Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47018 * 2 1 4 4 C 1.52995 * 109.47126 * 239.99441 * 2 1 3 5 5 C 1.50698 * 109.47174 * 65.00679 * 4 2 1 6 6 O 1.21283 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00343 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00376 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.28731 * 34.29630 * 8 7 5 10 10 C 1.54382 * 110.40946 * 272.11197 * 8 7 5 11 11 N 1.48561 * 104.59231 * 217.20800 * 10 8 7 12 12 C 1.46903 * 110.99547 * 159.04054 * 11 10 8 13 13 C 1.50709 * 109.46622 * 174.70257 * 12 11 10 14 14 O 1.21293 * 120.00303 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99647 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99997 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99732 * 0.02562 * 16 15 13 18 18 C 1.38943 * 120.00063 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00356 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99958 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47562 * 59.99801 * 20 18 16 22 22 H 1.48501 * 109.47141 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47020 * 299.99762 * 20 18 16 24 24 C 1.48551 * 104.22369 * 39.48238 * 11 10 8 25 25 C 1.54259 * 110.32785 * 156.42387 * 8 7 5 26 26 H 1.09004 * 110.32056 * 0.09932 * 25 8 7 27 27 O 1.42898 * 110.32475 * 237.99774 * 25 8 7 28 28 C 1.53004 * 109.47146 * 119.99320 * 2 1 3 29 29 C 1.52997 * 117.50306 * 248.75195 * 28 2 1 30 30 C 1.52992 * 117.50028 * 180.08597 * 28 2 1 31 31 H 1.08996 * 109.47190 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47562 * 300.00579 * 1 2 3 33 33 H 1.09001 * 109.46894 * 60.00680 * 1 2 3 34 34 H 1.08992 * 109.47422 * 304.99941 * 4 2 1 35 35 H 1.09011 * 109.46796 * 184.99632 * 4 2 1 36 36 H 0.97008 * 120.00082 * 359.97438 * 7 5 4 37 37 H 1.09005 * 110.40941 * 335.98484 * 10 8 7 38 38 H 1.08998 * 110.41294 * 98.42738 * 10 8 7 39 39 H 1.08991 * 109.47335 * 294.70266 * 12 11 10 40 40 H 1.08999 * 109.47033 * 54.70867 * 12 11 10 41 41 H 0.97000 * 120.00144 * 0.02562 * 15 13 12 42 42 H 0.96997 * 120.00340 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.40983 * 201.73644 * 24 11 10 44 44 H 1.09000 * 110.41267 * 79.29794 * 24 11 10 45 45 H 0.96701 * 114.00142 * 179.97438 * 27 25 8 46 46 H 1.09008 * 115.54769 * 34.41837 * 28 2 1 47 47 H 1.09000 * 117.49550 * 359.97438 * 29 28 2 48 48 H 1.09001 * 117.50239 * 145.01740 * 29 28 2 49 49 H 1.09002 * 117.50133 * 214.97562 * 30 28 2 50 50 H 1.09001 * 117.50028 * 359.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4765 6 8 1.0111 1.0869 -2.3633 7 7 1.9845 -0.3921 -3.7000 8 6 1.5966 0.3642 -4.8933 9 1 1.6114 1.4338 -4.6842 10 6 0.1947 -0.0691 -5.3731 11 7 0.2791 -0.0336 -6.8559 12 6 -0.7660 -0.8688 -7.4627 13 6 -0.7321 -0.7064 -8.9606 14 8 0.0822 0.0327 -9.4722 15 7 -1.6067 -1.3826 -9.7317 16 6 -1.5755 -1.2353 -11.0943 17 1 -0.8499 -0.5778 -11.5499 18 6 -2.4767 -1.9327 -11.8892 19 7 -3.3586 -2.7339 -11.3350 20 14 -2.4338 -1.7326 -13.7460 21 1 -1.1045 -2.1515 -14.2585 22 1 -3.4900 -2.5772 -14.3595 23 1 -2.6732 -0.3094 -14.0961 24 6 1.6312 -0.5700 -7.1575 25 6 2.5416 0.0347 -6.0672 26 1 3.2930 -0.6911 -5.7561 27 8 3.1708 1.2246 -6.5469 28 6 2.0400 -0.7211 1.2494 29 6 2.7392 0.1233 2.3166 30 6 3.5549 -0.8262 1.4354 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.6054 -1.7198 -1.2950 35 1 3.1264 -0.7995 -1.2054 36 1 2.4884 -1.2161 -3.7906 37 1 -0.0296 -1.0788 -5.0291 38 1 -0.5617 0.6311 -5.0185 39 1 -0.5906 -1.9136 -7.2064 40 1 -1.7414 -0.5611 -7.0859 41 1 -2.2581 -1.9734 -9.3225 42 1 -3.9880 -3.2205 -11.8900 43 1 1.9564 -0.2469 -8.1464 44 1 1.6317 -1.6580 -7.0928 45 1 3.7773 1.0784 -7.2857 46 1 1.4318 -1.5593 1.5896 47 1 2.8362 1.1925 2.1284 48 1 2.5914 -0.1596 3.3588 49 1 3.9435 -1.7332 1.8985 50 1 4.1884 -0.3819 0.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199180723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -92.838145 kcal Electronic energy + Delta-G solvation = -29481.368122 eV Core-core repulsion = 25316.265667 eV Total energy + Delta-G solvation = -4165.102455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50293 -39.29763 -38.16136 -37.70099 -35.65610 -34.58538 -33.80975 -33.43855 -31.28218 -30.38545 -28.56527 -27.72187 -26.29245 -24.31669 -23.74001 -22.73469 -21.56368 -21.12264 -20.74971 -19.93172 -19.19970 -17.90994 -17.59564 -17.05074 -16.38042 -16.02411 -15.95016 -15.63259 -15.28067 -15.03015 -14.72523 -14.55605 -14.13895 -14.10640 -13.85676 -13.53261 -13.25098 -13.20733 -12.91043 -12.74359 -12.47364 -12.07439 -11.96400 -11.92137 -11.87364 -11.63459 -11.53657 -11.49129 -11.24020 -11.15127 -10.93661 -10.80569 -10.57819 -10.44674 -10.34552 -10.22194 -10.08142 -9.82525 -9.48982 -9.32880 -8.53294 -8.05164 -7.95411 -6.41964 -3.82875 2.44357 2.79824 3.19619 3.25421 3.29744 3.40709 3.89278 4.01151 4.11446 4.20839 4.27408 4.41017 4.48659 4.54481 4.61332 4.73427 4.77845 4.88287 4.91031 5.10699 5.15937 5.16375 5.21814 5.26489 5.27379 5.33513 5.40921 5.48507 5.52093 5.59182 5.71157 5.72907 5.74911 5.79162 5.83815 5.85731 5.97893 6.05585 6.15376 6.24469 6.25269 6.30908 7.00816 7.12523 7.24905 7.54551 7.65190 8.03303 8.05355 8.61414 9.17663 9.53835 10.05805 10.75740 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.001874 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.522137 B =14936.335118 C =15621.188814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 H 0.079 0.921 4 C -0.135 4.135 5 C 0.514 3.486 6 O -0.530 6.530 7 N -0.725 5.725 8 C 0.147 3.853 9 H 0.112 0.888 10 C 0.024 3.976 11 N -0.475 5.475 12 C 0.034 3.966 13 C 0.445 3.555 14 O -0.577 6.577 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.007 3.993 25 C 0.098 3.902 26 H 0.063 0.937 27 O -0.552 6.552 28 C -0.149 4.149 29 C -0.179 4.179 30 C -0.183 4.183 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.398 0.602 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.108 0.892 44 H 0.045 0.955 45 H 0.382 0.618 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.523 -1.730 24.185 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.301 3.699 6 O -0.406 6.406 7 N -0.378 5.378 8 C 0.042 3.958 9 H 0.130 0.870 10 C -0.105 4.105 11 N -0.199 5.199 12 C -0.098 4.098 13 C 0.230 3.770 14 O -0.460 6.460 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.121 4.121 25 C 0.038 3.962 26 H 0.081 0.919 27 O -0.357 6.357 28 C -0.167 4.167 29 C -0.216 4.216 30 C -0.220 4.220 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.233 0.767 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.064 0.936 45 H 0.230 0.770 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.013 0.217 24.074 26.905 hybrid contribution 0.124 -2.074 -0.891 2.261 sum 12.137 -1.856 23.183 26.233 Atomic orbital electron populations 1.21927 0.94111 1.01543 1.03252 1.20459 0.96674 0.98823 0.90336 0.90294 1.21747 1.02963 1.00357 0.92419 1.20743 0.79020 0.85732 0.84438 1.90702 1.39068 1.24351 1.86444 1.46104 1.58352 1.27602 1.05749 1.21523 0.92460 0.98732 0.83115 0.86971 1.23547 0.97127 1.00543 0.89284 1.65136 1.01467 1.48401 1.04921 1.22092 0.96596 0.95330 0.95734 1.19668 0.85048 0.84997 0.87317 1.90505 1.40298 1.40823 1.74423 1.41848 1.30965 1.40395 1.06922 1.19645 1.16820 1.25303 0.81100 0.87968 1.25254 0.95758 0.96202 1.00714 1.69600 1.19724 1.28369 1.36684 0.85917 0.77850 0.78387 0.82047 1.19959 1.20992 1.19870 1.23914 0.90191 0.96951 1.01083 1.22661 0.93357 0.86982 0.93230 0.91931 1.86517 1.63018 1.31770 1.54412 1.22413 0.94640 1.01963 0.97685 1.23019 1.04539 0.97751 0.96244 1.22974 0.93906 1.01830 1.03327 0.93265 0.92776 0.90402 0.88740 0.88882 0.76715 0.93521 0.89139 0.93266 0.89082 0.77521 0.91834 0.87352 0.93634 0.76957 0.87747 0.88723 0.88922 0.88873 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.92 37.16 0.33 -0.98 16 2 C -0.04 -0.34 2.19 -90.62 -0.20 -0.54 16 3 H 0.08 0.74 7.71 -51.93 -0.40 0.34 16 4 C -0.13 -0.92 5.09 -27.89 -0.14 -1.06 16 5 C 0.51 5.25 7.55 -10.99 -0.08 5.16 16 6 O -0.53 -7.49 13.64 5.55 0.08 -7.41 16 7 N -0.73 -6.68 5.08 -52.47 -0.27 -6.95 16 8 C 0.15 1.84 3.19 -66.55 -0.21 1.62 16 9 H 0.11 1.72 7.44 -51.93 -0.39 1.34 16 10 C 0.02 0.34 6.20 -2.18 -0.01 0.32 16 11 N -0.48 -8.08 5.06 -231.41 -1.17 -9.25 16 12 C 0.03 0.62 5.30 -4.97 -0.03 0.59 16 13 C 0.44 10.49 7.58 -10.98 -0.08 10.41 16 14 O -0.58 -15.50 14.42 5.55 0.08 -15.42 16 15 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 16 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 20 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 24 C 0.01 0.11 5.54 -2.19 -0.01 0.09 16 25 C 0.10 1.17 4.18 -25.35 -0.11 1.07 16 26 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 27 O -0.55 -7.28 13.27 -35.23 -0.47 -7.75 16 28 C -0.15 -0.94 5.14 -90.62 -0.47 -1.40 16 29 C -0.18 -1.08 10.18 -26.69 -0.27 -1.36 16 30 C -0.18 -1.02 9.68 -26.70 -0.26 -1.28 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.49 7.13 -51.92 -0.37 0.12 16 36 H 0.40 2.47 8.33 -40.82 -0.34 2.13 16 37 H 0.05 0.58 7.91 -51.93 -0.41 0.16 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 40 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 41 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.11 1.93 6.85 -51.93 -0.36 1.57 16 44 H 0.05 0.62 7.82 -51.93 -0.41 0.22 16 45 H 0.38 3.55 9.12 45.56 0.42 3.97 16 46 H 0.10 0.61 8.11 -51.92 -0.42 0.19 16 47 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.51 7.59 -51.93 -0.39 0.12 16 LS Contribution 404.50 15.07 6.10 6.10 Total: -1.00 -34.27 404.50 -9.19 -43.46 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -7.40 Total: 14.65 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.78 Total: 4.69 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.77 Total: -54.31 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.31 Total: -30.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.27 -9.19 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199180723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.380 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds