Wall clock time and date at job start Sat Apr 11 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00333 * 2 1 4 4 C 1.50700 * 119.99852 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.46977 * 95.00193 * 4 2 1 6 6 H 1.08998 * 109.47869 * 54.99550 * 5 4 2 7 7 C 1.53007 * 109.47086 * 294.99540 * 5 4 2 8 8 C 1.50703 * 109.47192 * 175.00298 * 5 4 2 9 9 O 1.21275 * 119.99645 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99928 * 179.97438 * 8 5 4 11 11 C 1.46499 * 119.99606 * 179.97438 * 10 8 5 12 12 H 1.09006 * 110.63107 * 36.65392 * 11 10 8 13 13 C 1.54310 * 110.70947 * 273.54298 * 11 10 8 14 14 N 1.47446 * 107.23815 * 219.33587 * 13 11 10 15 15 C 1.46895 * 110.99823 * 236.74329 * 14 13 11 16 16 C 1.50710 * 109.46862 * 169.99855 * 15 14 13 17 17 O 1.21294 * 119.99578 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00100 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99745 * 180.02562 * 18 16 15 20 20 H 1.07992 * 120.00442 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99751 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00272 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00073 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46902 * 90.00263 * 23 21 19 25 25 H 1.48497 * 109.47101 * 210.00400 * 23 21 19 26 26 H 1.48499 * 109.46902 * 330.00456 * 23 21 19 27 27 C 1.47846 * 108.56388 * 359.00895 * 14 13 11 28 28 C 1.54912 * 104.79627 * 24.09857 * 27 14 13 29 29 H 1.08999 * 110.99162 * 81.01775 * 28 27 14 30 30 O 1.42892 * 110.98995 * 204.83809 * 28 27 14 31 31 H 1.07991 * 119.99860 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99909 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.46953 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47318 * 119.99680 * 3 2 1 35 35 H 1.09000 * 109.47161 * 240.00311 * 3 2 1 36 36 H 1.09000 * 109.46951 * 214.99529 * 4 2 1 37 37 H 1.08991 * 109.47502 * 334.99825 * 4 2 1 38 38 H 1.08998 * 109.46775 * 300.00680 * 7 5 4 39 39 H 1.09003 * 109.46878 * 59.99987 * 7 5 4 40 40 H 1.08997 * 109.47144 * 179.97438 * 7 5 4 41 41 H 0.97001 * 119.99879 * 359.97438 * 10 8 5 42 42 H 1.09006 * 109.89208 * 338.74408 * 13 11 10 43 43 H 1.09009 * 109.89040 * 99.76627 * 13 11 10 44 44 H 1.08992 * 109.47592 * 289.99341 * 15 14 13 45 45 H 1.08996 * 109.47650 * 50.00606 * 15 14 13 46 46 H 0.97005 * 119.99850 * 359.97438 * 18 16 15 47 47 H 0.97001 * 120.00686 * 179.97438 * 22 21 19 48 48 H 1.08996 * 110.37274 * 142.92152 * 27 14 13 49 49 H 1.08991 * 110.37591 * 265.15322 * 27 14 13 50 50 H 0.96710 * 114.00017 * 292.26541 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 1 2.9769 -0.8639 -1.9011 7 6 1.1487 -1.9538 -2.2333 8 6 3.2852 -2.9223 -1.4294 9 8 3.5771 -3.4505 -0.3775 10 7 3.7279 -3.4433 -2.5909 11 6 4.5623 -4.6474 -2.5826 12 1 4.2401 -5.3326 -1.7984 13 6 6.0505 -4.2789 -2.4076 14 7 6.8282 -5.1735 -3.2845 15 6 7.8301 -5.9237 -2.5156 16 6 8.4327 -6.9956 -3.3869 17 8 8.0634 -7.1222 -4.5353 18 7 9.3811 -7.8140 -2.8899 19 6 9.9296 -8.7887 -3.6827 20 1 9.6015 -8.9010 -4.7055 21 6 10.9078 -9.6321 -3.1704 22 7 11.4340 -10.5660 -3.9305 23 14 11.4761 -9.4374 -1.4016 24 1 10.6353 -10.2823 -0.5158 25 1 12.8950 -9.8604 -1.2881 26 1 11.3494 -8.0149 -0.9947 27 6 5.8926 -6.0894 -3.9713 28 6 4.5352 -5.3430 -3.9692 29 1 4.4921 -4.6087 -4.7736 30 8 3.4452 -6.2626 -4.0593 31 1 -0.5399 -0.9352 0.0004 32 1 -0.5400 0.9354 0.0004 33 1 1.3553 2.1336 0.0005 34 1 2.6902 1.3629 0.8900 35 1 2.6902 1.3628 -0.8900 36 1 2.9742 -1.1991 0.5888 37 1 1.4386 -2.0856 0.4334 38 1 0.5991 -2.7731 -1.7700 39 1 0.5281 -1.0577 -2.2394 40 1 1.4079 -2.2227 -3.2573 41 1 3.4940 -3.0209 -3.4322 42 1 6.2124 -3.2411 -2.6993 43 1 6.3485 -4.4227 -1.3690 44 1 8.6140 -5.2448 -2.1804 45 1 7.3538 -6.3844 -1.6501 46 1 9.6762 -7.7129 -1.9713 47 1 12.1172 -11.1546 -3.5730 48 1 6.2231 -6.2728 -4.9936 49 1 5.8118 -7.0291 -3.4250 50 1 3.3872 -6.7219 -4.9084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195526708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:25 Heat of formation + Delta-G solvation = -125.475903 kcal Electronic energy + Delta-G solvation = -29705.041825 eV Core-core repulsion = 25538.524090 eV Total energy + Delta-G solvation = -4166.517735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55325 -40.69320 -39.48780 -37.67811 -36.96706 -36.05320 -35.42641 -33.81153 -33.70897 -31.38823 -29.24790 -28.27300 -28.05548 -27.85956 -25.94633 -24.41950 -22.69737 -21.93309 -21.36644 -21.06677 -20.21989 -19.29965 -18.59303 -18.11645 -17.88486 -17.34320 -16.93465 -16.53480 -16.32811 -16.16437 -15.86845 -15.53620 -15.24228 -15.10334 -14.96696 -14.58681 -14.48054 -14.31314 -14.19055 -14.09592 -13.88921 -13.72403 -13.45001 -13.30980 -13.12338 -13.05416 -12.92640 -12.63342 -12.46851 -12.43560 -12.20021 -12.00358 -11.91557 -11.85205 -11.76135 -11.53320 -11.19802 -10.77414 -10.38262 -10.27587 -10.21512 -9.86893 -9.34198 -8.43634 -6.04129 1.28639 1.32734 1.33730 1.41776 1.59204 1.89266 2.06186 2.20251 2.52281 2.91307 3.12377 3.22526 3.48585 3.59228 3.80049 3.88999 3.91684 3.95811 4.10227 4.16463 4.21010 4.25550 4.26934 4.32450 4.42010 4.46836 4.61150 4.68431 4.81487 4.82457 4.86014 4.88765 4.94117 4.95497 5.08238 5.10306 5.18375 5.22412 5.29777 5.39452 5.49380 5.73840 5.79144 5.85979 5.95539 6.02992 6.49572 6.55610 6.72728 6.84675 7.20954 7.35369 7.90129 8.73454 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.002045 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.050859 B =13685.669605 C =14473.118318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.121 4.121 4 C -0.066 4.066 5 C -0.094 4.094 6 H 0.123 0.877 7 C -0.142 4.142 8 C 0.516 3.484 9 O -0.582 6.582 10 N -0.702 5.702 11 C 0.138 3.862 12 H 0.074 0.926 13 C 0.039 3.961 14 N -0.511 5.511 15 C 0.044 3.956 16 C 0.450 3.550 17 O -0.602 6.602 18 N -0.590 5.590 19 C -0.326 4.326 20 H 0.060 0.940 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.960 3.040 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.233 1.233 27 C 0.033 3.967 28 C 0.098 3.902 29 H 0.104 0.896 30 O -0.570 6.570 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.417 0.583 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.123 0.877 45 H 0.073 0.927 46 H 0.388 0.612 47 H 0.279 0.721 48 H 0.084 0.916 49 H 0.028 0.972 50 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.173 24.466 7.206 33.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.129 4.129 3 C -0.177 4.177 4 C -0.104 4.104 5 C -0.115 4.115 6 H 0.141 0.859 7 C -0.200 4.200 8 C 0.304 3.696 9 O -0.462 6.462 10 N -0.354 5.354 11 C 0.031 3.969 12 H 0.092 0.908 13 C -0.090 4.090 14 N -0.237 5.237 15 C -0.087 4.087 16 C 0.237 3.763 17 O -0.486 6.486 18 N -0.231 5.231 19 C -0.455 4.455 20 H 0.078 0.922 21 C -0.211 4.211 22 N -0.571 5.571 23 Si 0.780 3.220 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.156 1.156 27 C -0.095 4.095 28 C 0.038 3.962 29 H 0.122 0.878 30 O -0.378 6.378 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.255 0.745 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.140 0.860 45 H 0.091 0.909 46 H 0.224 0.776 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.047 0.953 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.917 24.329 7.372 32.921 hybrid contribution 0.519 -1.472 0.416 1.615 sum -20.398 22.857 7.788 31.610 Atomic orbital electron populations 1.23875 0.95085 1.02373 1.01643 1.21724 0.95582 0.95306 1.00281 1.20916 1.00480 0.93783 1.02567 1.20402 1.00176 0.94823 0.94973 1.21242 0.97119 0.94660 0.98488 0.85942 1.21846 0.95396 1.03005 0.99732 1.21294 0.79284 0.86054 0.82959 1.90700 1.59592 1.63266 1.32620 1.45758 1.51934 1.27948 1.09775 1.21856 0.90740 0.87033 0.97228 0.90778 1.23298 0.90288 0.98863 0.96549 1.63421 1.13752 1.19192 1.27325 1.22189 0.97338 0.94896 0.94298 1.20687 0.82248 0.84500 0.88823 1.90513 1.63733 1.73726 1.20603 1.42035 1.36749 1.30742 1.13583 1.19000 1.19923 1.09922 0.96698 0.92200 1.26055 0.96055 0.94826 1.04207 1.69785 1.28314 1.19975 1.39066 0.85431 0.78737 0.80723 0.77092 1.18422 1.19829 1.15640 1.23546 0.90970 0.93885 1.01123 1.23165 0.85046 0.91232 0.96746 0.87809 1.86442 1.48927 1.59470 1.42988 0.88687 0.87268 0.91094 0.91804 0.90755 0.91777 0.92344 0.93398 0.89737 0.90646 0.74468 0.87981 0.91564 0.85956 0.90941 0.77636 0.91113 0.89757 0.95316 0.74920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 12.51 67.78 0.85 -1.15 16 2 C -0.13 -1.48 4.79 -16.48 -0.08 -1.56 16 3 C -0.12 -1.05 10.12 71.24 0.72 -0.33 16 4 C -0.07 -1.01 4.22 29.85 0.13 -0.88 16 5 C -0.09 -1.19 2.72 -11.54 -0.03 -1.23 16 6 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 7 C -0.14 -1.39 8.72 71.98 0.63 -0.76 16 8 C 0.52 10.31 7.15 87.66 0.63 10.94 16 9 O -0.58 -17.10 15.64 -3.02 -0.05 -17.15 16 10 N -0.70 -11.94 5.02 -436.95 -2.19 -14.13 16 11 C 0.14 3.19 2.97 46.17 0.14 3.33 16 12 H 0.07 2.18 7.69 -2.38 -0.02 2.16 16 13 C 0.04 0.92 6.62 86.64 0.57 1.49 16 14 N -0.51 -15.44 5.21 -890.10 -4.64 -20.07 16 15 C 0.04 1.42 5.32 85.56 0.45 1.88 16 16 C 0.45 20.25 7.31 87.66 0.64 20.89 16 17 O -0.60 -31.86 13.13 -3.07 -0.04 -31.90 16 18 N -0.59 -27.98 5.09 -306.98 -1.56 -29.54 16 19 C -0.33 -19.02 10.16 84.04 0.85 -18.16 16 20 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 22 N -0.93 -55.94 13.96 21.66 0.30 -55.64 16 23 Si 0.96 39.23 27.74 68.60 1.90 41.14 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 27 C 0.03 1.05 4.68 86.77 0.41 1.46 16 28 C 0.10 2.21 4.03 31.98 0.13 2.34 16 29 H 0.10 1.79 8.00 -2.39 -0.02 1.77 16 30 O -0.57 -12.86 13.47 -148.98 -2.01 -14.87 16 31 H 0.09 1.02 7.99 -2.91 -0.02 0.99 16 32 H 0.11 0.85 7.83 -2.91 -0.02 0.83 16 33 H 0.07 0.48 7.78 -2.39 -0.02 0.46 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.06 1.16 7.95 -2.39 -0.02 1.14 16 37 H 0.06 1.08 7.99 -2.39 -0.02 1.06 16 38 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.66 6.52 -2.39 -0.02 0.64 16 40 H 0.07 0.52 7.56 -2.39 -0.02 0.50 16 41 H 0.42 4.40 7.93 -92.71 -0.74 3.67 16 42 H 0.10 2.08 8.03 -2.38 -0.02 2.06 16 43 H 0.07 1.60 7.50 -2.38 -0.02 1.59 16 44 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.07 2.10 7.96 -2.39 -0.02 2.09 16 46 H 0.39 15.52 5.76 -92.70 -0.53 14.99 16 47 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.08 3.12 6.71 -2.39 -0.02 3.10 16 49 H 0.03 1.05 7.53 -2.39 -0.02 1.03 16 50 H 0.40 6.06 9.12 -74.05 -0.68 5.39 16 Total: -1.00 -80.45 403.07 -2.82 -83.27 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -1.04 Total: 40.85 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 6.50 Total: 18.05 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -8.09 Total: -119.39 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -2.09 Total: -63.92 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.14 kcal Total: -80.45 -2.82 -83.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195526708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.210 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds