Wall clock time and date at job start Sat Apr 11 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47018 * 2 1 4 4 C 1.52995 * 109.47126 * 239.99441 * 2 1 3 5 5 C 1.50698 * 109.47174 * 65.00679 * 4 2 1 6 6 O 1.21283 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00343 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00376 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.28731 * 34.29630 * 8 7 5 10 10 C 1.54382 * 110.40946 * 272.11197 * 8 7 5 11 11 N 1.48561 * 104.59231 * 217.20800 * 10 8 7 12 12 C 1.46903 * 110.99547 * 159.04054 * 11 10 8 13 13 C 1.50709 * 109.46622 * 174.70257 * 12 11 10 14 14 O 1.21293 * 120.00303 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99647 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99997 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99732 * 0.02562 * 16 15 13 18 18 C 1.38943 * 120.00063 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00356 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99958 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47562 * 59.99801 * 20 18 16 22 22 H 1.48501 * 109.47141 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47020 * 299.99762 * 20 18 16 24 24 C 1.48551 * 104.22369 * 39.48238 * 11 10 8 25 25 C 1.54259 * 110.32785 * 156.42387 * 8 7 5 26 26 H 1.09004 * 110.32056 * 0.09932 * 25 8 7 27 27 O 1.42898 * 110.32475 * 237.99774 * 25 8 7 28 28 C 1.53004 * 109.47146 * 119.99320 * 2 1 3 29 29 C 1.52997 * 117.50306 * 248.75195 * 28 2 1 30 30 C 1.52992 * 117.50028 * 180.08597 * 28 2 1 31 31 H 1.08996 * 109.47190 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47562 * 300.00579 * 1 2 3 33 33 H 1.09001 * 109.46894 * 60.00680 * 1 2 3 34 34 H 1.08992 * 109.47422 * 304.99941 * 4 2 1 35 35 H 1.09011 * 109.46796 * 184.99632 * 4 2 1 36 36 H 0.97008 * 120.00082 * 359.97438 * 7 5 4 37 37 H 1.09005 * 110.40941 * 335.98484 * 10 8 7 38 38 H 1.08998 * 110.41294 * 98.42738 * 10 8 7 39 39 H 1.08991 * 109.47335 * 294.70266 * 12 11 10 40 40 H 1.08999 * 109.47033 * 54.70867 * 12 11 10 41 41 H 0.97000 * 120.00144 * 0.02562 * 15 13 12 42 42 H 0.96997 * 120.00340 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.40983 * 201.73644 * 24 11 10 44 44 H 1.09000 * 110.41267 * 79.29794 * 24 11 10 45 45 H 0.96701 * 114.00142 * 179.97438 * 27 25 8 46 46 H 1.09008 * 115.54769 * 34.41837 * 28 2 1 47 47 H 1.09000 * 117.49550 * 359.97438 * 29 28 2 48 48 H 1.09001 * 117.50239 * 145.01740 * 29 28 2 49 49 H 1.09002 * 117.50133 * 214.97562 * 30 28 2 50 50 H 1.09001 * 117.50028 * 359.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4765 6 8 1.0111 1.0869 -2.3633 7 7 1.9845 -0.3921 -3.7000 8 6 1.5966 0.3642 -4.8933 9 1 1.6114 1.4338 -4.6842 10 6 0.1947 -0.0691 -5.3731 11 7 0.2791 -0.0336 -6.8559 12 6 -0.7660 -0.8688 -7.4627 13 6 -0.7321 -0.7064 -8.9606 14 8 0.0822 0.0327 -9.4722 15 7 -1.6067 -1.3826 -9.7317 16 6 -1.5755 -1.2353 -11.0943 17 1 -0.8499 -0.5778 -11.5499 18 6 -2.4767 -1.9327 -11.8892 19 7 -3.3586 -2.7339 -11.3350 20 14 -2.4338 -1.7326 -13.7460 21 1 -1.1045 -2.1515 -14.2585 22 1 -3.4900 -2.5772 -14.3595 23 1 -2.6732 -0.3094 -14.0961 24 6 1.6312 -0.5700 -7.1575 25 6 2.5416 0.0347 -6.0672 26 1 3.2930 -0.6911 -5.7561 27 8 3.1708 1.2246 -6.5469 28 6 2.0400 -0.7211 1.2494 29 6 2.7392 0.1233 2.3166 30 6 3.5549 -0.8262 1.4354 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.6054 -1.7198 -1.2950 35 1 3.1264 -0.7995 -1.2054 36 1 2.4884 -1.2161 -3.7906 37 1 -0.0296 -1.0788 -5.0291 38 1 -0.5617 0.6311 -5.0185 39 1 -0.5906 -1.9136 -7.2064 40 1 -1.7414 -0.5611 -7.0859 41 1 -2.2581 -1.9734 -9.3225 42 1 -3.9880 -3.2205 -11.8900 43 1 1.9564 -0.2469 -8.1464 44 1 1.6317 -1.6580 -7.0928 45 1 3.7773 1.0784 -7.2857 46 1 1.4318 -1.5593 1.5896 47 1 2.8362 1.1925 2.1284 48 1 2.5914 -0.1596 3.3588 49 1 3.9435 -1.7332 1.8985 50 1 4.1884 -0.3819 0.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199180723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:30 Heat of formation + Delta-G solvation = -121.185678 kcal Electronic energy + Delta-G solvation = -29482.597363 eV Core-core repulsion = 25316.265667 eV Total energy + Delta-G solvation = -4166.331696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43418 -40.48064 -39.51691 -38.55784 -36.80921 -35.96890 -35.40896 -34.04809 -33.28755 -31.56002 -29.54477 -28.75189 -27.68810 -25.99376 -24.41555 -23.17184 -22.78716 -22.00968 -21.64357 -20.99809 -20.51103 -19.88775 -18.48978 -18.01119 -17.71650 -17.31549 -16.74140 -16.71326 -16.45088 -16.11488 -15.95614 -15.74632 -15.51146 -15.43446 -15.01429 -14.56210 -14.36335 -14.13290 -14.12846 -13.83222 -13.52437 -13.37097 -13.35309 -13.08877 -12.96942 -12.84223 -12.44946 -12.43099 -12.38988 -12.22812 -12.12631 -12.09966 -11.84179 -11.72409 -11.48310 -11.11348 -11.03047 -10.85183 -10.64753 -10.37057 -10.17701 -10.01160 -9.41024 -8.46418 -5.95167 1.39518 1.41656 1.52365 1.66317 1.98207 2.04724 2.28867 2.80673 2.95281 3.16746 3.20539 3.33161 3.57320 3.60720 3.77666 3.85595 3.99437 4.04300 4.12883 4.18609 4.23445 4.27683 4.33183 4.36510 4.43890 4.48179 4.55649 4.60155 4.66129 4.71653 4.76990 4.86038 4.88072 4.92958 5.01474 5.06299 5.19269 5.23609 5.32254 5.35435 5.40702 5.44700 5.56214 5.78354 5.84377 6.04622 6.54778 6.60471 6.83486 7.12803 7.29554 7.55885 8.11809 8.70743 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.001874 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.522137 B =14936.335118 C =15621.188814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 H 0.056 0.944 4 C -0.125 4.125 5 C 0.510 3.490 6 O -0.575 6.575 7 N -0.710 5.710 8 C 0.155 3.845 9 H 0.079 0.921 10 C 0.031 3.969 11 N -0.507 5.507 12 C 0.047 3.953 13 C 0.442 3.558 14 O -0.614 6.614 15 N -0.573 5.573 16 C -0.333 4.333 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.274 1.274 24 C 0.007 3.993 25 C 0.109 3.891 26 H 0.106 0.894 27 O -0.574 6.574 28 C -0.149 4.149 29 C -0.189 4.189 30 C -0.174 4.174 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.418 0.582 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.397 0.603 46 H 0.113 0.887 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.585 -3.968 25.427 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 H 0.074 0.926 4 C -0.165 4.165 5 C 0.299 3.701 6 O -0.454 6.454 7 N -0.364 5.364 8 C 0.048 3.952 9 H 0.097 0.903 10 C -0.098 4.098 11 N -0.231 5.231 12 C -0.084 4.084 13 C 0.229 3.771 14 O -0.500 6.500 15 N -0.211 5.211 16 C -0.463 4.463 17 H 0.097 0.903 18 C -0.212 4.212 19 N -0.561 5.561 20 Si 0.816 3.184 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.200 1.200 24 C -0.122 4.122 25 C 0.049 3.951 26 H 0.124 0.876 27 O -0.382 6.382 28 C -0.167 4.167 29 C -0.226 4.226 30 C -0.211 4.211 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.256 0.744 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.248 0.752 46 H 0.132 0.868 47 H 0.104 0.896 48 H 0.119 0.881 49 H 0.124 0.876 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.099 -2.063 25.333 28.594 hybrid contribution -0.199 -1.311 -1.235 1.812 sum 12.900 -3.373 24.098 27.541 Atomic orbital electron populations 1.21878 0.95065 1.01904 1.01753 1.20387 0.95870 0.98081 0.91815 0.92575 1.21769 1.04464 1.00492 0.89749 1.21423 0.78021 0.85294 0.85399 1.90702 1.41114 1.26521 1.87041 1.45914 1.58106 1.27917 1.04450 1.21189 0.92197 0.97343 0.84470 0.90297 1.23481 0.97693 1.01423 0.87167 1.65026 1.02101 1.49080 1.06938 1.21934 0.97916 0.97267 0.91318 1.20668 0.83450 0.83317 0.89650 1.90481 1.41500 1.42077 1.75919 1.41910 1.31671 1.41079 1.06448 1.19618 1.17583 1.26382 0.82687 0.90307 1.26025 0.94939 0.95430 1.04836 1.69662 1.19839 1.28423 1.38205 0.84994 0.78248 0.78318 0.76797 1.19530 1.19497 1.19960 1.23893 0.89800 0.98055 1.00418 1.22690 0.93579 0.87244 0.91632 0.87647 1.86481 1.63566 1.32916 1.55280 1.22329 0.95407 1.02043 0.96889 1.23081 1.05214 0.97517 0.96819 1.23047 0.93204 1.01931 1.02910 0.91885 0.92971 0.93200 0.86264 0.86527 0.74391 0.91243 0.90637 0.90467 0.87816 0.77055 0.91311 0.90804 0.91833 0.75229 0.86850 0.89615 0.88147 0.87593 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.92 71.98 0.64 -1.86 16 2 C -0.04 -0.61 2.19 -10.79 -0.02 -0.63 16 3 H 0.06 1.06 7.71 -2.38 -0.02 1.04 16 4 C -0.13 -1.36 5.09 29.85 0.15 -1.21 16 5 C 0.51 9.66 7.55 87.66 0.66 10.32 16 6 O -0.57 -16.49 13.64 -3.04 -0.04 -16.53 16 7 N -0.71 -11.33 5.08 -438.30 -2.23 -13.56 16 8 C 0.15 3.69 3.19 45.89 0.15 3.84 16 9 H 0.08 2.48 7.44 -2.39 -0.02 2.46 16 10 C 0.03 0.83 6.20 86.45 0.54 1.37 16 11 N -0.51 -16.99 5.06 -886.05 -4.48 -21.48 16 12 C 0.05 1.66 5.30 85.56 0.45 2.11 16 13 C 0.44 21.18 7.58 87.66 0.66 21.84 16 14 O -0.61 -34.04 14.42 -3.07 -0.04 -34.08 16 15 N -0.57 -29.50 5.29 -306.98 -1.62 -31.12 16 16 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 17 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 19 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 20 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.01 0.19 5.54 86.45 0.48 0.67 16 25 C 0.11 2.41 4.18 31.49 0.13 2.54 16 26 H 0.11 1.47 7.65 -2.38 -0.02 1.45 16 27 O -0.57 -14.82 13.27 -148.98 -1.98 -16.80 16 28 C -0.15 -1.54 5.14 -10.80 -0.06 -1.60 16 29 C -0.19 -2.03 10.18 30.62 0.31 -1.71 16 30 C -0.17 -1.47 9.68 30.62 0.30 -1.17 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.14 5.95 -2.39 -0.01 1.12 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 0.77 7.13 -2.38 -0.02 0.75 16 36 H 0.42 3.47 8.33 -92.70 -0.77 2.70 16 37 H 0.07 1.52 7.91 -2.38 -0.02 1.50 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.08 2.29 7.88 -2.39 -0.02 2.27 16 40 H 0.10 3.37 8.13 -2.39 -0.02 3.35 16 41 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 42 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.07 2.68 6.85 -2.39 -0.02 2.66 16 44 H 0.06 1.59 7.82 -2.39 -0.02 1.57 16 45 H 0.40 7.17 9.12 -74.06 -0.68 6.50 16 46 H 0.11 1.01 8.11 -2.38 -0.02 0.99 16 47 H 0.09 1.06 8.05 -2.39 -0.02 1.04 16 48 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.10 0.78 7.59 -2.39 -0.02 0.76 16 Total: -1.00 -77.42 404.50 -3.61 -81.03 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -1.20 Total: 40.74 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 5.68 Total: 16.16 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -8.05 Total: -115.47 kcal Atomic # 8 Polarization: -65.35 SS G_CDS: -2.06 Total: -67.41 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -77.42 -3.61 -81.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199180723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.153 kcal (2) G-P(sol) polarization free energy of solvation -77.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds