Wall clock time and date at job start Sat Apr 11 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00333 * 2 1 4 4 C 1.50700 * 119.99852 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.46977 * 95.00193 * 4 2 1 6 6 H 1.08998 * 109.47869 * 54.99550 * 5 4 2 7 7 C 1.53007 * 109.47086 * 294.99540 * 5 4 2 8 8 C 1.50703 * 109.47192 * 175.00298 * 5 4 2 9 9 O 1.21275 * 119.99645 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99928 * 179.97438 * 8 5 4 11 11 C 1.46499 * 119.99606 * 179.97438 * 10 8 5 12 12 H 1.09006 * 110.63107 * 36.65392 * 11 10 8 13 13 C 1.54310 * 110.70947 * 273.54298 * 11 10 8 14 14 N 1.47446 * 107.23815 * 219.33587 * 13 11 10 15 15 C 1.46895 * 110.99823 * 236.74329 * 14 13 11 16 16 C 1.50710 * 109.46862 * 169.99855 * 15 14 13 17 17 O 1.21294 * 119.99578 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00100 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99745 * 180.02562 * 18 16 15 20 20 H 1.07992 * 120.00442 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99751 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00272 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00073 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46902 * 90.00263 * 23 21 19 25 25 H 1.48497 * 109.47101 * 210.00400 * 23 21 19 26 26 H 1.48499 * 109.46902 * 330.00456 * 23 21 19 27 27 C 1.47846 * 108.56388 * 359.00895 * 14 13 11 28 28 C 1.54912 * 104.79627 * 24.09857 * 27 14 13 29 29 H 1.08999 * 110.99162 * 81.01775 * 28 27 14 30 30 O 1.42892 * 110.98995 * 204.83809 * 28 27 14 31 31 H 1.07991 * 119.99860 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99909 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.46953 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47318 * 119.99680 * 3 2 1 35 35 H 1.09000 * 109.47161 * 240.00311 * 3 2 1 36 36 H 1.09000 * 109.46951 * 214.99529 * 4 2 1 37 37 H 1.08991 * 109.47502 * 334.99825 * 4 2 1 38 38 H 1.08998 * 109.46775 * 300.00680 * 7 5 4 39 39 H 1.09003 * 109.46878 * 59.99987 * 7 5 4 40 40 H 1.08997 * 109.47144 * 179.97438 * 7 5 4 41 41 H 0.97001 * 119.99879 * 359.97438 * 10 8 5 42 42 H 1.09006 * 109.89208 * 338.74408 * 13 11 10 43 43 H 1.09009 * 109.89040 * 99.76627 * 13 11 10 44 44 H 1.08992 * 109.47592 * 289.99341 * 15 14 13 45 45 H 1.08996 * 109.47650 * 50.00606 * 15 14 13 46 46 H 0.97005 * 119.99850 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00686 * 179.97438 * 22 21 19 48 48 H 1.08996 * 110.37274 * 142.92152 * 27 14 13 49 49 H 1.08991 * 110.37591 * 265.15322 * 27 14 13 50 50 H 0.96710 * 114.00017 * 292.26541 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 1 2.9769 -0.8639 -1.9011 7 6 1.1487 -1.9538 -2.2333 8 6 3.2852 -2.9223 -1.4294 9 8 3.5771 -3.4505 -0.3775 10 7 3.7279 -3.4433 -2.5909 11 6 4.5623 -4.6474 -2.5826 12 1 4.2401 -5.3326 -1.7984 13 6 6.0505 -4.2789 -2.4076 14 7 6.8282 -5.1735 -3.2845 15 6 7.8301 -5.9237 -2.5156 16 6 8.4327 -6.9956 -3.3869 17 8 8.0634 -7.1222 -4.5353 18 7 9.3811 -7.8140 -2.8899 19 6 9.9296 -8.7887 -3.6827 20 1 9.6015 -8.9010 -4.7055 21 6 10.9078 -9.6321 -3.1704 22 7 11.4340 -10.5660 -3.9305 23 14 11.4761 -9.4374 -1.4016 24 1 10.6353 -10.2823 -0.5158 25 1 12.8950 -9.8604 -1.2881 26 1 11.3494 -8.0149 -0.9947 27 6 5.8926 -6.0894 -3.9713 28 6 4.5352 -5.3430 -3.9692 29 1 4.4921 -4.6087 -4.7736 30 8 3.4452 -6.2626 -4.0593 31 1 -0.5399 -0.9352 0.0004 32 1 -0.5400 0.9354 0.0004 33 1 1.3553 2.1336 0.0005 34 1 2.6902 1.3629 0.8900 35 1 2.6902 1.3628 -0.8900 36 1 2.9742 -1.1991 0.5888 37 1 1.4386 -2.0856 0.4334 38 1 0.5991 -2.7731 -1.7700 39 1 0.5281 -1.0577 -2.2394 40 1 1.4079 -2.2227 -3.2573 41 1 3.4940 -3.0209 -3.4322 42 1 6.2124 -3.2411 -2.6993 43 1 6.3485 -4.4227 -1.3690 44 1 8.6140 -5.2448 -2.1804 45 1 7.3538 -6.3844 -1.6501 46 1 9.6762 -7.7129 -1.9713 47 1 12.1172 -11.1546 -3.5730 48 1 6.2231 -6.2728 -4.9936 49 1 5.8118 -7.0291 -3.4250 50 1 3.3872 -6.7219 -4.9084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195526708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:26 Heat of formation + Delta-G solvation = -95.794448 kcal Electronic energy + Delta-G solvation = -29703.754740 eV Core-core repulsion = 25538.524090 eV Total energy + Delta-G solvation = -4165.230650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56139 -39.40449 -38.03517 -37.04154 -35.84702 -34.60885 -33.92449 -33.09934 -31.74221 -30.18672 -28.14498 -27.66177 -27.38894 -26.64612 -24.32561 -23.51866 -21.51974 -20.92437 -20.23559 -19.45002 -18.77402 -18.34129 -17.58101 -17.31984 -16.60583 -15.98867 -15.72869 -15.32589 -15.15244 -14.86451 -14.81963 -14.57149 -14.42962 -13.98977 -13.72373 -13.50230 -13.44629 -13.10914 -13.03584 -12.92199 -12.72469 -12.48567 -12.42966 -12.30509 -12.06580 -12.00030 -11.91981 -11.65689 -11.46205 -11.36375 -11.26518 -11.13439 -10.69747 -10.60332 -10.21264 -10.00755 -9.88313 -9.58753 -9.38941 -9.36674 -8.52746 -8.22438 -8.04014 -6.34640 -3.86244 1.82596 2.42743 2.89284 3.01722 3.05984 3.14163 3.67277 3.71465 4.07696 4.20473 4.24987 4.39137 4.44563 4.51252 4.66965 4.73826 4.76957 4.88181 4.93695 5.01209 5.12904 5.18091 5.25331 5.26139 5.31155 5.37849 5.39183 5.45630 5.54461 5.57417 5.59240 5.66368 5.75289 5.76479 5.82232 5.85346 5.88251 6.05786 6.24794 6.27769 6.42513 6.50745 7.01526 7.07470 7.25995 7.51575 7.54021 8.00828 8.09789 8.55185 8.90586 9.38156 9.76988 10.78129 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.002045 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.050859 B =13685.669605 C =14473.118318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.103 4.103 6 H 0.098 0.902 7 C -0.146 4.146 8 C 0.518 3.482 9 O -0.537 6.537 10 N -0.716 5.716 11 C 0.133 3.867 12 H 0.102 0.898 13 C 0.033 3.967 14 N -0.502 5.502 15 C 0.035 3.965 16 C 0.449 3.551 17 O -0.566 6.566 18 N -0.587 5.587 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.043 3.957 22 N -0.879 5.879 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.031 3.969 28 C 0.081 3.919 29 H 0.076 0.924 30 O -0.559 6.559 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.401 0.599 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.371 0.629 47 H 0.274 0.726 48 H 0.112 0.888 49 H 0.057 0.943 50 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.215 21.391 5.547 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.123 4.123 3 C -0.178 4.178 4 C -0.106 4.106 5 C -0.125 4.125 6 H 0.116 0.884 7 C -0.204 4.204 8 C 0.304 3.696 9 O -0.414 6.414 10 N -0.367 5.367 11 C 0.027 3.973 12 H 0.120 0.880 13 C -0.096 4.096 14 N -0.228 5.228 15 C -0.096 4.096 16 C 0.235 3.765 17 O -0.449 6.449 18 N -0.225 5.225 19 C -0.434 4.434 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.519 5.519 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.097 4.097 28 C 0.021 3.979 29 H 0.093 0.907 30 O -0.365 6.365 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.236 0.764 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.204 0.796 47 H 0.084 0.916 48 H 0.130 0.870 49 H 0.075 0.925 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -19.924 21.218 5.751 29.669 hybrid contribution 0.325 -0.496 1.059 1.214 sum -19.598 20.721 6.810 29.323 Atomic orbital electron populations 1.23755 0.95181 1.01835 1.02479 1.21742 0.95429 0.95592 0.99506 1.20895 1.00287 0.94263 1.02316 1.20472 1.00995 0.94356 0.94736 1.21233 0.96914 0.95826 0.98485 0.88372 1.21851 0.96202 1.02903 0.99409 1.20668 0.79696 0.85577 0.83610 1.90715 1.57888 1.61805 1.30960 1.45911 1.52764 1.28969 1.09053 1.22133 0.90693 0.86450 0.98069 0.88026 1.23274 0.90460 0.98830 0.97074 1.63421 1.13398 1.19335 1.26607 1.22217 0.96275 0.96024 0.95132 1.19599 0.83657 0.84495 0.88714 1.90513 1.63054 1.72823 1.18463 1.42197 1.36090 1.31069 1.13184 1.19418 1.18391 1.07473 0.98158 0.86223 1.25043 0.96730 0.96019 0.98275 1.69614 1.27446 1.18755 1.36081 0.86682 0.79513 0.78582 0.84717 1.19588 1.20096 1.19419 1.23721 0.88509 0.94280 1.03147 1.23312 0.87219 0.91394 0.96006 0.90655 1.86470 1.49453 1.59153 1.41391 0.88440 0.88546 0.92048 0.91485 0.91550 0.90280 0.90578 0.92033 0.90942 0.92126 0.76434 0.89866 0.91578 0.88834 0.92927 0.79614 0.91553 0.87047 0.92490 0.76767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.20 12.51 29.01 0.36 -0.84 16 2 C -0.12 -0.82 4.79 -101.06 -0.48 -1.30 16 3 C -0.12 -0.66 10.12 36.01 0.36 -0.30 16 4 C -0.07 -0.55 4.22 -27.88 -0.12 -0.67 16 5 C -0.10 -0.77 2.72 -91.77 -0.25 -1.02 16 6 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 7 C -0.15 -0.90 8.72 37.16 0.32 -0.57 16 8 C 0.52 5.59 7.15 -10.98 -0.08 5.52 16 9 O -0.54 -8.00 15.64 5.56 0.09 -7.91 16 10 N -0.72 -6.94 5.02 -52.04 -0.26 -7.20 16 11 C 0.13 1.63 2.97 -66.11 -0.20 1.44 16 12 H 0.10 1.52 7.69 -51.93 -0.40 1.12 16 13 C 0.03 0.43 6.62 -2.84 -0.02 0.41 16 14 N -0.50 -7.92 5.21 -232.69 -1.21 -9.13 16 15 C 0.04 0.60 5.32 -4.97 -0.03 0.57 16 16 C 0.45 10.04 7.31 -10.98 -0.08 9.96 16 17 O -0.57 -14.37 13.13 5.54 0.07 -14.30 16 18 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 19 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 22 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 23 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 27 C 0.03 0.50 4.68 -2.29 -0.01 0.48 16 28 C 0.08 0.97 4.03 -24.59 -0.10 0.87 16 29 H 0.08 0.76 8.00 -51.93 -0.42 0.35 16 30 O -0.56 -6.63 13.47 -35.23 -0.47 -7.10 16 31 H 0.10 0.59 7.99 -52.49 -0.42 0.17 16 32 H 0.10 0.50 7.83 -52.48 -0.41 0.09 16 33 H 0.06 0.29 7.78 -51.93 -0.40 -0.12 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.73 7.95 -51.93 -0.41 0.32 16 37 H 0.08 0.70 7.99 -51.93 -0.41 0.28 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.39 6.52 -51.93 -0.34 0.05 16 40 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 41 H 0.40 2.82 7.93 -40.82 -0.32 2.50 16 42 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 43 H 0.07 0.88 7.50 -51.92 -0.39 0.49 16 44 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.05 0.82 7.96 -51.93 -0.41 0.41 16 46 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.11 1.99 6.71 -51.93 -0.35 1.64 16 49 H 0.06 1.01 7.53 -51.93 -0.39 0.62 16 50 H 0.38 3.11 9.12 45.56 0.42 3.52 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -34.31 403.07 -7.65 -41.96 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -7.38 Total: 14.71 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.56 Total: 6.91 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.75 Total: -55.00 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.31 Total: -29.32 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.31 -7.65 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195526708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.838 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds