Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 5 5 C 1.53001 * 109.47001 * 175.00155 * 4 2 1 6 6 C 1.53000 * 109.47252 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47252 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47181 * 179.97438 * 7 6 5 9 9 C 1.36938 * 120.00300 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99460 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00390 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99810 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99879 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46996 * 60.00229 * 13 11 9 15 15 H 1.48507 * 109.46832 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47143 * 299.99756 * 13 11 9 17 17 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 18 18 C 1.34784 * 119.99893 * 274.99901 * 17 2 1 19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 2 21 21 C 1.53003 * 109.46624 * 180.02562 * 20 18 17 22 22 N 1.46507 * 109.46865 * 179.97438 * 21 20 18 23 23 C 1.33875 * 122.76070 * 269.70420 * 22 21 20 24 24 O 1.21231 * 125.39719 * 359.97438 * 23 22 21 25 25 C 1.51313 * 109.20705 * 179.84030 * 23 22 21 26 26 C 1.54224 * 103.55641 * 0.39224 * 25 23 22 27 27 C 1.33875 * 122.76213 * 89.99528 * 22 21 20 28 28 O 1.21223 * 125.39616 * 359.97438 * 27 22 21 29 29 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 32 32 H 1.08991 * 109.47642 * 295.00208 * 4 2 1 33 33 H 1.09005 * 109.47281 * 55.00277 * 4 2 1 34 34 H 1.09003 * 109.47143 * 300.00112 * 5 4 2 35 35 H 1.08991 * 109.47075 * 60.00135 * 5 4 2 36 36 H 1.09003 * 109.46744 * 299.99874 * 6 5 4 37 37 H 1.09000 * 109.47138 * 59.99996 * 6 5 4 38 38 H 1.09003 * 109.47143 * 299.99630 * 7 6 5 39 39 H 1.09000 * 109.47052 * 59.99943 * 7 6 5 40 40 H 0.97004 * 120.00001 * 0.02562 * 8 7 6 41 41 H 0.96993 * 119.99735 * 180.02562 * 12 11 9 42 42 H 0.97005 * 120.00261 * 95.00113 * 17 2 1 43 43 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 44 44 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 45 45 H 1.09001 * 109.46782 * 299.99104 * 21 20 18 46 46 H 1.08993 * 109.47555 * 59.99547 * 21 20 18 47 47 H 1.09002 * 110.79999 * 241.77863 * 25 23 22 48 48 H 1.09001 * 110.54513 * 118.87667 * 25 23 22 49 49 H 1.09000 * 110.60842 * 241.25935 * 26 25 23 50 50 H 1.08992 * 110.61121 * 118.28918 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0748 -1.3342 -2.5631 7 6 5.5997 -1.2268 -2.6272 8 7 6.0880 -1.9174 -3.8233 9 6 7.4301 -1.9539 -4.0930 10 1 8.1285 -1.4730 -3.4241 11 6 7.8928 -2.6078 -5.2266 12 7 7.0416 -3.1934 -6.0421 13 14 9.7235 -2.6568 -5.5948 14 1 10.4353 -3.3282 -4.4777 15 1 9.9553 -3.4108 -6.8530 16 1 10.2352 -1.2711 -5.7461 17 7 2.0182 -0.6907 1.1962 18 6 2.1469 -0.0183 2.3572 19 8 1.8581 1.1584 2.4117 20 6 2.6434 -0.7302 3.5891 21 6 2.6955 0.2531 4.7602 22 7 3.1776 -0.4391 5.9580 23 6 2.3562 -1.0440 6.8250 24 8 1.1485 -1.0930 6.7311 25 6 3.1743 -1.6597 7.9391 26 6 4.6255 -1.2934 7.5670 27 6 4.4752 -0.5140 6.2786 28 8 5.3856 -0.0340 5.6380 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9994 -1.0728 -0.4259 36 1 3.7864 -2.3844 -2.5198 37 1 3.6402 -0.8743 -3.4507 38 1 5.8885 -0.1766 -2.6703 39 1 6.0339 -1.6869 -1.7396 40 1 5.4606 -2.3484 -4.4247 41 1 7.3649 -3.6506 -6.8340 42 1 2.2490 -1.6319 1.1526 43 1 1.9668 -1.5493 3.8328 44 1 3.6414 -1.1266 3.4024 45 1 3.3719 1.0725 4.5167 46 1 1.6973 0.6491 4.9468 47 1 3.0455 -2.7419 7.9614 48 1 2.9027 -1.2224 8.8999 49 1 5.2186 -2.1932 7.4039 50 1 5.0748 -0.6716 8.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171722268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -114.563285 kcal Electronic energy + Delta-G solvation = -28657.418969 eV Core-core repulsion = 24491.374441 eV Total energy + Delta-G solvation = -4166.044528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38625 -40.11788 -39.05423 -37.13336 -36.36652 -35.29379 -34.63145 -33.28130 -31.92443 -30.79333 -30.04654 -27.44812 -26.73000 -25.29786 -24.13463 -22.90148 -22.22740 -21.06678 -20.74577 -20.62107 -19.90750 -18.13354 -17.47333 -17.02547 -16.99010 -16.91243 -16.43583 -15.79851 -15.17836 -15.07602 -14.72961 -14.69949 -14.57108 -14.44611 -14.13947 -13.94765 -13.76941 -13.41329 -13.31915 -13.13010 -12.96468 -12.87511 -12.81864 -12.35417 -11.98782 -11.77649 -11.71904 -11.46224 -11.26557 -11.15521 -10.99472 -10.78549 -10.70517 -10.54128 -10.43741 -10.42721 -10.30038 -10.03521 -9.98695 -9.65073 -9.27244 -8.83858 -6.88848 -5.73829 -3.02216 0.98716 1.92877 2.16091 2.37264 2.97318 3.45992 3.49738 3.51114 3.51269 3.64422 3.83261 4.20971 4.31273 4.44293 4.48112 4.56618 4.66811 4.85562 4.88287 4.95745 4.97478 4.97523 4.99824 5.05391 5.17828 5.25234 5.40165 5.44507 5.46687 5.55817 5.61573 5.69278 5.78414 5.89112 5.95343 6.10054 6.21501 6.30159 6.31172 6.36656 6.39686 6.47567 6.78687 6.90996 6.94883 7.23437 7.24651 7.72117 7.95700 8.45662 9.56187 10.15452 10.50112 11.49216 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.001904 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.413522 B =14699.118377 C =16762.525940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.720 5.720 18 C 0.523 3.477 19 O -0.541 6.541 20 C -0.158 4.158 21 C 0.115 3.885 22 N -0.576 5.576 23 C 0.525 3.475 24 O -0.480 6.480 25 C -0.157 4.157 26 C -0.157 4.157 27 C 0.523 3.477 28 O -0.473 6.473 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.402 0.598 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.920 2.529 30.298 33.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.372 5.372 18 C 0.308 3.692 19 O -0.418 6.418 20 C -0.199 4.199 21 C -0.006 4.006 22 N -0.319 5.319 23 C 0.314 3.686 24 O -0.351 6.351 25 C -0.197 4.197 26 C -0.197 4.197 27 C 0.311 3.689 28 O -0.344 6.344 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.236 0.764 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.116 3.660 29.905 33.271 hybrid contribution 0.941 -0.746 -0.602 1.343 sum -13.175 2.914 29.302 32.260 Atomic orbital electron populations 1.22173 0.95317 1.02095 1.02529 1.21071 0.93777 0.97772 0.83793 0.89251 1.21941 0.96897 1.00928 0.96714 1.21521 0.93924 1.01140 0.98641 1.21726 0.97266 1.00243 0.97095 1.20650 0.90996 0.95340 0.90557 1.42382 1.05319 1.64996 1.25185 1.19215 0.83933 1.28415 1.05453 0.91283 1.24755 0.97758 1.00999 0.97703 1.69653 1.32849 1.40769 1.15137 0.86244 0.85091 0.77485 0.77249 1.21282 1.21674 1.21261 1.46102 1.67173 1.14192 1.09701 1.20218 0.77398 0.87200 0.84372 1.90723 1.50098 1.15881 1.85119 1.21949 1.04275 1.00187 0.93527 1.21487 1.03136 0.94513 0.81499 1.46840 1.09898 1.50631 1.24570 1.20893 0.87300 0.76990 0.83433 1.90808 1.12518 1.56406 1.75338 1.22484 0.93423 1.04573 0.99207 1.22494 0.98151 1.02920 0.96137 1.20917 0.81522 0.79205 0.87213 1.90838 1.42378 1.45181 1.55965 0.92486 0.92272 0.91460 0.91338 0.90151 0.91963 0.92176 0.92151 0.92038 0.96564 0.96644 0.78355 0.93508 0.76397 0.88290 0.88040 0.87800 0.87918 0.85975 0.86091 0.85926 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.36 2.57 -67.93 -0.17 1.19 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.24 4.75 -26.73 -0.13 -1.37 16 5 C -0.11 -1.42 5.10 -26.73 -0.14 -1.55 16 6 C -0.13 -2.01 5.33 -26.73 -0.14 -2.15 16 7 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 8 N -0.73 -19.39 5.60 -59.91 -0.34 -19.73 16 9 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 10 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.94 -28.86 13.06 55.49 0.72 -28.14 16 13 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 N -0.72 -6.45 4.53 -53.81 -0.24 -6.70 16 18 C 0.52 5.44 7.79 -10.98 -0.09 5.36 16 19 O -0.54 -7.53 15.65 5.56 0.09 -7.44 16 20 C -0.16 -1.25 6.02 -27.88 -0.17 -1.41 16 21 C 0.11 0.99 4.85 -4.04 -0.02 0.97 16 22 N -0.58 -4.05 2.55 -115.33 -0.29 -4.35 16 23 C 0.52 3.35 8.08 -11.09 -0.09 3.26 16 24 O -0.48 -4.79 17.47 5.60 0.10 -4.69 16 25 C -0.16 -0.27 7.03 -26.94 -0.19 -0.46 16 26 C -0.16 -0.32 7.03 -26.94 -0.19 -0.51 16 27 C 0.52 3.59 8.08 -11.08 -0.09 3.50 16 28 O -0.47 -5.22 17.48 5.61 0.10 -5.12 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.73 7.75 -51.93 -0.40 0.32 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.40 2.78 8.60 -40.82 -0.35 2.43 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.10 1.02 7.79 -51.93 -0.40 0.61 16 46 H 0.10 0.96 7.77 -51.93 -0.40 0.55 16 47 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 48 H 0.12 0.02 8.14 -51.93 -0.42 -0.41 16 49 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 50 H 0.12 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 418.65 15.07 6.31 6.31 Total: -1.00 -37.76 418.65 -8.49 -46.25 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.58 Total: 4.55 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.33 Total: 1.21 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.15 Total: -58.91 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.28 Total: -17.25 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -37.76 -8.49 -46.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171722268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.309 kcal (2) G-P(sol) polarization free energy of solvation -37.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds