1.21257 1.03969 0.89829 0.84923 0.85024 1.22123 1.00252 0.96067 1.03565 1.46494 1.11660 1.41226 1.30939 1.20892 0.82957 0.81538 0.82930 1.90817 1.23429 1.53273 1.67610 1.22459 0.96743 1.00699 0.99534 1.22521 0.95854 1.02441 0.98592 1.20790 0.83803 0.79517 0.83763 1.90756 1.20654 1.62050 1.60269 0.92464 0.92085 0.91511 0.91281 0.90114 0.91785 0.91974 0.92153 0.92083 0.95696 0.95778 0.80744 0.93086 0.76381 0.90150 0.89938 0.90744 0.86030 0.85954 0.86220 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.15 0.35 -1.08 16 2 C 0.14 1.35 2.57 -67.93 -0.17 1.18 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 C -0.13 -1.15 4.75 -26.73 -0.13 -1.27 16 5 C -0.11 -1.33 5.10 -26.73 -0.14 -1.46 16 6 C -0.13 -1.90 5.33 -26.73 -0.14 -2.05 16 7 C 0.16 3.09 6.26 -4.04 -0.03 3.06 16 8 N -0.76 -18.67 5.41 -59.91 -0.32 -18.99 16 9 C -0.24 -7.14 10.47 -15.06 -0.16 -7.29 16 10 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 11 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 12 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 13 Si 0.89 22.48 27.73 -169.99 -4.71 17.77 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 16 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 17 N -0.72 -6.34 4.42 -53.81 -0.24 -6.58 16 18 C 0.51 5.62 6.76 -10.98 -0.07 5.55 16 19 O -0.52 -7.65 14.47 -10.70 -0.15 -7.80 16 20 C 0.11 0.93 3.12 -69.09 -0.22 0.71 16 21 H 0.13 1.09 7.41 -51.93 -0.38 0.70 16 22 C -0.16 -1.05 9.07 37.15 0.34 -0.71 16 23 N -0.56 -4.95 2.28 -109.34 -0.25 -5.20 16 24 C 0.53 4.40 8.08 -11.09 -0.09 4.31 16 25 O -0.48 -5.67 17.23 5.61 0.10 -5.57 16 26 C -0.15 -0.56 7.02 -26.94 -0.19 -0.75 16 27 C -0.15 -0.59 7.05 -26.76 -0.19 -0.78 16 28 C 0.53 4.67 6.71 -10.91 -0.07 4.60 16 29 O -0.47 -5.67 15.12 -10.66 -0.16 -5.83 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 43 H 0.40 2.61 8.02 -40.82 -0.33 2.28 16 44 H 0.08 0.66 6.64 -51.93 -0.34 0.32 16 45 H 0.08 0.38 7.56 -51.93 -0.39 -0.02 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 50 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -39.11 407.63 -8.23 -47.34 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.40 Total: 3.97 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.00 Total: 3.95 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.04 Total: -59.97 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.22 Total: -19.20 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -39.11 -8.23 -47.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171117501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.532 kcal (2) G-P(sol) polarization free energy of solvation -39.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds