Wall clock time and date at job start Sat Apr 11 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 5 5 C 1.53001 * 109.47001 * 175.00155 * 4 2 1 6 6 C 1.53000 * 109.47252 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47252 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47181 * 179.97438 * 7 6 5 9 9 C 1.36938 * 120.00300 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99460 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00390 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99810 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99879 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46996 * 60.00229 * 13 11 9 15 15 H 1.48507 * 109.46832 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47143 * 299.99756 * 13 11 9 17 17 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 18 18 C 1.34784 * 119.99893 * 274.99901 * 17 2 1 19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 2 21 21 C 1.53003 * 109.46624 * 180.02562 * 20 18 17 22 22 N 1.46507 * 109.46865 * 179.97438 * 21 20 18 23 23 C 1.33875 * 122.76070 * 269.70420 * 22 21 20 24 24 O 1.21231 * 125.39719 * 359.97438 * 23 22 21 25 25 C 1.51313 * 109.20705 * 179.84030 * 23 22 21 26 26 C 1.54224 * 103.55641 * 0.39224 * 25 23 22 27 27 C 1.33875 * 122.76213 * 89.99528 * 22 21 20 28 28 O 1.21223 * 125.39616 * 359.97438 * 27 22 21 29 29 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 32 32 H 1.08991 * 109.47642 * 295.00208 * 4 2 1 33 33 H 1.09005 * 109.47281 * 55.00277 * 4 2 1 34 34 H 1.09003 * 109.47143 * 300.00112 * 5 4 2 35 35 H 1.08991 * 109.47075 * 60.00135 * 5 4 2 36 36 H 1.09003 * 109.46744 * 299.99874 * 6 5 4 37 37 H 1.09000 * 109.47138 * 59.99996 * 6 5 4 38 38 H 1.09003 * 109.47143 * 299.99630 * 7 6 5 39 39 H 1.09000 * 109.47052 * 59.99943 * 7 6 5 40 40 H 0.97004 * 120.00001 * 0.02562 * 8 7 6 41 41 H 0.96993 * 119.99735 * 180.02562 * 12 11 9 42 42 H 0.97005 * 120.00261 * 95.00113 * 17 2 1 43 43 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 44 44 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 45 45 H 1.09001 * 109.46782 * 299.99104 * 21 20 18 46 46 H 1.08993 * 109.47555 * 59.99547 * 21 20 18 47 47 H 1.09002 * 110.79999 * 241.77863 * 25 23 22 48 48 H 1.09001 * 110.54513 * 118.87667 * 25 23 22 49 49 H 1.09000 * 110.60842 * 241.25935 * 26 25 23 50 50 H 1.08992 * 110.61121 * 118.28918 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0748 -1.3342 -2.5631 7 6 5.5997 -1.2268 -2.6272 8 7 6.0880 -1.9174 -3.8233 9 6 7.4301 -1.9539 -4.0930 10 1 8.1285 -1.4730 -3.4241 11 6 7.8928 -2.6078 -5.2266 12 7 7.0416 -3.1934 -6.0421 13 14 9.7235 -2.6568 -5.5948 14 1 10.4353 -3.3282 -4.4777 15 1 9.9553 -3.4108 -6.8530 16 1 10.2352 -1.2711 -5.7461 17 7 2.0182 -0.6907 1.1962 18 6 2.1469 -0.0183 2.3572 19 8 1.8581 1.1584 2.4117 20 6 2.6434 -0.7302 3.5891 21 6 2.6955 0.2531 4.7602 22 7 3.1776 -0.4391 5.9580 23 6 2.3562 -1.0440 6.8250 24 8 1.1485 -1.0930 6.7311 25 6 3.1743 -1.6597 7.9391 26 6 4.6255 -1.2934 7.5670 27 6 4.4752 -0.5140 6.2786 28 8 5.3856 -0.0340 5.6380 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9994 -1.0728 -0.4259 36 1 3.7864 -2.3844 -2.5198 37 1 3.6402 -0.8743 -3.4507 38 1 5.8885 -0.1766 -2.6703 39 1 6.0339 -1.6869 -1.7396 40 1 5.4606 -2.3484 -4.4247 41 1 7.3649 -3.6506 -6.8340 42 1 2.2490 -1.6319 1.1526 43 1 1.9668 -1.5493 3.8328 44 1 3.6414 -1.1266 3.4024 45 1 3.3719 1.0725 4.5167 46 1 1.6973 0.6491 4.9468 47 1 3.0455 -2.7419 7.9614 48 1 2.9027 -1.2224 8.8999 49 1 5.2186 -2.1932 7.4039 50 1 5.0748 -0.6716 8.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171722268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:02 Heat of formation + Delta-G solvation = -141.410293 kcal Electronic energy + Delta-G solvation = -28658.583142 eV Core-core repulsion = 24491.374441 eV Total energy + Delta-G solvation = -4167.208702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.89960 -40.96911 -39.67073 -38.15640 -37.04378 -36.84299 -35.14251 -34.80476 -33.11887 -32.08075 -30.93776 -28.84046 -27.09791 -26.15625 -25.69871 -23.71296 -23.30287 -22.12331 -21.93534 -21.51370 -20.44875 -19.14394 -18.78681 -17.97141 -17.64105 -17.54154 -17.23939 -16.70545 -16.58061 -16.24741 -15.77225 -15.41126 -15.34796 -15.30701 -15.11650 -14.92797 -14.68196 -14.55577 -14.52321 -14.15796 -13.94764 -13.63699 -13.43030 -13.25990 -13.03781 -12.90193 -12.85135 -12.48665 -12.43801 -12.29579 -12.21238 -12.08456 -11.90033 -11.84636 -11.70225 -11.52044 -11.42152 -11.15776 -11.09659 -10.94853 -10.82876 -10.12085 -9.03465 -7.97926 -5.27504 0.48161 1.40285 1.45343 1.49034 1.53488 1.55337 1.67440 2.24047 2.54159 3.21480 3.28456 3.34912 3.53707 3.59918 3.64678 3.80580 3.81754 4.01112 4.03137 4.12176 4.20808 4.28858 4.32641 4.35529 4.39700 4.51114 4.58308 4.62270 4.74132 4.77486 4.80938 4.85104 4.90604 4.92667 4.96502 4.96760 4.99280 5.09805 5.24187 5.29583 5.41705 5.43822 5.50478 5.55625 5.80023 6.24799 6.30775 6.48073 6.71420 7.17158 7.30388 8.06685 8.30569 9.25370 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.001904 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.413522 B =14699.118377 C =16762.525940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.253 4.253 10 H 0.072 0.928 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.977 3.023 14 H -0.276 1.276 15 H -0.292 1.292 16 H -0.278 1.278 17 N -0.711 5.711 18 C 0.519 3.481 19 O -0.582 6.582 20 C -0.146 4.146 21 C 0.114 3.886 22 N -0.579 5.579 23 C 0.520 3.480 24 O -0.522 6.522 25 C -0.140 4.140 26 C -0.142 4.142 27 C 0.517 3.483 28 O -0.524 6.524 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.012 0.988 39 H 0.017 0.983 40 H 0.374 0.626 41 H 0.253 0.747 42 H 0.414 0.586 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.146 0.854 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 1.065 32.269 35.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.384 4.384 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.805 3.195 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.204 1.204 17 N -0.363 5.363 18 C 0.305 3.695 19 O -0.462 6.462 20 C -0.187 4.187 21 C -0.008 4.008 22 N -0.322 5.322 23 C 0.312 3.688 24 O -0.396 6.396 25 C -0.179 4.179 26 C -0.181 4.181 27 C 0.309 3.691 28 O -0.398 6.398 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.035 0.965 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.251 0.749 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.166 0.834 48 H 0.163 0.837 49 H 0.164 0.836 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.768 2.179 31.923 34.834 hybrid contribution 0.802 -0.240 -1.186 1.452 sum -12.966 1.939 30.737 33.416 Atomic orbital electron populations 1.22109 0.94311 1.02867 1.02202 1.20981 0.94490 0.96729 0.83997 0.91457 1.21838 0.94637 1.02018 0.96861 1.21426 0.95869 1.00102 0.96947 1.21596 0.93687 1.00976 0.98709 1.20856 0.94302 0.94213 0.88495 1.42616 1.04528 1.65408 1.26593 1.19619 0.85333 1.27948 1.05534 0.90966 1.25633 1.02398 1.01131 0.97745 1.69809 1.34786 1.41777 1.15535 0.85164 0.79668 0.77657 0.76987 1.20224 1.21779 1.20446 1.46057 1.66414 1.14734 1.09116 1.20639 0.76765 0.86793 0.85272 1.90705 1.51975 1.17723 1.85780 1.21863 1.04866 0.99956 0.91974 1.21283 1.01901 0.94658 0.82969 1.47029 1.10594 1.50399 1.24154 1.21777 0.86967 0.76072 0.83949 1.90789 1.14424 1.58002 1.76353 1.22601 0.91652 1.05781 0.97882 1.22615 0.98853 1.03219 0.93398 1.21847 0.80509 0.78460 0.88268 1.90812 1.43581 1.47484 1.57897 0.91098 0.93900 0.90524 0.89670 0.89516 0.92764 0.91640 0.91764 0.92384 0.97051 0.96488 0.79379 0.93854 0.74906 0.86583 0.87255 0.89807 0.89268 0.83385 0.83651 0.83597 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.14 2.67 2.57 44.99 0.12 2.78 16 3 H 0.07 1.60 7.58 -2.39 -0.02 1.58 16 4 C -0.12 -2.06 4.75 30.59 0.15 -1.91 16 5 C -0.11 -2.49 5.10 30.59 0.16 -2.34 16 6 C -0.11 -3.48 5.33 30.59 0.16 -3.32 16 7 C 0.15 6.14 6.26 86.38 0.54 6.68 16 8 N -0.75 -39.73 5.60 -343.45 -1.92 -41.65 16 9 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 10 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 11 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 12 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 13 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 N -0.71 -12.22 4.53 -442.54 -2.00 -14.23 16 18 C 0.52 11.02 7.79 87.65 0.68 11.70 16 19 O -0.58 -17.09 15.65 -3.04 -0.05 -17.14 16 20 C -0.15 -2.31 6.02 29.85 0.18 -2.13 16 21 C 0.11 2.11 4.85 86.38 0.42 2.53 16 22 N -0.58 -8.04 2.55 -756.64 -1.93 -9.97 16 23 C 0.52 6.03 8.08 87.99 0.71 6.74 16 24 O -0.52 -10.29 17.47 -2.88 -0.05 -10.34 16 25 C -0.14 0.01 7.03 30.46 0.21 0.22 16 26 C -0.14 -0.11 7.03 30.46 0.21 0.11 16 27 C 0.52 6.70 8.08 88.00 0.71 7.41 16 28 O -0.52 -11.78 17.48 -2.85 -0.05 -11.83 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.48 7.75 -2.39 -0.02 1.47 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.41 5.02 8.60 -92.70 -0.80 4.22 16 43 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 1.85 7.79 -2.39 -0.02 1.84 16 46 H 0.09 1.85 7.77 -2.39 -0.02 1.83 16 47 H 0.15 -0.64 8.14 -2.39 -0.02 -0.66 16 48 H 0.15 -0.59 8.14 -2.39 -0.02 -0.61 16 49 H 0.15 -0.44 8.14 -2.39 -0.02 -0.46 16 50 H 0.14 -0.43 8.14 -2.39 -0.02 -0.45 16 Total: -1.00 -84.74 418.65 1.98 -82.77 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.57 Total: 24.72 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.24 Total: 8.65 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.58 Total: -125.79 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.15 Total: -39.31 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -84.74 1.98 -82.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171722268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.642 kcal (2) G-P(sol) polarization free energy of solvation -84.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds