Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46842 * 2 1 4 4 C 1.52996 * 109.46854 * 119.99462 * 2 1 3 5 5 C 1.50695 * 109.47590 * 295.00206 * 4 2 1 6 6 O 1.21279 * 120.00059 * 359.97438 * 5 4 2 7 7 N 1.34784 * 120.00196 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99695 * 179.97438 * 7 5 4 9 9 H 1.08995 * 110.29189 * 32.87097 * 8 7 5 10 10 C 1.54380 * 110.40888 * 270.68147 * 8 7 5 11 11 N 1.48555 * 104.59665 * 264.91508 * 10 8 7 12 12 C 1.46900 * 111.00033 * 200.95952 * 11 10 8 13 13 C 1.50700 * 109.47133 * 190.00049 * 12 11 10 14 14 O 1.21290 * 120.00113 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00129 * 180.02562 * 13 12 11 16 16 C 1.37088 * 119.99936 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00353 * 359.97438 * 16 15 13 18 18 C 1.38957 * 120.00119 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99587 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00178 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47073 * 60.00320 * 20 18 16 22 22 H 1.48506 * 109.46827 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47109 * 299.99593 * 20 18 16 24 24 C 1.48718 * 104.28814 * 320.57621 * 11 10 8 25 25 C 1.54259 * 110.31961 * 155.00023 * 8 7 5 26 26 H 1.08996 * 110.32601 * 359.97438 * 25 8 7 27 27 O 1.42903 * 110.32387 * 237.89477 * 25 8 7 28 28 C 1.53000 * 109.46973 * 239.99797 * 2 1 3 29 29 C 1.52998 * 117.49856 * 128.62274 * 28 2 1 30 30 C 1.52995 * 117.49890 * 60.00164 * 28 2 1 31 31 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47375 * 300.00425 * 1 2 3 33 33 H 1.09000 * 109.47118 * 59.99730 * 1 2 3 34 34 H 1.09006 * 109.47110 * 174.99488 * 4 2 1 35 35 H 1.09004 * 109.47153 * 55.00083 * 4 2 1 36 36 H 0.96991 * 119.99518 * 359.97438 * 7 5 4 37 37 H 1.08996 * 110.41187 * 23.69668 * 10 8 7 38 38 H 1.09002 * 110.40531 * 146.13462 * 10 8 7 39 39 H 1.09000 * 109.47405 * 310.00126 * 12 11 10 40 40 H 1.08996 * 109.46831 * 70.00357 * 12 11 10 41 41 H 0.97003 * 119.99785 * 0.02562 * 15 13 12 42 42 H 0.97001 * 119.99874 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.39291 * 280.63594 * 24 11 10 44 44 H 1.09004 * 110.51042 * 158.14906 * 24 11 10 45 45 H 0.96700 * 114.00311 * 181.42752 * 27 25 8 46 46 H 1.09001 * 115.54514 * 274.32706 * 28 2 1 47 47 H 1.09006 * 117.49856 * 0.02562 * 29 28 2 48 48 H 1.09002 * 117.49867 * 145.01363 * 29 28 2 49 49 H 1.08998 * 117.50200 * 214.97825 * 30 28 2 50 50 H 1.08998 * 117.49860 * 0.02562 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 8 1.0116 1.0875 2.3632 7 7 1.9852 -0.3912 3.7002 8 6 1.5981 0.3658 4.8932 9 1 0.6401 0.8602 4.7328 10 6 2.6844 1.4037 5.2482 11 7 3.5334 0.7254 6.2611 12 6 4.2893 1.7037 7.0546 13 6 5.3132 0.9851 7.8951 14 8 5.4047 -0.2230 7.8382 15 7 6.1274 1.6849 8.7099 16 6 7.0592 1.0312 9.4740 17 1 7.1406 -0.0446 9.4234 18 6 7.8982 1.7526 10.3145 19 7 7.7988 3.0615 10.3765 20 14 9.1674 0.8619 11.3562 21 1 10.0995 0.1174 10.4717 22 1 9.9311 1.8508 12.1589 23 1 8.4811 -0.0904 12.2658 24 6 2.5666 -0.0185 7.1117 25 6 1.5205 -0.5682 6.1185 26 1 1.7700 -1.5899 5.8322 27 8 0.2145 -0.5211 6.6966 28 6 2.0400 -0.7213 -1.2492 29 6 3.0741 0.0051 -2.1117 30 6 1.6357 -0.1496 -2.6095 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.1263 -0.7995 1.2056 35 1 1.6053 -1.7197 1.2953 36 1 2.4891 -1.2151 3.7908 37 1 3.2727 1.6552 4.3658 38 1 2.2301 2.2997 5.6714 39 1 4.7932 2.4021 6.3865 40 1 3.6057 2.2508 7.7038 41 1 6.0540 2.6510 8.7556 42 1 8.3848 3.5652 10.9629 43 1 2.0945 0.6543 7.8276 44 1 3.0655 -0.8373 7.6303 45 1 0.1129 -1.0726 7.4844 46 1 2.1267 -1.8045 -1.1641 47 1 3.3915 0.9967 -1.7889 48 1 3.8416 -0.6003 -2.5941 49 1 1.4568 -0.8566 -3.4196 50 1 1.0068 0.7406 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199180721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -95.126654 kcal Electronic energy + Delta-G solvation = -29491.545505 eV Core-core repulsion = 25326.343812 eV Total energy + Delta-G solvation = -4165.201692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.43875 -39.25215 -38.12512 -37.72403 -35.83071 -34.45807 -33.80959 -33.38698 -31.29128 -30.34755 -28.50328 -27.66643 -26.32751 -24.36447 -23.86113 -22.55268 -21.67097 -20.99600 -20.41202 -19.95392 -19.20840 -17.93879 -17.68358 -17.19540 -16.34340 -16.15005 -15.73771 -15.56532 -15.22414 -14.93866 -14.72947 -14.50923 -14.17748 -13.87414 -13.78604 -13.68706 -13.31220 -13.17885 -13.05512 -12.62535 -12.39289 -12.28251 -12.09795 -11.87051 -11.74975 -11.57591 -11.51981 -11.35365 -11.29033 -11.01329 -10.99546 -10.80564 -10.58932 -10.46089 -10.24361 -10.21198 -10.17637 -9.78704 -9.50674 -9.20084 -8.58243 -8.09257 -7.97573 -6.43182 -3.84228 2.53305 2.93507 3.18193 3.24229 3.28107 3.50380 3.82104 3.89109 4.12244 4.28296 4.29613 4.44448 4.51259 4.61549 4.65149 4.73550 4.89854 4.95240 5.01245 5.12530 5.15193 5.22247 5.29750 5.35174 5.35518 5.39502 5.40612 5.58842 5.61400 5.64039 5.65765 5.70266 5.77597 5.81633 5.83149 5.92886 5.94661 6.13966 6.14295 6.20373 6.23923 6.41246 6.92105 7.07328 7.39010 7.46533 7.53019 8.03758 8.12587 8.59843 9.16112 9.52590 10.04240 10.74460 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.002034 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.611456 B =13761.307305 C =14848.138803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 H 0.079 0.921 4 C -0.135 4.135 5 C 0.516 3.484 6 O -0.538 6.538 7 N -0.716 5.716 8 C 0.150 3.850 9 H 0.107 0.893 10 C 0.023 3.977 11 N -0.479 5.479 12 C 0.034 3.966 13 C 0.445 3.555 14 O -0.579 6.579 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.006 3.994 25 C 0.094 3.906 26 H 0.073 0.927 27 O -0.563 6.563 28 C -0.149 4.149 29 C -0.182 4.182 30 C -0.179 4.179 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.404 0.596 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.052 0.948 44 H 0.102 0.898 45 H 0.384 0.616 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 -6.294 -18.505 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.063 4.063 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.303 3.697 6 O -0.415 6.415 7 N -0.368 5.368 8 C 0.044 3.956 9 H 0.125 0.875 10 C -0.106 4.106 11 N -0.204 5.204 12 C -0.098 4.098 13 C 0.231 3.769 14 O -0.463 6.463 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.122 4.122 25 C 0.034 3.966 26 H 0.091 0.909 27 O -0.369 6.369 28 C -0.168 4.168 29 C -0.219 4.219 30 C -0.216 4.216 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.239 0.761 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.232 0.768 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.024 -6.162 -19.235 24.589 hybrid contribution 0.622 0.051 1.563 1.683 sum -13.402 -6.112 -17.672 23.006 Atomic orbital electron populations 1.21926 0.94419 1.01451 1.02942 1.20451 0.96362 0.98996 0.90453 0.90299 1.21722 1.03286 1.00119 0.92347 1.20698 0.78764 0.85750 0.84523 1.90673 1.39811 1.24531 1.86529 1.45990 1.57646 1.27870 1.05279 1.21437 0.98797 0.91791 0.83545 0.87516 1.23574 0.94221 0.95622 0.97222 1.65149 1.20464 1.22602 1.12157 1.22079 0.96821 0.94228 0.96663 1.19664 0.85005 0.88205 0.84066 1.90492 1.72646 1.13958 1.69231 1.41856 1.31486 1.09525 1.37248 1.19632 1.11022 0.93902 1.18342 0.87993 1.25270 0.98883 0.95547 0.98280 1.69606 1.39825 1.05483 1.39366 0.85914 0.80124 0.78630 0.79515 1.19896 1.20979 1.19946 1.23925 0.92761 1.00209 0.95334 1.22762 0.82504 0.98658 0.92645 0.90902 1.86483 1.30522 1.72171 1.47681 1.22357 1.03715 0.99106 0.91589 1.23043 0.92469 1.02188 1.04152 1.22919 0.98184 1.03347 0.97111 0.93346 0.90614 0.92936 0.88523 0.88864 0.76137 0.89434 0.92784 0.89175 0.92935 0.77494 0.91806 0.92945 0.87955 0.76841 0.87824 0.88708 0.88930 0.88990 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.77 37.16 0.33 -1.02 16 2 C -0.04 -0.37 2.19 -90.62 -0.20 -0.57 16 3 H 0.08 0.80 7.71 -51.93 -0.40 0.40 16 4 C -0.13 -1.06 5.16 -27.89 -0.14 -1.20 16 5 C 0.52 5.68 7.55 -10.98 -0.08 5.60 16 6 O -0.54 -7.72 13.62 5.56 0.08 -7.64 16 7 N -0.72 -7.51 5.07 -52.47 -0.27 -7.77 16 8 C 0.15 1.85 3.21 -66.55 -0.21 1.64 16 9 H 0.11 1.48 7.40 -51.93 -0.38 1.10 16 10 C 0.02 0.31 6.18 -2.18 -0.01 0.30 16 11 N -0.48 -7.69 4.97 -231.28 -1.15 -8.84 16 12 C 0.03 0.60 5.32 -4.98 -0.03 0.57 16 13 C 0.45 10.33 7.63 -10.98 -0.08 10.25 16 14 O -0.58 -15.19 14.80 5.55 0.08 -15.11 16 15 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 16 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 17 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 18 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 19 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 20 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 24 C 0.01 0.09 5.67 -2.10 -0.01 0.08 16 25 C 0.09 1.11 4.18 -25.35 -0.11 1.00 16 26 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 27 O -0.56 -6.28 13.27 -35.23 -0.47 -6.75 16 28 C -0.15 -1.07 5.15 -90.62 -0.47 -1.53 16 29 C -0.18 -1.28 10.18 -26.73 -0.27 -1.55 16 30 C -0.18 -1.22 9.73 -26.74 -0.26 -1.48 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.85 5.95 -51.93 -0.31 0.55 16 33 H 0.05 0.44 7.29 -51.93 -0.38 0.06 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.40 3.49 8.36 -40.82 -0.34 3.15 16 37 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 38 H 0.05 0.72 8.00 -51.93 -0.42 0.30 16 39 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 40 H 0.05 0.86 7.77 -51.93 -0.40 0.45 16 41 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 0.77 7.69 -51.93 -0.40 0.37 16 44 H 0.10 1.70 7.24 -51.93 -0.38 1.33 16 45 H 0.38 2.74 9.11 45.56 0.42 3.15 16 46 H 0.10 0.66 8.11 -51.93 -0.42 0.23 16 47 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.66 7.61 -51.93 -0.40 0.26 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -33.09 405.21 -9.18 -42.27 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -7.41 Total: 15.63 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.79 Total: 4.17 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.75 Total: -54.53 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.31 Total: -29.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.09 -9.18 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199180721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.856 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds