Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99888 * 2 1 4 4 H 1.08999 * 109.47443 * 30.00221 * 3 2 1 5 5 C 1.53000 * 109.47143 * 270.00154 * 3 2 1 6 6 C 1.53000 * 109.47284 * 150.00426 * 3 2 1 7 7 C 1.50702 * 109.46857 * 295.00205 * 6 3 2 8 8 O 1.21284 * 119.99786 * 359.97438 * 7 6 3 9 9 N 1.34778 * 120.00308 * 180.02562 * 7 6 3 10 10 C 1.47412 * 125.58525 * 359.97438 * 9 7 6 11 11 C 1.54862 * 104.81568 * 204.36808 * 10 9 7 12 12 C 1.55171 * 101.72752 * 322.77219 * 11 10 9 13 13 H 1.09004 * 113.89070 * 158.47738 * 12 11 10 14 14 C 1.53756 * 108.29755 * 285.33692 * 12 11 10 15 15 N 1.47006 * 108.07343 * 124.46415 * 14 12 11 16 16 C 1.46905 * 110.99947 * 123.96037 * 15 14 12 17 17 C 1.50705 * 109.46973 * 168.42956 * 16 15 14 18 18 O 1.21283 * 120.00124 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99519 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99807 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99725 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00275 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00054 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47206 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46664 * 120.00126 * 24 22 20 27 27 H 1.48496 * 109.47285 * 239.99752 * 24 22 20 28 28 C 1.47134 * 109.24238 * 1.23621 * 15 14 12 29 29 C 1.46703 * 125.59165 * 179.97438 * 9 7 6 30 30 H 1.09001 * 112.08881 * 55.85339 * 29 9 7 31 31 H 1.08997 * 109.47476 * 59.99832 * 1 2 3 32 32 H 1.09008 * 109.47335 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46950 * 299.99733 * 1 2 3 34 34 H 1.08999 * 109.47005 * 300.00334 * 5 3 2 35 35 H 1.09004 * 109.47016 * 59.99992 * 5 3 2 36 36 H 1.08997 * 109.47185 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47622 * 174.99932 * 6 3 2 38 38 H 1.09000 * 109.47361 * 54.99575 * 6 3 2 39 39 H 1.08996 * 110.37167 * 323.20146 * 10 9 7 40 40 H 1.09001 * 110.36874 * 85.42335 * 10 9 7 41 41 H 1.09001 * 110.97473 * 204.66172 * 11 10 9 42 42 H 1.08997 * 110.97772 * 80.88371 * 11 10 9 43 43 H 1.08999 * 109.74837 * 244.12445 * 14 12 11 44 44 H 1.08991 * 109.74751 * 4.80115 * 14 12 11 45 45 H 1.08998 * 109.46732 * 288.42663 * 16 15 14 46 46 H 1.08998 * 109.47129 * 48.42795 * 16 15 14 47 47 H 0.96995 * 120.00056 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00334 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.99378 * 222.73265 * 28 15 14 50 50 H 1.08999 * 110.02685 * 101.43180 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2633 0.7211 7 6 3.1417 0.9235 2.1732 8 8 2.0186 0.7343 2.5902 9 7 4.1952 0.8310 3.0086 10 6 5.6065 1.0362 2.6355 11 6 6.4146 0.2393 3.6892 12 6 5.5820 0.4831 4.9757 13 1 5.7432 -0.2629 5.7539 14 6 5.8413 1.9215 5.4531 15 7 4.5451 2.6063 5.5628 16 6 4.3477 3.1462 6.9147 17 6 3.1598 4.0737 6.9166 18 8 2.5391 4.2663 5.8926 19 7 2.7879 4.6899 8.0562 20 6 1.7070 5.5332 8.0581 21 1 1.1538 5.7040 7.1464 22 6 1.3232 6.1680 9.2330 23 7 1.9960 5.9598 10.3424 24 14 -0.1492 7.3176 9.2354 25 1 -0.7304 7.3806 7.8704 26 1 -1.1717 6.8102 10.1853 27 1 0.2836 8.6754 9.6528 28 6 3.4692 1.6676 5.2076 29 6 4.1256 0.5096 4.4383 30 1 3.6127 -0.4345 4.6217 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8828 1.0774 -1.9563 35 1 1.2567 1.8014 -1.9563 36 1 2.6613 2.7669 -1.4425 37 1 3.8427 2.2370 0.6443 38 1 3.9931 0.5052 0.2617 39 1 5.7956 0.6440 1.6363 40 1 5.8609 2.0951 2.6811 41 1 7.4221 0.6417 3.7943 42 1 6.4438 -0.8210 3.4384 43 1 6.3320 1.9037 6.4263 44 1 6.4724 2.4407 4.7320 45 1 4.1699 2.3266 7.6108 46 1 5.2381 3.6957 7.2201 47 1 3.2846 4.5361 8.8750 48 1 1.7283 6.4033 11.1625 49 1 2.7339 2.1655 4.5756 50 1 2.9895 1.2905 6.1108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187261521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -101.095941 kcal Electronic energy + Delta-G solvation = -30778.895745 eV Core-core repulsion = 26613.435205 eV Total energy + Delta-G solvation = -4165.460540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87006 -39.09846 -38.09604 -37.43990 -35.46070 -33.79433 -32.99067 -32.00984 -31.20149 -30.27185 -28.38011 -27.21520 -26.54835 -26.47589 -24.32268 -23.14075 -21.92717 -21.13327 -20.23180 -19.25887 -18.83391 -17.84085 -17.28007 -16.85393 -16.37856 -15.87062 -15.66149 -15.10183 -15.06619 -14.81297 -14.62999 -14.32213 -14.27940 -13.80811 -13.72637 -13.43524 -13.24363 -12.94526 -12.80910 -12.64388 -12.34779 -12.19989 -12.11791 -12.05634 -11.86981 -11.73549 -11.51004 -11.46872 -11.20747 -11.12286 -10.94954 -10.87916 -10.81234 -10.76261 -10.30373 -10.17327 -9.71259 -9.58339 -9.45250 -8.58581 -8.38061 -7.91015 -7.79282 -6.36655 -3.76901 2.78861 2.97683 3.19820 3.29805 3.37706 3.72037 3.97600 4.04402 4.14891 4.28894 4.34454 4.58162 4.63731 4.65765 4.93484 5.03895 5.05975 5.10901 5.14538 5.22720 5.27350 5.30066 5.30528 5.34711 5.39672 5.47367 5.52274 5.53291 5.57417 5.61144 5.70252 5.74068 5.77915 5.80076 5.85110 5.89655 5.96016 6.00514 6.03229 6.33121 6.35754 6.69517 7.16142 7.30752 7.35937 7.60094 7.60531 8.12475 8.31678 8.68378 9.24411 9.60857 10.13633 10.81499 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.002954 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.804396 B = 9477.543644 C =11404.732682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.379 6.379 3 C 0.098 3.902 4 H 0.071 0.929 5 C -0.174 4.174 6 C -0.133 4.133 7 C 0.533 3.467 8 O -0.526 6.526 9 N -0.607 5.607 10 C 0.101 3.899 11 C -0.122 4.122 12 C -0.120 4.120 13 H 0.102 0.898 14 C 0.049 3.951 15 N -0.504 5.504 16 C 0.042 3.958 17 C 0.445 3.555 18 O -0.574 6.574 19 N -0.568 5.568 20 C -0.295 4.295 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.052 3.948 29 C 0.130 3.870 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.098 0.902 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.364 -13.262 -17.004 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.298 6.298 3 C 0.040 3.960 4 H 0.089 0.911 5 C -0.231 4.231 6 C -0.173 4.173 7 C 0.322 3.678 8 O -0.402 6.402 9 N -0.342 5.342 10 C -0.022 4.022 11 C -0.160 4.160 12 C -0.140 4.140 13 H 0.120 0.880 14 C -0.079 4.079 15 N -0.228 5.228 16 C -0.090 4.090 17 C 0.230 3.770 18 O -0.457 6.457 19 N -0.206 5.206 20 C -0.425 4.425 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.076 4.076 29 C 0.026 3.974 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.117 0.883 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.307 -12.873 -17.690 23.776 hybrid contribution -0.464 0.138 1.337 1.422 sum 8.843 -12.735 -16.353 22.535 Atomic orbital electron populations 1.22694 0.81012 1.02293 0.99905 1.87849 1.19837 1.27087 1.94983 1.21802 0.93712 0.85892 0.94601 0.91083 1.22290 1.02519 1.01654 0.96654 1.21810 0.98952 1.04200 0.92369 1.20122 0.83566 0.76752 0.87349 1.90721 1.22603 1.49198 1.77637 1.48268 1.06572 1.70433 1.08942 1.22338 0.80776 1.00668 0.98435 1.22788 0.98697 1.00633 0.93921 1.23289 0.94260 0.98700 0.97745 0.88027 1.22824 0.92935 0.91296 1.00894 1.62734 1.00770 1.34194 1.25082 1.22142 0.99357 0.98114 0.89378 1.19770 0.87240 0.85231 0.84775 1.90528 1.56604 1.66171 1.32359 1.41862 1.28548 1.40814 1.09348 1.19740 1.05723 1.20091 0.96906 0.87964 1.25235 0.99234 0.98743 0.94828 1.69619 1.40659 1.44269 1.00070 0.85820 0.80719 0.79444 0.78495 1.19248 1.20809 1.20789 1.22964 0.94525 0.90959 0.99171 1.22258 0.95800 0.98310 0.81036 0.89449 0.94715 0.90162 0.93330 0.91830 0.92194 0.91390 0.87684 0.88430 0.90804 0.90667 0.89538 0.90665 0.92610 0.90332 0.93358 0.89429 0.77597 0.92031 0.88339 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.82 101.05 1.09 1.51 16 2 O -0.38 -4.98 9.58 -49.64 -0.48 -5.46 16 3 C 0.10 1.13 2.27 -26.73 -0.06 1.07 16 4 H 0.07 0.93 7.60 -51.93 -0.39 0.54 16 5 C -0.17 -1.46 9.53 37.16 0.35 -1.11 16 6 C -0.13 -1.42 4.41 -27.88 -0.12 -1.54 16 7 C 0.53 7.82 7.35 -10.98 -0.08 7.74 16 8 O -0.53 -9.90 15.12 -8.86 -0.13 -10.03 16 9 N -0.61 -7.80 3.01 -162.29 -0.49 -8.29 16 10 C 0.10 0.90 6.23 -2.56 -0.02 0.88 16 11 C -0.12 -0.90 6.30 -24.60 -0.16 -1.06 16 12 C -0.12 -1.20 4.25 -87.88 -0.37 -1.57 16 13 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.05 0.58 6.05 -3.37 -0.02 0.56 16 15 N -0.50 -8.54 4.80 -234.82 -1.13 -9.67 16 16 C 0.04 0.76 5.02 -4.97 -0.02 0.74 16 17 C 0.44 10.88 7.58 -10.98 -0.08 10.80 16 18 O -0.57 -16.22 14.78 5.55 0.08 -16.14 16 19 N -0.57 -14.82 5.29 -10.96 -0.06 -14.88 16 20 C -0.29 -8.46 9.68 -14.94 -0.14 -8.60 16 21 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 24 Si 0.93 21.61 29.55 -169.99 -5.02 16.58 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.05 0.92 5.27 -3.31 -0.02 0.90 16 29 C 0.13 1.77 3.65 -66.24 -0.24 1.52 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.85 7.84 -51.93 -0.41 0.44 16 39 H 0.07 0.49 7.46 -51.93 -0.39 0.10 16 40 H 0.08 0.70 7.49 -51.93 -0.39 0.32 16 41 H 0.09 0.49 7.96 -51.93 -0.41 0.08 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 44 H 0.08 0.87 6.78 -51.93 -0.35 0.51 16 45 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 46 H 0.09 1.43 7.99 -51.93 -0.41 1.01 16 47 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.10 2.19 6.68 -51.93 -0.35 1.84 16 50 H 0.05 0.88 7.51 -51.93 -0.39 0.49 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -35.83 397.26 -8.83 -44.66 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.32 Total: 9.31 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 0.01 Total: 12.31 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.95 Total: -57.22 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.53 Total: -31.63 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.83 -8.83 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187261521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.440 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds