Wall clock time and date at job start Sat Apr 11 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47179 * 2 1 4 4 C 1.53004 * 109.47240 * 240.00230 * 2 1 3 5 5 C 1.52999 * 109.47241 * 175.00250 * 4 2 1 6 6 C 1.53007 * 109.46937 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46935 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.46810 * 179.97438 * 7 6 5 9 9 C 1.36936 * 119.99666 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00051 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99818 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00078 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00069 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47557 * 89.99754 * 13 11 9 15 15 H 1.48507 * 109.47035 * 209.99467 * 13 11 9 16 16 H 1.48502 * 109.47202 * 329.99089 * 13 11 9 17 17 N 1.46500 * 109.47392 * 120.00154 * 2 1 3 18 18 C 1.34780 * 119.99954 * 274.99757 * 17 2 1 19 19 O 1.21284 * 119.99877 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00222 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.46869 * 60.00297 * 20 18 17 22 22 C 1.52994 * 109.47200 * 300.00503 * 20 18 17 23 23 N 1.46501 * 109.47137 * 180.02562 * 20 18 17 24 24 C 1.33878 * 122.76150 * 240.00080 * 23 20 18 25 25 O 1.21224 * 125.39650 * 359.97438 * 24 23 20 26 26 C 1.51313 * 109.20530 * 180.02562 * 24 23 20 27 27 C 1.54227 * 103.69342 * 359.92201 * 26 24 23 28 28 C 1.33871 * 122.75948 * 60.00163 * 23 20 18 29 29 O 1.21229 * 125.40167 * 0.02562 * 28 23 20 30 30 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47096 * 300.00073 * 1 2 3 32 32 H 1.08997 * 109.47160 * 59.99876 * 1 2 3 33 33 H 1.09001 * 109.46789 * 294.99606 * 4 2 1 34 34 H 1.09000 * 109.47262 * 54.99632 * 4 2 1 35 35 H 1.09001 * 109.46702 * 299.99408 * 5 4 2 36 36 H 1.09000 * 109.47497 * 59.99526 * 5 4 2 37 37 H 1.08998 * 109.46696 * 299.99678 * 6 5 4 38 38 H 1.09001 * 109.46602 * 59.99947 * 6 5 4 39 39 H 1.08997 * 109.47274 * 300.00363 * 7 6 5 40 40 H 1.08999 * 109.46717 * 60.00394 * 7 6 5 41 41 H 0.96996 * 119.99966 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00122 * 180.02562 * 12 11 9 43 43 H 0.96992 * 120.00220 * 94.99756 * 17 2 1 44 44 H 1.09000 * 109.47041 * 299.99689 * 22 20 18 45 45 H 1.09000 * 109.47513 * 59.99527 * 22 20 18 46 46 H 1.08997 * 109.47190 * 179.97438 * 22 20 18 47 47 H 1.09002 * 110.60607 * 118.51938 * 26 24 23 48 48 H 1.09002 * 110.60509 * 241.32619 * 26 24 23 49 49 H 1.09007 * 110.60335 * 118.59605 * 27 26 24 50 50 H 1.09001 * 110.61059 * 241.55663 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3351 -2.5627 7 6 5.5996 -1.2266 -2.6274 8 7 6.0880 -1.9182 -3.8230 9 6 7.4300 -1.9539 -4.0931 10 1 8.1283 -1.4726 -3.4245 11 6 7.8928 -2.6097 -5.2256 12 7 9.1827 -2.6445 -5.4850 13 14 6.6849 -3.4429 -6.3815 14 1 6.2490 -2.4773 -7.4221 15 1 7.3422 -4.6060 -7.0299 16 1 5.5033 -3.9079 -5.6116 17 7 2.0183 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8582 1.1584 2.4117 20 6 2.6490 -0.7288 3.5877 21 1 3.6481 -1.1213 3.3985 22 6 1.7045 -1.8823 3.9314 23 7 2.6978 0.2125 4.7093 24 6 3.8300 0.5041 5.3616 25 8 4.9223 0.0402 5.1142 26 6 3.5299 1.5035 6.4573 27 6 2.0124 1.7453 6.3253 28 6 1.6140 0.8518 5.1662 29 8 0.4914 0.7355 4.7236 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 3.8531 0.4370 -1.3574 36 1 3.9994 -1.0728 -0.4260 37 1 3.7864 -2.3853 -2.5185 38 1 3.6402 -0.8759 -3.4506 39 1 5.8876 -0.1763 -2.6716 40 1 6.0345 -1.6856 -1.7396 41 1 5.4607 -2.3502 -4.4236 42 1 9.5061 -3.1024 -6.2766 43 1 2.2490 -1.6317 1.1526 44 1 0.7054 -1.4898 4.1206 45 1 1.6677 -2.5827 3.0970 46 1 2.0677 -2.3965 4.8212 47 1 3.7680 1.0840 7.4348 48 1 4.0816 2.4293 6.2938 49 1 1.4956 1.4461 7.2372 50 1 1.8093 2.7908 6.0935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171117501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:51 Heat of formation + Delta-G solvation = -129.687198 kcal Electronic energy + Delta-G solvation = -29722.154750 eV Core-core repulsion = 25555.454400 eV Total energy + Delta-G solvation = -4166.700350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.09873 -40.84498 -39.62396 -38.16587 -37.06190 -36.85658 -35.42328 -34.79171 -33.28499 -32.16101 -30.81187 -29.09054 -27.08613 -26.11595 -25.68040 -23.71668 -23.35379 -22.58741 -22.14086 -21.62266 -20.33876 -19.63975 -18.75779 -18.36439 -17.69786 -17.35781 -16.93324 -16.65608 -16.33798 -16.20993 -15.86749 -15.74907 -15.28132 -15.10273 -14.91903 -14.86659 -14.72967 -14.63617 -14.34157 -14.21048 -13.95584 -13.70704 -13.42582 -13.33159 -13.12460 -13.00306 -12.96802 -12.95074 -12.51407 -12.29938 -12.12125 -12.10337 -11.90935 -11.81163 -11.58154 -11.56736 -11.47599 -11.43151 -11.02706 -10.99492 -10.64437 -10.17408 -9.33572 -8.05739 -5.40385 0.52752 1.28532 1.36107 1.41274 1.43874 1.48805 1.70130 2.17388 2.46794 3.17903 3.25015 3.26613 3.43326 3.53773 3.62386 3.75055 3.84973 3.87417 3.98371 4.04224 4.14772 4.17089 4.29170 4.34944 4.53775 4.57506 4.59950 4.66741 4.72116 4.74503 4.83989 4.86906 4.88196 4.90897 4.94116 4.97625 5.00421 5.07169 5.21725 5.27613 5.38151 5.46638 5.51812 5.71773 5.78607 6.18485 6.31809 6.38094 6.74490 7.04953 7.08917 7.80712 8.01659 9.15919 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.002076 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.855052 B =13487.246143 C =14674.507130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.064 0.936 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.115 4.115 7 C 0.149 3.851 8 N -0.760 5.760 9 C -0.243 4.243 10 H 0.050 0.950 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.964 3.036 14 H -0.276 1.276 15 H -0.293 1.293 16 H -0.247 1.247 17 N -0.706 5.706 18 C 0.507 3.493 19 O -0.567 6.567 20 C 0.099 3.901 21 H 0.134 0.866 22 C -0.152 4.152 23 N -0.567 5.567 24 C 0.520 3.480 25 O -0.524 6.524 26 C -0.141 4.141 27 C -0.142 4.142 28 C 0.521 3.479 29 O -0.509 6.509 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.015 0.985 40 H 0.019 0.981 41 H 0.368 0.632 42 H 0.259 0.741 43 H 0.415 0.585 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.153 0.847 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.797 5.288 27.949 37.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.153 4.153 7 C 0.023 3.977 8 N -0.406 5.406 9 C -0.374 4.374 10 H 0.068 0.932 11 C -0.260 4.260 12 N -0.635 5.635 13 Si 0.790 3.210 14 H -0.202 1.202 15 H -0.220 1.220 16 H -0.172 1.172 17 N -0.359 5.359 18 C 0.292 3.708 19 O -0.445 6.445 20 C -0.007 4.007 21 H 0.151 0.849 22 C -0.210 4.210 23 N -0.310 5.310 24 C 0.312 3.688 25 O -0.398 6.398 26 C -0.180 4.180 27 C -0.181 4.181 28 C 0.313 3.687 29 O -0.382 6.382 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.033 0.967 40 H 0.037 0.963 41 H 0.201 0.799 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.171 0.829 48 H 0.157 0.843 49 H 0.169 0.831 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.822 5.859 27.643 36.959 hybrid contribution 0.353 -0.817 -1.267 1.548 sum -23.469 5.042 26.376 35.664 Atomic orbital electron populations 1.22086 0.94349 1.02922 1.01928 1.20991 0.94416 0.96613 0.83909 0.91802 1.21846 0.94507 1.02233 0.96633 1.21443 0.95925 1.00151 0.97157 1.21659 0.93050 1.01565 0.99035 1.20846 0.94529 0.94352 0.87946 1.42738 1.03514 1.66504 1.27855 1.19057 0.84075 1.28214 1.06033 0.93166 1.25648 0.97813 1.02041 1.00503 1.69906 1.14322 1.49793 1.29492 0.85285 0.78941 0.77942 0.78858 1.20243 1.21992 1.17164 1.45934 1.66440 1.14697 1.08798 1.20834 0.77338 0.87152 0.85469 1.90691 1.51062 1.17512 1.85273 1.21376 1.04367 0.90485 0.84472 0.84884 1.22081 0.98551 0.95452 1.04937 1.46764 1.12237 1.41193 1.30767 1.21765 0.82034 0.81538 0.83443 1.90790 1.24831 1.55087 1.69086 1.22590 0.96530 0.99904 0.98989 1.22645 0.96010 1.01870 0.97539 1.21711 0.83080 0.79475 0.84471 1.90727 1.22165 1.63458 1.61852 0.90867 0.94602 0.90382 0.89204 0.89107 0.92905 0.91794 0.90889 0.91447 0.96740 0.96295 0.79866 0.93209 0.74806 0.91914 0.87893 0.89585 0.82879 0.84347 0.83093 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.48 71.98 0.68 -1.86 16 2 C 0.14 2.59 2.57 44.99 0.12 2.71 16 3 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 4 C -0.11 -1.76 4.75 30.60 0.15 -1.61 16 5 C -0.11 -2.32 5.10 30.60 0.16 -2.16 16 6 C -0.12 -3.11 5.33 30.60 0.16 -2.94 16 7 C 0.15 5.81 6.26 86.38 0.54 6.35 16 8 N -0.76 -36.69 5.41 -343.46 -1.86 -38.54 16 9 C -0.24 -14.45 10.47 84.03 0.88 -13.57 16 10 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 11 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 12 N -0.98 -64.56 13.97 21.65 0.30 -64.26 16 13 Si 0.96 45.81 27.73 68.60 1.90 47.71 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 16 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 17 N -0.71 -12.00 4.42 -442.53 -1.96 -13.96 16 18 C 0.51 11.36 6.76 87.66 0.59 11.95 16 19 O -0.57 -17.27 14.47 12.50 0.18 -17.09 16 20 C 0.10 1.75 3.12 44.24 0.14 1.89 16 21 H 0.13 2.25 7.41 -2.39 -0.02 2.24 16 22 C -0.15 -1.89 9.07 71.98 0.65 -1.23 16 23 N -0.57 -10.01 2.28 -737.69 -1.68 -11.69 16 24 C 0.52 8.43 8.08 87.99 0.71 9.14 16 25 O -0.52 -12.53 17.23 -2.86 -0.05 -12.58 16 26 C -0.14 -0.68 7.02 30.46 0.21 -0.46 16 27 C -0.14 -0.76 7.05 30.58 0.22 -0.55 16 28 C 0.52 9.00 6.71 88.11 0.59 9.59 16 29 O -0.51 -12.68 15.12 12.67 0.19 -12.48 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.34 7.75 -2.39 -0.02 1.32 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.37 16.49 5.53 -92.71 -0.51 15.98 16 42 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 43 H 0.41 4.69 8.02 -92.71 -0.74 3.94 16 44 H 0.06 1.04 6.64 -2.39 -0.02 1.02 16 45 H 0.10 0.78 7.56 -2.39 -0.02 0.77 16 46 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.15 -0.09 8.14 -2.38 -0.02 -0.11 16 50 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -89.60 407.63 2.93 -86.67 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.37 Total: 22.67 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.26 Total: 13.55 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -5.19 Total: -128.45 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: 0.32 Total: -42.16 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Total: -89.60 2.93 -86.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171117501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.015 kcal (2) G-P(sol) polarization free energy of solvation -89.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds