Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00078 * 2 1 4 4 H 1.08996 * 110.63804 * 26.85563 * 3 2 1 5 5 C 1.54327 * 110.86901 * 263.61029 * 3 2 1 6 6 N 1.47024 * 107.26774 * 219.37128 * 5 3 2 7 7 C 1.36941 * 125.64618 * 179.20447 * 6 5 3 8 8 H 1.08005 * 119.99780 * 179.68989 * 7 6 5 9 9 C 1.38813 * 119.99913 * 359.69358 * 7 6 5 10 10 N 1.31616 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47563 * 59.99703 * 11 9 7 13 13 H 1.48504 * 109.46777 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47166 * 299.99426 * 11 9 7 15 15 C 1.47426 * 108.70449 * 358.94057 * 6 5 3 16 16 C 1.54912 * 104.83261 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00012 * 81.06132 * 16 15 6 18 18 N 1.46497 * 111.00243 * 204.87751 * 16 15 6 19 19 C 1.34773 * 120.00133 * 273.54537 * 18 16 15 20 20 O 1.21282 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00079 * 180.02562 * 19 18 16 22 22 C 1.52998 * 109.47295 * 179.97438 * 21 19 18 23 23 H 1.09005 * 109.46996 * 305.00000 * 22 21 19 24 24 C 1.53003 * 109.47384 * 184.99404 * 22 21 19 25 25 N 1.46508 * 109.47097 * 64.99728 * 22 21 19 26 26 C 1.46762 * 124.34982 * 239.72469 * 25 22 21 27 27 C 1.54652 * 105.38397 * 162.85109 * 26 25 22 28 28 C 1.54630 * 101.68203 * 25.77176 * 27 26 25 29 29 C 1.34413 * 124.34740 * 60.02785 * 25 22 21 30 30 O 1.21282 * 124.94990 * 0.38347 * 29 25 22 31 31 H 1.08992 * 109.47089 * 300.00153 * 1 2 3 32 32 H 1.09000 * 109.46708 * 60.00384 * 1 2 3 33 33 H 1.08994 * 109.46840 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.88184 * 99.95552 * 5 3 2 35 35 H 1.09002 * 109.88385 * 338.78559 * 5 3 2 36 36 H 0.97001 * 119.99407 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36518 * 142.96440 * 15 6 5 38 38 H 1.08997 * 110.36787 * 265.28818 * 15 6 5 39 39 H 0.97002 * 119.99825 * 93.54988 * 18 16 15 40 40 H 1.09005 * 109.46994 * 299.99757 * 21 19 18 41 41 H 1.09001 * 109.47289 * 59.99307 * 21 19 18 42 42 H 1.09007 * 109.46304 * 60.00400 * 24 22 21 43 43 H 1.08996 * 109.47068 * 179.97438 * 24 22 21 44 44 H 1.08994 * 109.47105 * 300.00320 * 24 22 21 45 45 H 1.08993 * 110.24932 * 281.98800 * 26 25 22 46 46 H 1.09007 * 110.24183 * 43.98154 * 26 25 22 47 47 H 1.08995 * 111.19722 * 267.59889 * 27 26 25 48 48 H 1.08997 * 110.82242 * 143.77778 * 27 26 25 49 49 H 1.08998 * 110.48811 * 216.30575 * 28 27 26 50 50 H 1.08999 * 110.48815 * 93.66067 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3805 1.7424 -1.4331 6 7 3.6669 2.4499 -1.3550 7 6 4.3496 2.9841 -2.4151 8 1 5.2891 3.4914 -2.2521 9 6 3.8341 2.8737 -3.6992 10 7 2.6894 2.2551 -3.8979 11 14 4.7657 3.6017 -5.1454 12 1 6.1053 2.9682 -5.2409 13 1 4.0093 3.3504 -6.3985 14 1 4.9231 5.0649 -4.9468 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9172 0.3655 0.5364 18 7 3.2173 1.5207 2.1639 19 6 4.2053 1.1831 3.0160 20 8 5.2304 0.6927 2.5923 21 6 4.0360 1.4139 4.4956 22 6 5.2931 0.9467 5.2319 23 1 5.4996 -0.0923 4.9749 24 6 5.0737 1.0649 6.7414 25 7 6.4296 1.7827 4.8367 26 6 7.6501 1.2738 4.2002 27 6 8.3386 2.5135 3.5832 28 6 7.8006 3.6505 4.4827 29 6 6.4907 3.1134 5.0159 30 8 5.6220 3.7859 5.5298 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.6138 2.4096 -1.8269 35 1 2.4776 0.8664 -2.0743 36 1 2.3294 2.1776 -4.7953 37 1 5.1787 2.3788 0.1248 38 1 3.7842 3.4306 0.5171 39 1 2.3972 1.9125 2.5029 40 1 3.8791 2.4764 4.6819 41 1 3.1745 0.8510 4.8549 42 1 4.2281 0.4429 7.0354 43 1 5.9691 0.7316 7.2659 44 1 4.8672 2.1039 6.9983 45 1 8.2981 0.8100 4.9437 46 1 7.3973 0.5564 3.4193 47 1 8.0337 2.6587 2.5468 48 1 9.4228 2.4339 3.6618 49 1 7.6322 4.5536 3.8962 50 1 8.4927 3.8494 5.3009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213716851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -82.741847 kcal Electronic energy + Delta-G solvation = -31314.023399 eV Core-core repulsion = 27149.358752 eV Total energy + Delta-G solvation = -4164.664647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72503 -39.49382 -38.12101 -36.36175 -35.91261 -34.91589 -33.98585 -31.80596 -30.25023 -29.01026 -28.20141 -27.51005 -26.74685 -26.12285 -24.22387 -22.79020 -21.97860 -20.86378 -20.50482 -19.90612 -18.81178 -17.40925 -16.94719 -16.76407 -16.52728 -16.29577 -15.63205 -15.28809 -14.83388 -14.68250 -14.43867 -14.22294 -14.03299 -13.80060 -13.71223 -13.65719 -13.24488 -12.97981 -12.93247 -12.76660 -12.40160 -12.03909 -12.02801 -11.87774 -11.86012 -11.58436 -11.50567 -11.26783 -11.21984 -11.03622 -11.01746 -10.79354 -10.75513 -10.18017 -10.00817 -9.79131 -9.64641 -9.62071 -9.08576 -8.75128 -8.71416 -8.57552 -6.89102 -5.73450 -3.08483 2.57952 2.84440 2.97991 3.32265 3.41177 3.44966 3.46382 4.12132 4.29283 4.47410 4.50550 4.65555 4.72960 4.81633 4.95152 5.06730 5.10746 5.23259 5.32513 5.38204 5.42402 5.45671 5.48113 5.54077 5.55149 5.56317 5.64386 5.69791 5.75060 5.76920 5.81165 5.85599 5.90899 5.99310 6.02615 6.05659 6.17799 6.55151 6.57513 6.63235 6.87687 7.15477 7.24767 7.46962 7.68749 7.73164 7.85420 8.18291 8.20080 8.45133 9.17266 9.77467 10.40837 11.37924 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.003414 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.965441 B = 8199.934653 C = 9988.849125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.062 0.938 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.080 0.920 9 C -0.006 4.006 10 N -0.923 5.923 11 Si 0.914 3.086 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.133 3.867 16 C 0.135 3.865 17 H 0.102 0.898 18 N -0.718 5.718 19 C 0.516 3.484 20 O -0.537 6.537 21 C -0.162 4.162 22 C 0.174 3.826 23 H 0.096 0.904 24 C -0.167 4.167 25 N -0.601 5.601 26 C 0.104 3.896 27 C -0.131 4.131 28 C -0.157 4.157 29 C 0.517 3.483 30 O -0.540 6.540 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.021 0.979 39 H 0.395 0.605 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -3.553 19.943 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.097 0.903 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.005 3.995 16 C 0.030 3.970 17 H 0.120 0.880 18 N -0.368 5.368 19 C 0.302 3.698 20 O -0.413 6.413 21 C -0.203 4.203 22 C 0.071 3.929 23 H 0.114 0.886 24 C -0.225 4.225 25 N -0.334 5.334 26 C -0.019 4.019 27 C -0.169 4.169 28 C -0.197 4.197 29 C 0.305 3.695 30 O -0.418 6.418 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.229 0.771 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.117 0.883 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.540 -3.787 19.669 20.341 hybrid contribution -0.313 0.779 -0.742 1.120 sum 3.227 -3.008 18.926 19.434 Atomic orbital electron populations 1.22707 0.81744 1.02037 0.99759 1.87904 1.19077 1.27615 1.95049 1.23842 0.92961 0.83998 0.99558 0.92002 1.21542 0.88252 0.97176 0.88982 1.44251 1.21571 1.66228 1.00761 1.19024 1.02599 1.29328 0.84782 0.90252 1.24811 0.97432 1.00642 0.97376 1.69929 1.19417 1.46967 1.20680 0.86162 0.78867 0.78726 0.81782 1.21046 1.21562 1.21132 1.21796 0.97700 0.93804 0.86159 1.22335 0.96256 1.00706 0.77701 0.87966 1.45977 1.19219 1.64254 1.07359 1.20469 0.83416 0.77636 0.88245 1.90637 1.27723 1.43823 1.79162 1.22183 0.99978 1.05517 0.92589 1.20631 0.83881 0.94966 0.93438 0.88634 1.22185 1.02069 1.03804 0.94439 1.48204 1.17728 1.07470 1.59983 1.22164 0.84827 0.97568 0.97314 1.22606 1.00707 0.93361 1.00206 1.22332 0.95970 1.00318 1.01062 1.20895 0.88535 0.82179 0.77910 1.90666 1.43712 1.62229 1.45237 0.94850 0.93641 0.90240 0.93438 0.91958 0.93614 0.93302 0.96177 0.77141 0.87490 0.88096 0.91363 0.92219 0.90872 0.91870 0.88640 0.89597 0.89576 0.88270 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.93 10.44 -35.23 -0.37 -7.30 16 3 C 0.06 1.05 3.07 -24.90 -0.08 0.98 16 4 H 0.06 1.05 7.68 -51.93 -0.40 0.65 16 5 C 0.17 4.05 5.15 -3.06 -0.02 4.04 16 6 N -0.60 -15.57 3.39 -170.07 -0.58 -16.14 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 10 N -0.92 -27.04 10.31 55.49 0.57 -26.47 16 11 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.13 2.88 6.93 -2.53 -0.02 2.87 16 16 C 0.14 2.54 3.04 -65.78 -0.20 2.34 16 17 H 0.10 2.17 7.73 -51.93 -0.40 1.77 16 18 N -0.72 -10.61 5.23 -51.73 -0.27 -10.88 16 19 C 0.52 7.51 7.69 -10.99 -0.08 7.43 16 20 O -0.54 -9.21 13.38 5.56 0.07 -9.14 16 21 C -0.16 -1.80 5.13 -27.89 -0.14 -1.94 16 22 C 0.17 1.83 2.43 -67.93 -0.16 1.67 16 23 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 24 C -0.17 -1.47 9.20 37.16 0.34 -1.13 16 25 N -0.60 -6.91 2.20 -164.73 -0.36 -7.27 16 26 C 0.10 1.03 6.87 -3.03 -0.02 1.01 16 27 C -0.13 -1.19 7.19 -25.01 -0.18 -1.37 16 28 C -0.16 -1.55 6.86 -26.74 -0.18 -1.73 16 29 C 0.52 6.69 7.39 -10.86 -0.08 6.61 16 30 O -0.54 -8.54 15.07 5.56 0.08 -8.46 16 31 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 35 H 0.06 1.73 7.30 -51.93 -0.38 1.35 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.40 4.80 8.52 -40.82 -0.35 4.45 16 40 H 0.11 1.32 6.65 -51.93 -0.35 0.98 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.79 6.77 -51.93 -0.35 0.44 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 1.12 6.74 -51.92 -0.35 0.77 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 50 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -34.13 397.16 -8.28 -42.41 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.41 Total: 4.66 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 0.02 Total: 15.46 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.64 Total: -60.76 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.21 Total: -24.89 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.13 -8.28 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213716851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.333 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds