Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99888 * 2 1 4 4 H 1.08999 * 109.47443 * 30.00221 * 3 2 1 5 5 C 1.53000 * 109.47143 * 270.00154 * 3 2 1 6 6 C 1.53000 * 109.47284 * 150.00426 * 3 2 1 7 7 C 1.50702 * 109.46857 * 295.00205 * 6 3 2 8 8 O 1.21284 * 119.99786 * 359.97438 * 7 6 3 9 9 N 1.34778 * 120.00308 * 180.02562 * 7 6 3 10 10 C 1.47412 * 125.58525 * 359.97438 * 9 7 6 11 11 C 1.54862 * 104.81568 * 204.36808 * 10 9 7 12 12 C 1.55171 * 101.72752 * 322.77219 * 11 10 9 13 13 H 1.09004 * 113.89070 * 158.47738 * 12 11 10 14 14 C 1.53756 * 108.29755 * 285.33692 * 12 11 10 15 15 N 1.47006 * 108.07343 * 124.46415 * 14 12 11 16 16 C 1.46905 * 110.99947 * 123.96037 * 15 14 12 17 17 C 1.50705 * 109.46973 * 168.42956 * 16 15 14 18 18 O 1.21283 * 120.00124 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99519 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99807 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99725 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00275 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00054 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47206 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46664 * 120.00126 * 24 22 20 27 27 H 1.48496 * 109.47285 * 239.99752 * 24 22 20 28 28 C 1.47134 * 109.24238 * 1.23621 * 15 14 12 29 29 C 1.46703 * 125.59165 * 179.97438 * 9 7 6 30 30 H 1.09001 * 112.08881 * 55.85339 * 29 9 7 31 31 H 1.08997 * 109.47476 * 59.99832 * 1 2 3 32 32 H 1.09008 * 109.47335 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46950 * 299.99733 * 1 2 3 34 34 H 1.08999 * 109.47005 * 300.00334 * 5 3 2 35 35 H 1.09004 * 109.47016 * 59.99992 * 5 3 2 36 36 H 1.08997 * 109.47185 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47622 * 174.99932 * 6 3 2 38 38 H 1.09000 * 109.47361 * 54.99575 * 6 3 2 39 39 H 1.08996 * 110.37167 * 323.20146 * 10 9 7 40 40 H 1.09001 * 110.36874 * 85.42335 * 10 9 7 41 41 H 1.09001 * 110.97473 * 204.66172 * 11 10 9 42 42 H 1.08997 * 110.97772 * 80.88371 * 11 10 9 43 43 H 1.08999 * 109.74837 * 244.12445 * 14 12 11 44 44 H 1.08991 * 109.74751 * 4.80115 * 14 12 11 45 45 H 1.08998 * 109.46732 * 288.42663 * 16 15 14 46 46 H 1.08998 * 109.47129 * 48.42795 * 16 15 14 47 47 H 0.96995 * 120.00056 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00334 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.99378 * 222.73265 * 28 15 14 50 50 H 1.08999 * 110.02685 * 101.43180 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2633 0.7211 7 6 3.1417 0.9235 2.1732 8 8 2.0186 0.7343 2.5902 9 7 4.1952 0.8310 3.0086 10 6 5.6065 1.0362 2.6355 11 6 6.4146 0.2393 3.6892 12 6 5.5820 0.4831 4.9757 13 1 5.7432 -0.2629 5.7539 14 6 5.8413 1.9215 5.4531 15 7 4.5451 2.6063 5.5628 16 6 4.3477 3.1462 6.9147 17 6 3.1598 4.0737 6.9166 18 8 2.5391 4.2663 5.8926 19 7 2.7879 4.6899 8.0562 20 6 1.7070 5.5332 8.0581 21 1 1.1538 5.7040 7.1464 22 6 1.3232 6.1680 9.2330 23 7 1.9960 5.9598 10.3424 24 14 -0.1492 7.3176 9.2354 25 1 -0.7304 7.3806 7.8704 26 1 -1.1717 6.8102 10.1853 27 1 0.2836 8.6754 9.6528 28 6 3.4692 1.6676 5.2076 29 6 4.1256 0.5096 4.4383 30 1 3.6127 -0.4345 4.6217 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8828 1.0774 -1.9563 35 1 1.2567 1.8014 -1.9563 36 1 2.6613 2.7669 -1.4425 37 1 3.8427 2.2370 0.6443 38 1 3.9931 0.5052 0.2617 39 1 5.7956 0.6440 1.6363 40 1 5.8609 2.0951 2.6811 41 1 7.4221 0.6417 3.7943 42 1 6.4438 -0.8210 3.4384 43 1 6.3320 1.9037 6.4263 44 1 6.4724 2.4407 4.7320 45 1 4.1699 2.3266 7.6108 46 1 5.2381 3.6957 7.2201 47 1 3.2846 4.5361 8.8750 48 1 1.7283 6.4033 11.1625 49 1 2.7339 2.1655 4.5756 50 1 2.9895 1.2905 6.1108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187261521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -128.701703 kcal Electronic energy + Delta-G solvation = -30780.092821 eV Core-core repulsion = 26613.435205 eV Total energy + Delta-G solvation = -4166.657616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.91271 -40.37022 -39.69892 -38.56591 -36.73744 -35.85609 -33.92626 -33.31159 -32.94925 -31.43952 -29.38278 -28.26105 -27.88997 -27.44449 -26.15609 -24.04223 -22.98973 -22.19924 -21.13682 -21.02981 -20.04214 -19.83085 -18.34659 -17.84602 -17.72315 -17.24448 -16.77605 -16.54230 -16.38327 -16.08102 -15.93498 -15.74798 -15.58805 -15.22253 -14.91199 -14.68880 -14.43857 -14.10230 -13.76000 -13.67786 -13.55021 -13.50206 -13.25423 -13.09870 -12.98332 -12.94794 -12.85874 -12.75058 -12.44935 -12.43561 -12.35685 -12.15836 -11.91599 -11.88081 -11.72352 -11.56566 -11.52637 -10.81896 -10.55009 -10.33103 -10.03127 -9.64489 -9.16371 -8.49506 -5.98091 1.33073 1.37595 1.52185 1.70308 2.02804 2.04201 2.26216 2.80958 2.83936 3.16004 3.22502 3.40332 3.54003 3.71989 3.79730 3.81484 4.12853 4.15534 4.21632 4.26187 4.29918 4.31537 4.38837 4.44272 4.46762 4.51736 4.53035 4.57090 4.59137 4.67175 4.74037 4.77982 4.82750 4.86509 4.92257 4.96742 5.01103 5.15312 5.21502 5.27944 5.30989 5.37720 5.47809 5.86432 6.01978 6.19561 6.25043 6.59069 6.60791 7.11150 7.24739 7.54238 8.11862 8.68328 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.002954 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.804396 B = 9477.543644 C =11404.732682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.397 6.397 3 C 0.092 3.908 4 H 0.039 0.961 5 C -0.164 4.164 6 C -0.125 4.125 7 C 0.517 3.483 8 O -0.584 6.584 9 N -0.608 5.608 10 C 0.091 3.909 11 C -0.108 4.108 12 C -0.106 4.106 13 H 0.124 0.876 14 C 0.046 3.954 15 N -0.524 5.524 16 C 0.055 3.945 17 C 0.437 3.563 18 O -0.620 6.620 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.278 1.278 26 H -0.270 1.270 27 H -0.266 1.266 28 C 0.060 3.940 29 C 0.127 3.873 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.117 0.883 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.039 0.961 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.634 -13.982 -17.700 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.317 6.317 3 C 0.033 3.967 4 H 0.058 0.942 5 C -0.221 4.221 6 C -0.164 4.164 7 C 0.308 3.692 8 O -0.464 6.464 9 N -0.342 5.342 10 C -0.030 4.030 11 C -0.146 4.146 12 C -0.125 4.125 13 H 0.142 0.858 14 C -0.081 4.081 15 N -0.249 5.249 16 C -0.076 4.076 17 C 0.225 3.775 18 O -0.506 6.506 19 N -0.214 5.214 20 C -0.463 4.463 21 H 0.090 0.910 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.202 1.202 26 H -0.195 1.195 27 H -0.191 1.191 28 C -0.069 4.069 29 C 0.022 3.978 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.135 0.865 47 H 0.230 0.770 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 12.659 -13.601 -18.369 26.128 hybrid contribution -1.497 0.380 1.572 2.204 sum 11.163 -13.220 -16.796 24.114 Atomic orbital electron populations 1.22739 0.80521 1.03068 0.99590 1.87797 1.20543 1.28147 1.95163 1.21950 0.93505 0.84736 0.96475 0.94239 1.22215 1.03105 1.02626 0.94172 1.21876 0.99076 1.06053 0.89424 1.20987 0.83185 0.75921 0.89138 1.90690 1.25009 1.51820 1.78908 1.48440 1.08165 1.69204 1.08365 1.22685 0.78295 1.01198 1.00817 1.22832 0.99145 1.01551 0.91035 1.23312 0.91602 0.98074 0.99545 0.85772 1.23000 0.90170 0.92145 1.02767 1.62582 1.02708 1.35360 1.24205 1.22017 0.97132 0.97496 0.90952 1.20961 0.88208 0.84886 0.83458 1.90505 1.58519 1.67611 1.33928 1.41922 1.28305 1.41003 1.10127 1.19636 1.07466 1.22536 0.96617 0.90955 1.26003 1.01571 0.99527 0.94037 1.69667 1.41479 1.44495 1.00441 0.84903 0.77524 0.77995 0.78092 1.20246 1.19470 1.19122 1.22667 0.94264 0.92098 0.97822 1.22235 0.98160 0.95845 0.81557 0.90329 0.92618 0.88886 0.96022 0.90399 0.92088 0.89959 0.85625 0.85574 0.87767 0.90954 0.86483 0.89082 0.90424 0.88744 0.91451 0.86499 0.76964 0.91236 0.94288 0.95493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.82 113.37 1.23 2.11 16 2 O -0.40 -10.74 9.58 -135.20 -1.30 -12.04 16 3 C 0.09 2.14 2.27 30.59 0.07 2.21 16 4 H 0.04 1.15 7.60 -2.39 -0.02 1.13 16 5 C -0.16 -2.52 9.53 71.98 0.69 -1.84 16 6 C -0.13 -2.57 4.41 29.85 0.13 -2.44 16 7 C 0.52 15.77 7.35 87.66 0.64 16.41 16 8 O -0.58 -24.09 15.12 10.74 0.16 -23.93 16 9 N -0.61 -15.39 3.01 -785.76 -2.36 -17.76 16 10 C 0.09 1.32 6.23 86.84 0.54 1.86 16 11 C -0.11 -1.07 6.30 31.97 0.20 -0.87 16 12 C -0.11 -1.77 4.25 -9.02 -0.04 -1.81 16 13 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 14 C 0.05 0.95 6.05 86.54 0.52 1.47 16 15 N -0.52 -17.67 4.80 -896.82 -4.31 -21.98 16 16 C 0.06 2.00 5.02 85.56 0.43 2.43 16 17 C 0.44 22.31 7.58 87.66 0.66 22.98 16 18 O -0.62 -37.42 14.78 -3.04 -0.04 -37.46 16 19 N -0.58 -31.10 5.29 -306.98 -1.62 -32.72 16 20 C -0.33 -19.90 9.68 84.04 0.81 -19.08 16 21 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 23 N -0.92 -50.94 13.05 21.66 0.28 -50.66 16 24 Si 0.99 44.74 29.55 68.60 2.03 46.76 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 C 0.06 2.27 5.27 86.51 0.46 2.73 16 29 C 0.13 3.46 3.65 45.98 0.17 3.62 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 1.05 7.87 -2.39 -0.02 1.03 16 32 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.02 0.61 8.08 -2.39 -0.02 0.59 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 0.92 7.87 -2.38 -0.02 0.91 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.13 1.85 7.84 -2.39 -0.02 1.83 16 39 H 0.10 0.91 7.46 -2.39 -0.02 0.90 16 40 H 0.07 1.13 7.49 -2.39 -0.02 1.11 16 41 H 0.12 0.57 7.96 -2.39 -0.02 0.55 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 1.32 7.51 -2.39 -0.02 1.30 16 44 H 0.09 1.69 6.78 -2.39 -0.02 1.67 16 45 H 0.07 2.20 7.82 -2.39 -0.02 2.18 16 46 H 0.12 3.56 7.99 -2.39 -0.02 3.54 16 47 H 0.40 20.09 7.90 -92.71 -0.73 19.36 16 48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.04 1.92 6.68 -2.39 -0.02 1.90 16 50 H 0.03 1.07 7.51 -2.39 -0.02 1.05 16 Total: -1.00 -86.25 397.26 0.03 -86.22 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.21 Total: 33.96 kcal Atomic # 6 Polarization: 22.62 SS G_CDS: 6.98 Total: 29.61 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -8.01 Total: -123.12 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -1.18 Total: -73.43 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -86.25 0.03 -86.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187261521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.485 kcal (2) G-P(sol) polarization free energy of solvation -86.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds